NO16G01540, NO16G01540 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO16G01540
Unique Name	NO16G01540
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2550
Alignment location	chr16:465263..467812 -

Link to JBrowse

Properties


Property Name	Value
Description	Glutaryl-mitochondrial

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr16	genome	chr16:465263..467812 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0050660	flavin adenine dinucleotide binding
GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors
GO:0003824	catalytic activity
GO:0000166	nucleotide binding

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process
GO:0008152	metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR036250	AcylCo_DH-like_C
IPR009100	AcylCoA_DH/oxidase_NM_dom
IPR006091	Acyl-CoA_Oxase/DH_cen-dom
IPR013786	AcylCoA_DH/ox_N
IPR009075	AcylCo_DH/oxidase_C

Homology

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BLAST of NO16G01540 vs. NCBI_GenBank
Match: EWM23946.1 (glutaryl- mitochondrial precursor [Nannochloropsis gaditana])

HSP 1 Score: 715.3 bits (1845), Expect = 1.200e-202
Identity = 350/420 (83.33%), Postives = 381/420 (90.71%), Query Frame = 0

Query:   22 PGLSRALATLSVGAPDLPRASSTNT-KRRFEWQDPLMLRAQLTEEEGMIQDMTRAYCKESLQSRILQANRHEEFDRKILTEMGELGLLGPTLKGYGCPGVGYVAYGLIAHEVEAVDSAYRSAMSVQSSLVMHPIYTFGTEKQKETYLPGLAKGTLVGCFGLTEPNHGSDPGGMETRARRQKDGSFVLSGSKNWITNSPIADVFVVWAKDDEGAIRGFVLEKGMAGLTAPKIEGKFSLRASATGMIVMDDVKVPGENLLPKAKGLGGPFSCLNSARYGISWGTMGAAGFCMATAREYVLDRMQFGAPLASNQLIQKKLADMGTEIALGLQASLRVGRLLDQKEAVPEMISMVKRNNCGKALEVVRVARDMLGGNGISDEYHVIRHVMNLEAVNTYEGTHDVHALILGRAITGIPAFVPRNS 441
            PG +RA  T+ V  P+ P   + +T K+R++WQDPL+LRAQLTEEEGMIQDM RAYC++SLQ RIL ANRHEEFDRKI+TEMGELGLLGPT++GYGC GVGYVAYGLIA EVEAVDSAYRSAMSVQSSLVMHPIYTFGT++QKE YLPGLAKG LVGCFGLTEPNHGSDPGGMETRAR+Q DG +VLSGSKNWITNSPIADVFVVWAKDDEG IRGFVLE+GM GLTAPKIEGKFSLRAS TGMIVMDDV+VP  NLLP A+GLGGPFSCLNSARYGISWG+MGAA FCM+TA  YVL+R QFGAPLASNQLIQ+KLADM T+IAL LQ SLRVGRLLD+  AVPEM+S+VKRNNCGKAL + R ARDMLGGNGISDEYHVIRH+MNLEAVNTYEGTHDVHALILGRAITGIPAFVPRNS
Sbjct:   14 PGFTRAFGTVPVDLPEHPPTVNASTDKQRYDWQDPLLLRAQLTEEEGMIQDMARAYCQQSLQPRILHANRHEEFDRKIMTEMGELGLLGPTIRGYGCSGVGYVAYGLIAREVEAVDSAYRSAMSVQSSLVMHPIYTFGTKEQKEKYLPGLAKGALVGCFGLTEPNHGSDPGGMETRARKQPDGGYVLSGSKNWITNSPIADVFVVWAKDDEGVIRGFVLERGMKGLTAPKIEGKFSLRASTTGMIVMDDVEVPASNLLPLARGLGGPFSCLNSARYGISWGSMGAAAFCMSTALAYVLERSQFGAPLASNQLIQRKLADMDTDIALALQGSLRVGRLLDEGRAVPEMVSLVKRNNCGKALNIARSARDMLGGNGISDEYHVIRHMMNLEAVNTYEGTHDVHALILGRAITGIPAFVPRNS 433

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BLAST of NO16G01540 vs. NCBI_GenBank
Match: XP_009518910.1 (acyl-CoA dehydrogenase [Phytophthora sojae] >EGZ23622.1 acyl-CoA dehydrogenase [Phytophthora sojae])

HSP 1 Score: 594.0 bits (1530), Expect = 3.900e-166
Identity = 289/389 (74.29%), Postives = 332/389 (85.35%), Query Frame = 0

