NO16G01480, NO16G01480 (gene) Nannochloropsis oceanica

Overview
NameNO16G01480
Unique NameNO16G01480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length604
Alignment locationchr16:452181..452784 +

Link to JBrowse

Properties
Property NameValue
Descriptiondeletion of SUV3 suppressor 1(I)
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:452181..452784 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0008541proteasome regulatory particle, lid subcomplex
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0043248proteasome assembly
GO:0006406mRNA export from nucleus
GO:0016043cellular component organization
GO:0008152metabolic process
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR007834DSS1_SEM1
Homology
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BLAST of NO16G01480 vs. NCBI_GenBank
Match: EWM23966.1 (hypothetical protein Naga_100027g21 [Nannochloropsis gaditana])

HSP 1 Score: 70.1 bits (170), Expect = 3.300e-9
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0 
Query:    1 MATTETKPAAKDDAAPLLDVLEEDDEFEEFADPDWDA 38
            MATTE K AAKDDAAPLLDVLEEDDEFEEFADPDWDA
Sbjct:   95 MATTEPKVAAKDDAAPLLDVLEEDDEFEEFADPDWDA 131
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BLAST of NO16G01480 vs. NCBI_GenBank
Match: EWM23967.1 (hypothetical protein Naga_100027g21 [Nannochloropsis gaditana])

HSP 1 Score: 70.1 bits (170), Expect = 3.300e-9
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0 
Query:    1 MATTETKPAAKDDAAPLLDVLEEDDEFEEFADPDWDA 38
            MATTE K AAKDDAAPLLDVLEEDDEFEEFADPDWDA
Sbjct:   95 MATTEPKVAAKDDAAPLLDVLEEDDEFEEFADPDWDA 131
The following BLAST results are available for this feature:
BLAST of NO16G01480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23966.13.300e-994.59hypothetical protein Naga_100027g21 [Nannochlorops... [more]
EWM23967.13.300e-994.59hypothetical protein Naga_100027g21 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL154nonsL154Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR036ngnoR036Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01480.1NO16G01480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593534gene_6029Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100027g21gene6492Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01480.1NO16G01480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01480 ID=NO16G01480|Name=NO16G01480|organism=Nannochloropsis oceanica|type=gene|length=604bp
ATGGCCACCACGGAGACCAAGCCGGCGGCGAAGGACGATGCTGCGCCGTT
ACTGGACGTATTGGAAGAGGACGACGAGTTTGAGgtacgtatggcacgat
ggagatgtcgggtggtgagaatgcggaggtggaagacagggaaccccttt
gcccaagctgcgcgcatagtgggggaaagtatttgcgatatggaatcaat
cacttcgtgtcctactttacgatagttcctccacattttattctacccca
ttttggtccatcccgtttaccgcaacagGAATTTGCCGACCCAGACTGGG
ACGCGGCCGTCGACGAGGCTCAAGACGAGCAGCAGTGGCAGgtacgtcat
gtgcaaggcaatgattcttttcaaccccgcaaaaaaagctgaagcgtttt
gaagtgcaaacatgttcccatctgtccctcgttttgacagtccccttata
ttttcctgaatgtcaagatgaaaaccgcatccctccctccccctcactcg
tcttttcccccactcccatcacaaagGACGACTGGGACGACGACAAGGCG
GACGACGACTTTTCCCGACACCTTCGTCAGGAGCTCCAAAAGCAACAAAG
TTAA
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protein sequence of NO16G01480.1

>NO16G01480.1-protein ID=NO16G01480.1-protein|Name=NO16G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=75bp
MATTETKPAAKDDAAPLLDVLEEDDEFEEFADPDWDAAVDEAQDEQQWQD
DWDDDKADDDFSRHLRQELQKQQS*
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Synonyms
Publications