Query:   50 FEWQDPLMLRAQLTEEEGMIQDMTRAYCKESLQSRILQANRHEEFDRKILTEMGELGLLGPTLKGYGCPGVGYVAYGLIAHEVEAVDSAYRSAMSVQSSLVMHPIYTFGTEKQKETYLPGLAKGTLVGCFGLTEPNHGSDPGGMETRARRQKDGSFVLSGSKNWITNSPIADVFVVWAKDDEGAIRGFVLEKGMAGLTAPKIEGKFSLRASATGMIVMDDVKVPGENLLPKAKGLGGPFSCLNSARYGISWGTMGAAGFCMATAREYVLDRMQFGAPLASNQLIQKKLADMGTEIALGLQASLRVGRLLDQKEAVPEMISMVKRNNCGKALEVVRVARDMLGGNGISDEYHVIRHVMNLEAVNTYEGTHDVHALILGRAITGIPAFVPR 439
            F W+DPLML  QLT+EE MIQ     YC+  L  RI++ANR  +FDR I+ EMGE+G LGPT++GYGC GVGYV+YGLIA+ VE VDSAYRSAMSVQSSLVMHPI TFG+E+QKE YLP LA G L+GCFGLTEPNHGSDPG METRAR + D  +VL+GSKNWITN+PIADVF+VWAKDDEG IRGF+LEK   GL+AP IEGK +L ASATGMI ++DV+VP EN+LPK KGL GPF+CLNSARYGISWG +GAA  CM  AR+Y LDR QFGAPLA+NQLIQKKLADM TEIA+GLQ  L+VGRLLD+ +A  E+ISMVKRN+CGKA+E+ R ARDMLGGNG+SDEYH+IRHV+NLEAVNTYEGTHDVHALILGRAITG+PAFVPR
Sbjct:   30 FNWKDPLMLEGQLTDEEAMIQKSANDYCQGKLLPRIVEANRKGKFDRSIMKEMGEMGFLGPTIQGYGCAGVGYVSYGLIANAVERVDSAYRSAMSVQSSLVMHPINTFGSEEQKEKYLPRLATGELIGCFGLTEPNHGSDPGSMETRARLKGD-KYVLNGSKNWITNAPIADVFLVWAKDDEGDIRGFILEKDFPGLSAPYIEGKATLMASATGMIFLEDVEVPKENMLPKVKGLKGPFTCLNSARYGISWGALGAAYSCMDIARQYTLDRSQFGAPLAANQLIQKKLADMNTEIAIGLQGCLQVGRLLDEGKAPVELISMVKRNSCGKAIEIARNARDMLGGNGVSDEYHIIRHVVNLEAVNTYEGTHDVHALILGRAITGLPAFVPR 417

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BLAST of NO16G01540 vs. NCBI_GenBank
Match: XP_004311444.2 (PREDICTED: glutaryl-CoA dehydrogenase, mitochondrial isoform X2 [Tursiops truncatus])

HSP 1 Score: 594.0 bits (1530), Expect = 3.900e-166
Identity = 285/395 (72.15%), Postives = 337/395 (85.32%), Query Frame = 0

Query:   42 SSTNTKRRFEWQDPLMLRAQLTEEEGMIQDMTRAYCKESLQSRILQANRHEEFDRKILTEMGELGLLGPTLKGYGCPGVGYVAYGLIAHEVEAVDSAYRSAMSVQSSLVMHPIYTFGTEKQKETYLPGLAKGTLVGCFGLTEPNHGSDPGGMETRARRQKDG-SFVLSGSKNWITNSPIADVFVVWAKDDEGAIRGFVLEKGMAGLTAPKIEGKFSLRASATGMIVMDDVKVPGENLLPKAKGLGGPFSCLNSARYGISWGTMGAAGFCMATAREYVLDRMQFGAPLASNQLIQKKLADMGTEIALGLQASLRVGRLLDQKEAVPEMISMVKRNNCGKALEVVRVARDMLGGNGISDEYHVIRHVMNLEAVNTYEGTHDVHALILGRAITGIPAF 436
            S+ +++  F+W+DPL+L  QLT +E +I+D  R YC+E L  RIL ANR+E F R+I++EMGELG+LGPT+KGYGC GV  VAYGL+A E+E VDS YRSAMSVQSSLVMHPIY +G+E+Q++ YLP LAKG L+GCFGLTEPNHGSDPG METRAR+   G S+ L+G+K WITNSP+AD+FVVWA+ ++  IRGF+LEKGM GL+APKIEGKFSLRASATGMI+MDDVKVP EN+LPKA GL GPF CLN+ARYGI+WG +GAA FC+ TAR+Y LDR+QFG PLA NQLIQKKLADM TEI LGL A L++GRL DQ +A PEMIS++KRNNCGKAL++ R ARDMLGGNGISDEYHVIRH MNLEAVNTYEGTHD+HALILGRAITGI AF
Sbjct:   40 SAKSSRPEFDWRDPLLLEEQLTADEVLIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQQQKYLPRLAKGELLGCFGLTEPNHGSDPGSMETRARQNPSGRSYTLNGAKTWITNSPVADLFVVWARCEDSCIRGFLLEKGMRGLSAPKIEGKFSLRASATGMIIMDDVKVPEENVLPKASGLAGPFGCLNNARYGIAWGVLGAAEFCLHTARQYTLDRIQFGVPLAKNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKATPEMISLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAF 434

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BLAST of NO16G01540 vs. NCBI_GenBank
Match: KUG02007.1 (Acyl-CoA dehydrogenase [Phytophthora nicotianae])

HSP 1 Score: 592.8 bits (1527), Expect = 8.700e-166
Identity = 287/389 (73.78%), Postives = 332/389 (85.35%), Query Frame = 0

Query:   50 FEWQDPLMLRAQLTEEEGMIQDMTRAYCKESLQSRILQANRHEEFDRKILTEMGELGLLGPTLKGYGCPGVGYVAYGLIAHEVEAVDSAYRSAMSVQSSLVMHPIYTFGTEKQKETYLPGLAKGTLVGCFGLTEPNHGSDPGGMETRARRQKDGSFVLSGSKNWITNSPIADVFVVWAKDDEGAIRGFVLEKGMAGLTAPKIEGKFSLRASATGMIVMDDVKVPGENLLPKAKGLGGPFSCLNSARYGISWGTMGAAGFCMATAREYVLDRMQFGAPLASNQLIQKKLADMGTEIALGLQASLRVGRLLDQKEAVPEMISMVKRNNCGKALEVVRVARDMLGGNGISDEYHVIRHVMNLEAVNTYEGTHDVHALILGRAITGIPAFVPR 439
            F W+DPLML  QLT+EE MIQ     YC+  L  RI++ANR  +FDR I+ EMGE+G LGPT++GYGC GVGYV+YGLIA+ VE VDSAYRSAMSVQSSLVMHPI TFG+++QKE YLP LA G L+GCFGLTEPNHGSDPG METRAR + D  ++L+GSKNWITN+PIADVF+VWAKDDEG IRGF+LEK   GL+AP IEGK +L ASATGMI ++DV+VP EN+LPK KGL GPF+CLNSARYGISWG +GAA  CM  AR+Y LDR QFGAPLA+NQLIQKKLADM TEIA+GLQ  L+VGRLLD+ +A  E+ISMVKRN+CGKA+E+ R ARDMLGGNG+SDEYH+IRHV+NLEAVNTYEGTHDVHALILGRAITG+PAFVPR
Sbjct:   30 FNWRDPLMLEGQLTDEEAMIQKSANDYCQGKLLPRIVEANRKGKFDRSIMKEMGEMGFLGPTIQGYGCAGVGYVSYGLIANAVERVDSAYRSAMSVQSSLVMHPINTFGSDEQKEKYLPRLATGELIGCFGLTEPNHGSDPGSMETRARLKGD-KYILNGSKNWITNAPIADVFLVWAKDDEGGIRGFILEKDFPGLSAPYIEGKATLMASATGMIFLEDVEVPKENMLPKVKGLKGPFTCLNSARYGISWGALGAAYACMDIARQYTLDRNQFGAPLAANQLIQKKLADMNTEIAIGLQGCLQVGRLLDEGKAPVELISMVKRNSCGKAIEIARNARDMLGGNGVSDEYHIIRHVVNLEAVNTYEGTHDVHALILGRAITGLPAFVPR 417

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BLAST of NO16G01540 vs. NCBI_GenBank
Match: XP_004277506.1 (PREDICTED: glutaryl-CoA dehydrogenase, mitochondrial [Orcinus orca])

HSP 1 Score: 592.4 bits (1526), Expect = 1.100e-165
Identity = 284/395 (71.90%), Postives = 337/395 (85.32%), Query Frame = 0

Query:   42 SSTNTKRRFEWQDPLMLRAQLTEEEGMIQDMTRAYCKESLQSRILQANRHEEFDRKILTEMGELGLLGPTLKGYGCPGVGYVAYGLIAHEVEAVDSAYRSAMSVQSSLVMHPIYTFGTEKQKETYLPGLAKGTLVGCFGLTEPNHGSDPGGMETRARRQKDG-SFVLSGSKNWITNSPIADVFVVWAKDDEGAIRGFVLEKGMAGLTAPKIEGKFSLRASATGMIVMDDVKVPGENLLPKAKGLGGPFSCLNSARYGISWGTMGAAGFCMATAREYVLDRMQFGAPLASNQLIQKKLADMGTEIALGLQASLRVGRLLDQKEAVPEMISMVKRNNCGKALEVVRVARDMLGGNGISDEYHVIRHVMNLEAVNTYEGTHDVHALILGRAITGIPAF 436
            S+ +++  F+W+DPL+L  QLT +E +I+D  R YC+E L  RIL ANR+E F R+I++EMGELG+LGPT+KGYGC GV  VAYGL+A E+E VDS YRSAMSVQSSLVMHPIY +G+E+Q++ YLP LAKG L+GCFGLTEPNHGSDPG METRAR+   G S+ L+G+K WITNSP+AD+FVVWA+ ++  IRGF+LEKGM GL+APKIEGKFSLRASATGMI+MDDV+VP EN+LPKA GL GPF CLN+ARYGI+WG +GAA FC+ TAR+Y LDR+QFG PLA NQLIQKKLADM TEI LGL A L++GRL DQ +A PEMIS++KRNNCGKAL++ R ARDMLGGNGISDEYHVIRH MNLEAVNTYEGTHD+HALILGRAITGI AF
Sbjct:   40 SAKSSRPEFDWRDPLLLEEQLTADEVLIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQQQKYLPRLAKGELLGCFGLTEPNHGSDPGSMETRARQNPSGRSYTLNGAKTWITNSPVADLFVVWARCEDSCIRGFLLEKGMRGLSAPKIEGKFSLRASATGMIIMDDVEVPEENVLPKASGLAGPFGCLNNARYGITWGVLGAAEFCLHTARQYTLDRIQFGVPLAKNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKATPEMISLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAF 434

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BLAST of NO16G01540 vs. NCBI_GenBank
Match: XP_024623119.1 (glutaryl-CoA dehydrogenase, mitochondrial isoform X2 [Neophocaena asiaeorientalis asiaeorientalis] >XP_024623120.1 glutaryl-CoA dehydrogenase, mitochondrial isoform X2 [Neophocaena asiaeorientalis asiaeorientalis])

HSP 1 Score: 592.4 bits (1526), Expect = 1.100e-165
Identity = 284/395 (71.90%), Postives = 337/395 (85.32%), Query Frame = 0

Query:   42 SSTNTKRRFEWQDPLMLRAQLTEEEGMIQDMTRAYCKESLQSRILQANRHEEFDRKILTEMGELGLLGPTLKGYGCPGVGYVAYGLIAHEVEAVDSAYRSAMSVQSSLVMHPIYTFGTEKQKETYLPGLAKGTLVGCFGLTEPNHGSDPGGMETRARRQKDG-SFVLSGSKNWITNSPIADVFVVWAKDDEGAIRGFVLEKGMAGLTAPKIEGKFSLRASATGMIVMDDVKVPGENLLPKAKGLGGPFSCLNSARYGISWGTMGAAGFCMATAREYVLDRMQFGAPLASNQLIQKKLADMGTEIALGLQASLRVGRLLDQKEAVPEMISMVKRNNCGKALEVVRVARDMLGGNGISDEYHVIRHVMNLEAVNTYEGTHDVHALILGRAITGIPAF 436
            S+ +++  F+W+DPL+L  QLT +E +I+D  R YC+E L  RIL ANR+E F R+I++EMGELG+LGPT+KGYGC GV  VAYGL+A E+E VDS YRSAMSVQSSLVMHPIY +G+E+Q++ YLP LAKG L+GCFGLTEPNHGSDPG METRAR+   G S+ L+G+K WITNSP+AD+FVVWA+ ++  IRGF+LEKGM GL+APKIEGKFSLRASATGMI+MDDV+VP EN+LPKA GL GPF CLN+ARYGI+WG +GAA FC+ TAR+Y LDR+QFG PLA NQLIQKKLADM TEI LGL A L++GRL DQ +A PEMIS++KRNNCGKAL++ R ARDMLGGNGISDEYHVIRH MNLEAVNTYEGTHD+HALILGRAITGI AF
Sbjct:   40 SAKSSRPEFDWRDPLLLEEQLTADEVLIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQQQKYLPRLAKGELLGCFGLTEPNHGSDPGSMETRARQNPSGRSYTLNGAKTWITNSPVADLFVVWARCEDSCIRGFLLEKGMRGLSAPKIEGKFSLRASATGMIIMDDVEVPEENVLPKASGLAGPFGCLNNARYGIAWGVLGAAEFCLHTARQYTLDRIQFGVPLAKNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKATPEMISLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAF 434

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BLAST of NO16G01540 vs. NCBI_GenBank
Match: XP_008891494.1 (hypothetical protein PPTG_02217 [Phytophthora parasitica INRA-310] >ETI50398.1 hypothetical protein F443_06071 [Phytophthora parasitica P1569] >ETK90271.1 hypothetical protein L915_05951 [Phytophthora parasitica] >ETL43675.1 hypothetical protein L916_05887 [Phytophthora parasitica] >ETL96851.1 hypothetical protein L917_05776 [Phytophthora parasitica] >ETM50010.1 hypothetical protein L914_05894 [Phytophthora parasitica] >ETN22214.1 hypothetical protein PPTG_02217 [Phytophthora parasitica INRA-310] >ETP20162.1 hypothetical protein F441_06084 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 592.0 bits (1525), Expect = 1.500e-165
Identity = 287/389 (73.78%), Postives = 332/389 (85.35%), Query Frame = 0

Query:   50 FEWQDPLMLRAQLTEEEGMIQDMTRAYCKESLQSRILQANRHEEFDRKILTEMGELGLLGPTLKGYGCPGVGYVAYGLIAHEVEAVDSAYRSAMSVQSSLVMHPIYTFGTEKQKETYLPGLAKGTLVGCFGLTEPNHGSDPGGMETRARRQKDGSFVLSGSKNWITNSPIADVFVVWAKDDEGAIRGFVLEKGMAGLTAPKIEGKFSLRASATGMIVMDDVKVPGENLLPKAKGLGGPFSCLNSARYGISWGTMGAAGFCMATAREYVLDRMQFGAPLASNQLIQKKLADMGTEIALGLQASLRVGRLLDQKEAVPEMISMVKRNNCGKALEVVRVARDMLGGNGISDEYHVIRHVMNLEAVNTYEGTHDVHALILGRAITGIPAFVPR 439
            F W+DPLML  QLT+EE MIQ     YC+  L  RI++ANR  +FDR I+ EMGE+G LGPT++GYGC GVGYV+YGLIA+ VE VDSAYRSAMSVQSSLVMHPI TFG+++QKE YLP LA G L+GCFGLTEPNHGSDPG METRAR + D  ++L+GSKNWITN+PIADVF+VWAKDDEG IRGF+LEK   GL+AP IEGK +L ASATGMI ++DV+VP EN+LPK KGL GPF+CLNSARYGISWG +GAA  CM  AR+Y LDR QFGAPLA+NQLIQKKLADM TEIA+GLQ  L+VGRLLD+ +A  E+ISMVKRN+CGKA+E+ R ARDMLGGNG+SDEYH+IRHV+NLEAVNTYEGTHDVHALILGRAITG+PAFVPR
Sbjct:   30 FNWRDPLMLEGQLTDEEAMIQKSANDYCQGKLLPRIVEANRKGKFDRSIMKEMGEMGFLGPTIQGYGCAGVGYVSYGLIANAVERVDSAYRSAMSVQSSLVMHPINTFGSDEQKEKYLPRLATGELIGCFGLTEPNHGSDPGSMETRARLKGD-KYILNGSKNWITNAPIADVFLVWAKDDEGDIRGFILEKDFPGLSAPYIEGKATLMASATGMIFLEDVEVPKENMLPKVKGLKGPFTCLNSARYGISWGALGAAYACMDIARQYTLDRNQFGAPLAANQLIQKKLADMNTEIAIGLQGCLQVGRLLDEGKAPVELISMVKRNSCGKAIEIARNARDMLGGNGVSDEYHIIRHVVNLEAVNTYEGTHDVHALILGRAITGLPAFVPR 417

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BLAST of NO16G01540 vs. NCBI_GenBank
Match: ETO79122.1 (hypothetical protein F444_06129 [Phytophthora parasitica P1976] >ETP48101.1 hypothetical protein F442_06110 [Phytophthora parasitica P10297])

HSP 1 Score: 592.0 bits (1525), Expect = 1.500e-165
Identity = 287/389 (73.78%), Postives = 332/389 (85.35%), Query Frame = 0

Query:   50 FEWQDPLMLRAQLTEEEGMIQDMTRAYCKESLQSRILQANRHEEFDRKILTEMGELGLLGPTLKGYGCPGVGYVAYGLIAHEVEAVDSAYRSAMSVQSSLVMHPIYTFGTEKQKETYLPGLAKGTLVGCFGLTEPNHGSDPGGMETRARRQKDGSFVLSGSKNWITNSPIADVFVVWAKDDEGAIRGFVLEKGMAGLTAPKIEGKFSLRASATGMIVMDDVKVPGENLLPKAKGLGGPFSCLNSARYGISWGTMGAAGFCMATAREYVLDRMQFGAPLASNQLIQKKLADMGTEIALGLQASLRVGRLLDQKEAVPEMISMVKRNNCGKALEVVRVARDMLGGNGISDEYHVIRHVMNLEAVNTYEGTHDVHALILGRAITGIPAFVPR 439
            F W+DPLML  QLT+EE MIQ     YC+  L  RI++ANR  +FDR I+ EMGE+G LGPT++GYGC GVGYV+YGLIA+ VE VDSAYRSAMSVQSSLVMHPI TFG+++QKE YLP LA G L+GCFGLTEPNHGSDPG METRAR + D  ++L+GSKNWITN+PIADVF+VWAKDDEG IRGF+LEK   GL+AP IEGK +L ASATGMI ++DV+VP EN+LPK KGL GPF+CLNSARYGISWG +GAA  CM  AR+Y LDR QFGAPLA+NQLIQKKLADM TEIA+GLQ  L+VGRLLD+ +A  E+ISMVKRN+CGKA+E+ R ARDMLGGNG+SDEYH+IRHV+NLEAVNTYEGTHDVHALILGRAITG+PAFVPR
Sbjct:   30 FNWRDPLMLEGQLTDEEAMIQKSANDYCQGKLLPRIVEANRKGKFDRSIMKEMGEMGFLGPTIQGYGCAGVGYVSYGLIANAVERVDSAYRSAMSVQSSLVMHPINTFGSDEQKEKYLPRLATGELIGCFGLTEPNHGSDPGSMETRARLKGD-KYILNGSKNWITNAPIADVFLVWAKDDEGDIRGFILEKDFPGLSAPYIEGKAALMASATGMIFLEDVEVPKENMLPKVKGLKGPFTCLNSARYGISWGALGAAYACMDIARQYTLDRNQFGAPLAANQLIQKKLADMNTEIAIGLQGCLQVGRLLDEGKAPVELISMVKRNSCGKAIEIARNARDMLGGNGVSDEYHIIRHVVNLEAVNTYEGTHDVHALILGRAITGLPAFVPR 417

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BLAST of NO16G01540 vs. NCBI_GenBank
Match: XP_007172023.1 (PREDICTED: glutaryl-CoA dehydrogenase, mitochondrial [Balaenoptera acutorostrata scammoni])

HSP 1 Score: 592.0 bits (1525), Expect = 1.500e-165
Identity = 284/395 (71.90%), Postives = 336/395 (85.06%), Query Frame = 0

Query:   42 SSTNTKRRFEWQDPLMLRAQLTEEEGMIQDMTRAYCKESLQSRILQANRHEEFDRKILTEMGELGLLGPTLKGYGCPGVGYVAYGLIAHEVEAVDSAYRSAMSVQSSLVMHPIYTFGTEKQKETYLPGLAKGTLVGCFGLTEPNHGSDPGGMETRARRQKDG-SFVLSGSKNWITNSPIADVFVVWAKDDEGAIRGFVLEKGMAGLTAPKIEGKFSLRASATGMIVMDDVKVPGENLLPKAKGLGGPFSCLNSARYGISWGTMGAAGFCMATAREYVLDRMQFGAPLASNQLIQKKLADMGTEIALGLQASLRVGRLLDQKEAVPEMISMVKRNNCGKALEVVRVARDMLGGNGISDEYHVIRHVMNLEAVNTYEGTHDVHALILGRAITGIPAF 436
            S+ +++  F+W+DPL+L  QLT +E +I+D  R YC+E L  RIL ANR+E F R+I++EMGELG+LGPT+KGYGC GV  VAYGL+A E+E VDS YRSAMSVQSSLVMHPIY +G+E+Q++ YLP LAKG L+GCFGLTEPNHGSDPG METRAR    G S+ L+G+K WITNSP+AD+FVVWA+ ++  IRGF+LEKGM GL+APKIEGKFSLRASATGMI+MDDV+VP EN+LPKA GL GPF CLN+ARYGI+WG +GAA FC+ TAR+Y LDR+QFG PLA NQLIQKKLADM TEI LGL A L++GRL DQ +A PEMIS++KRNNCGKAL++ R ARDMLGGNGISDEYHVIRH MNLEAVNTYEGTHD+HALILGRAITGI AF
Sbjct:   40 SAKSSRPEFDWRDPLLLEEQLTADEVLIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQQQKYLPRLAKGELLGCFGLTEPNHGSDPGSMETRARHNPSGRSYTLNGAKTWITNSPVADLFVVWARCEDSCIRGFLLEKGMRGLSAPKIEGKFSLRASATGMIIMDDVEVPEENVLPKASGLAGPFGCLNNARYGITWGVLGAAEFCLHTARQYTLDRIQFGVPLAKNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKATPEMISLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAF 434

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BLAST of NO16G01540 vs. NCBI_GenBank
Match: WP_065701784.1 (MULTISPECIES: acyl-CoA dehydrogenase [Thalassospira] >OCK06216.1 Glutaryl-CoA dehydrogenase [Thalassospira sp. KO164] >SED59343.1 glutaryl-CoA dehydrogenase [Thalassospira sp. KO164] >OHZ02179.1 acyl-CoA dehydrogenase [Thalassospira sp. MIT1004])

HSP 1 Score: 592.0 bits (1525), Expect = 1.500e-165
Identity = 290/387 (74.94%), Postives = 332/387 (85.79%), Query Frame = 0

Query:   50 FEWQDPLMLRAQLTEEEGMIQDMTRAYCKESLQSRILQANRHEEFDRKILTEMGELGLLGPTL-KGYGCPGVGYVAYGLIAHEVEAVDSAYRSAMSVQSSLVMHPIYTFGTEKQKETYLPGLAKGTLVGCFGLTEPNHGSDPGGMETRARRQKDGSFVLSGSKNWITNSPIADVFVVWAKDDEGAIRGFVLEKGMAGLTAPKIEGKFSLRASATGMIVMDDVKVPGENLLPKAKGLGGPFSCLNSARYGISWGTMGAAGFCMATAREYVLDRMQFGAPLASNQLIQKKLADMGTEIALGLQASLRVGRLLDQKEAVPEMISMVKRNNCGKALEVVRVARDMLGGNGISDEYHVIRHVMNLEAVNTYEGTHDVHALILGRAITGIPAF 436
            F W+DPLM+  QL+EEE MI+D  RAYC+E+LQ+R+L+ANRHE F R+I+TEMGELGLLGPT+ + YG PGV +VAYGL+A EVE VDS YRSAMSVQSSLVMHPIY +G+E+Q++ YLP LA G  VGCFGLTEP+HGSDPGGM+TRAR+  DG F LSGSK WITNSPIADVFVVW KDDEG IRGF+LEKGM GL+APKIEGKFSLRAS TG IVMD+V VP EN+LP AKGLGGPF CLN ARYGI+WG MGAA FC   AR+Y LDR QFG PLA+NQLIQ KLA+M TEI LGLQ +L++GRLLD ++A PE IS++KRNNCGKAL++ RVARDM GGNGI+DE+HVIRHVMNLEAVNTYEGTHDVHALILGRA TGI AF
Sbjct:    7 FHWEDPLMIEDQLSEEERMIRDAARAYCQENLQTRVLEANRHEIFHREIMTEMGELGLLGPTIPEEYGGPGVNHVAYGLVAREVERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRKKYLPKLATGEWVGCFGLTEPDHGSDPGGMKTRARK-ADGGFTLSGSKMWITNSPIADVFVVWGKDDEGVIRGFILEKGMKGLSAPKIEGKFSLRASITGEIVMDNVFVPAENMLPNAKGLGGPFGCLNKARYGIAWGAMGAAEFCWHAARQYTLDRKQFGRPLAANQLIQLKLANMQTEITLGLQGALQLGRLLDAEKAAPEAISLMKRNNCGKALDIARVARDMHGGNGIADEFHVIRHVMNLEAVNTYEGTHDVHALILGRAQTGIQAF 392

The following BLAST results are available for this feature:

BLAST of NO16G01540 vs. NCBI_GenBank

BLAST of NO16G01540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM23946.1	1.200e-202	83.33	glutaryl- mitochondrial precursor [Nannochloropsis...	[more]
XP_009518910.1	3.900e-166	74.29	acyl-CoA dehydrogenase [Phytophthora sojae] >EGZ23...	[more]
XP_004311444.2	3.900e-166	72.15	PREDICTED: glutaryl-CoA dehydrogenase, mitochondri...	[more]
KUG02007.1	8.700e-166	73.78	Acyl-CoA dehydrogenase [Phytophthora nicotianae]	[more]
XP_004277506.1	1.100e-165	71.90	PREDICTED: glutaryl-CoA dehydrogenase, mitochondri...	[more]
XP_024623119.1	1.100e-165	71.90	glutaryl-CoA dehydrogenase, mitochondrial isoform ...	[more]
XP_008891494.1	1.500e-165	73.78	hypothetical protein PPTG_02217 [Phytophthora para...	[more]
ETO79122.1	1.500e-165	73.78	hypothetical protein F444_06129 [Phytophthora para...	[more]
XP_007172023.1	1.500e-165	71.90	PREDICTED: glutaryl-CoA dehydrogenase, mitochondri...	[more]
WP_065701784.1	1.500e-165	74.94	MULTISPECIES: acyl-CoA dehydrogenase [Thalassospir...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL150	nonsL150	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR018	ncniR018	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR031	ngnoR031	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK003131	NSK003131	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO16G01540.1	NO16G01540.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593552	gene_6036	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100027g14	gene6486	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO16G01540.1	NO16G01540.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO16G01540 ID=NO16G01540|Name=NO16G01540|organism=Nannochloropsis oceanica|type=gene|length=2550bp
AGCCTTTACAAAGCACCTCAATACATCAACGATGCTGCGGCGACTCTTCC
TGCGCTCGTCCACCTCTCTCTCTCGCACCATCGCCACCATCACGCCCGGC
TTGTCCCGTGCCCTTGCCACTCTTTCTGTTGGCGCGCCCGACCTCCCTCG
TGCCTCGAGCACCAACACGAAGCGGCGGTTCGAATGGCAAGACCCCCTGA
TGCTGCGGGCGCAATTGACGGAGGAAGAGGGCATGATCCAAGACATGACC
CGCGCCTACTGCAAAGAAAGCCTGCAATCCCGCATCCTCCAAGCGAACCG
CCACGAGGAGTTTGACCGGAAGATCCTGACGGAAATGGGCGAGTTGGGCT
TGCTAGGGCCGACCTTAAAAGGGTACGGATGCCCGGGAGTGGGATATGTG
GCATACGGCCTGATTGCCCATGAGGTGGAAGCGGTGGATAGTGCCTATCG
CTCCGCGATGAGCGTGCAGTCTTCTTTGGTCATGCATCCTATTTATACGT
TCGGCACGGAGAAGCAGAAGGAGACGTATTTGCCGGGGTTGGCAAAGGGG
ACGTTGGTGGGGTGTTTCGGGTTGACGGAGCCGAATCATGGTTCGGACCC
GGGGGGAATGGAGACACGTGCCCGCCGGCAGAAGGACGGGAGTTTCGTGT
TGAGTGGCAGTAAAAACTGGATCACCAACTCACCCATCGCGGACGTGTTT
GTGGTATGGGCGAAGGATGACGAGGGTGCTATCCGGGGGTTCGTCTTGGA
GAAGGGGATGGCCGGGTTAACAGCGCCTAAAATCGAGGGTAAGTTCTCGT
TGCGTGCGTCGGCGACGGGCATGATTGTGATGGACGACGTAAAAGTCCCA
GGGGAGAACTTATTGCCGAAAGCCAAGGGGTTAGGAGGGCCTTTCTCGTG
CTTGAATAGTGCGCGGTACGGCATCTCGTGGGGCACCATGGGGGCGGCTG
GGTTTTGCATGGCTACTGCCCGGGAGTACGTGCTGGACAGGATGCAGTTT
GGGGCGCCTTTGGCAAGCAATCAGCTGATACAAAAGAAACTCGCAGACAT
GGGGACTGAGATTGCGCTTGGTCTCCAGGCGTCGTTGAGGGTAGGGAGGT
TACTGGATCAGAAAGAGGCCGTGCCGGAGATGATCTCGATGGTAAAGAGG
AATAATTGTGGGAAGGCGTTGGAGGTGGTGAGGGTTGCAAGGGATATGTT
GGGAGGGAATGGAATCTCGGACGAATATCATGTGATTCGACATGTGATGA
ATTTGGAGGCGGTTAACACCTATGAAGGGACTCATGATGTGCATGCGTTG
ATACTGGGGAGAGCGATAACGGGCATCCCGGCGTTCGTGCCGCGGAATAG
CACATTTCAGTAAGACAGCAGAGGAAGAGGAAAACATGAGAAAGGAAGGG
AGGGTGTGAGATCGGGAGAGAGAGAGGAGGCATTGAAGATGTAAATATCA
TATAGCATAGGCCCGGGCGGGCAGTTGTGCATTTGTACCGCGTCGGATAG
CTTAGGAAGTTGGCGGAAGGGATGGGGGCAGAGGAGAAGGGTACGAGGAA
AGAAGTGAAAGTTACCAAAATCCGCTGGGCAGGTGTGAGTTGTGTGTAAG
AAAGGAAAGCGGGATGGAAGGGAGAAAGATTGTGAATAGCTATTCCGTGC
TCACAATTTTCTATGAAACATGTGCACTTTGGCGAGTAGAAGAGATGAAA
AATTAAACAAAAGGTAAAGCTGATGTACAACCAAAGGATGAGTATGAATG
CTTACGGTACTTTAATATCTGTCGAGGCCGAGGCCTCCGAGGCCAATTTC
CACTTCCACAAAATGAAACTCTCATACAAGCACTCGACCAAAATCTATGG
GACACATGTGGGCTTGTAATGCTCGCACCGCATGTGGCCTAGGGTTTGTG
CTCCTGGCTATTGTATCAAAACGCTTAATTCTCCCCCGCTCAATTTTTGC
AGGCTACTGGCACAAATCAAGCAGCCTGCAAGCACCTGGAGATGGACATC
CGCCCCGCGTTGAGGCCGTTACGCGTCGAACGGTCGGCGGGACAATTTTT
GCCTATGGGCGTCCATTCCTGATATAAAGTATGACGACTAGTCGCCCGCG
AGATGGTCCGTTGTCACCCGATTTCTTTTGCTCATGATTTGACGAAGGAG
CCGATAGAAACATAAAAATGTCTTGTTCTTCCGAAGGGGGCCCTTTCTTT
CATACAACTACGGCATATTATTGCCAGTCCGGAATGCTCGCCACGCATGG
TCTGCGCCGGGCCCATGAGACATCACTTCTCAGCCGCCCGGCGGTCCCCC
CTGGAGTTGCGATGAACACCCAGCGAGCATACGTTATATAGGCTAAGACA
CAGTGCTGCCACATACGCAGGAGCAACCTGGACCACTGAGCTTGTACTTT
TGGCCAGTCGCTCCATGGCTTGCCTGCTGTGTAAATGTAGCATCGCGCCG
GCCATGGGCGCCAATGGGGACAATGCATGGCTGCCCCATAAATTCAAACT
GGCAAAAGACTAACACGAGGCACCCTTTGCATGCCCAATCAATTTTTTTT

protein sequence of NO16G01540.1

>NO16G01540.1-protein ID=NO16G01540.1-protein|Name=NO16G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MLRRLFLRSSTSLSRTIATITPGLSRALATLSVGAPDLPRASSTNTKRRF
EWQDPLMLRAQLTEEEGMIQDMTRAYCKESLQSRILQANRHEEFDRKILT
EMGELGLLGPTLKGYGCPGVGYVAYGLIAHEVEAVDSAYRSAMSVQSSLV
MHPIYTFGTEKQKETYLPGLAKGTLVGCFGLTEPNHGSDPGGMETRARRQ
KDGSFVLSGSKNWITNSPIADVFVVWAKDDEGAIRGFVLEKGMAGLTAPK
IEGKFSLRASATGMIVMDDVKVPGENLLPKAKGLGGPFSCLNSARYGISW
GTMGAAGFCMATAREYVLDRMQFGAPLASNQLIQKKLADMGTEIALGLQA
SLRVGRLLDQKEAVPEMISMVKRNNCGKALEVVRVARDMLGGNGISDEYH
VIRHVMNLEAVNTYEGTHDVHALILGRAITGIPAFVPRNSTFQ*

Synonyms

Publications