NO16G01460, NO16G01460 (gene) Nannochloropsis oceanica

Overview
NameNO16G01460
Unique NameNO16G01460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1476
Alignment locationchr16:448259..449734 -

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Properties
Property NameValue
DescriptionPstvd rna-biding virp1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:448259..449734 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G01460 vs. NCBI_GenBank
Match: EWM23943.1 (pstvd rna-biding virp1 [Nannochloropsis gaditana])

HSP 1 Score: 148.3 bits (373), Expect = 5.600e-32
Identity = 81/148 (54.73%), Postives = 98/148 (66.22%), Query Frame = 0 
Query:    1 MVDKYKMEMNKALTRLVEMEGENTVLKAKLASAQKRNAELEKEVGGLRRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAREERERLLTYVQTIVDAGDENLSRQLMDKIKLHYPSFGAGGDYSINVYGYDDVTIRALLAFCEPLFE 149
            MV+KYK EMN ALT+LV+ME ENTVL+AKLASAQKR+ ELE+EV  LR                                 +EER+RL+TYVQ I D+G+E L+R L + IK H+P FG GG+YSINVY YDD T+RALLA+CEPLFE
Sbjct:  183 MVEKYKNEMNIALTQLVKMERENTVLRAKLASAQKRSEELEREVAELR---------GGAAGGQGAGATSAQAAAETEPVTKEERDRLVTYVQAIADSGNEELARNLTELIKQHHPPFGEGGNYSINVYAYDDETVRALLAYCEPLFE 321
The following BLAST results are available for this feature:
BLAST of NO16G01460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23943.15.600e-3254.73pstvd rna-biding virp1 [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL154nonsL154Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR036ngnoR036Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003137NSK003137Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01460.1NO16G01460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|80379gene_6028Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100027g22gene6493Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01460.1NO16G01460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01460 ID=NO16G01460|Name=NO16G01460|organism=Nannochloropsis oceanica|type=gene|length=1476bp
ATGGTGGACAAGTATAAAATGGAGATGAATAAGGCCTTGACGCGGTTGGT
TGAGATGGAGGGGGAGAACACGGTGTTGAAGGCCAAGCTGGCTTCTGCGC
AAAAGAGGAACGCGGAGCTTGAGAAGGAGGTGGGAGGGTTACGACGCCAG
CAGCAGCATCAGCAGCACCAGCAGCAAGCAACAGGACCAGACGCTGGTGT
CACAGCAGTAGCAGCCGCCGTGCCAGGGGTAGCACCGGTGGCCAGGGAGG
AGAGGGAGCGGCTTCTGACGTACGTGCAGACGATTGTGGACGCAGGGGAC
GAGAACTTGAGCAGACAGgtactctcagttgggcccttccgtccgtccct
cccttcctccctccttccctctctcctctccaccattcttgctttcttct
catggactgtcacgtcgaaacgcggaacaaaattactcactccatccctc
tattccttcctgcactccctccttcagTTGATGGACAAAATCAAGTTGCA
TTACCCCTCTTTCGGAGCAGGGGGGGACTACTCAATCAACGTGTATGGCT
ACGACGATGTGACCATTCGTGCCTTGCTCGCTTTCTGTGAGCCTTTGTTC
GAGGCCGAGGAGGAGGGGGAGGAGCAGCAGCAGCAGCAGGAGCCGCTGCC
GCCGCCGCAGCAGCCGGAGGACGTGCAGCAGGACCAGAATGGTCATGCTC
GGCAGCAAGATGTGGAAACTCAGCAGCAGCAGCAGCAACAGCAGCACCAG
CACCAGCAGCAGCAGAAGCGGGACCGGCCAGCAGATTTGGACGACGAAGA
CGAGGACGAGGAAGAAAGGGAGAAGCGTGCGAAGAGTAGTGGCAGTAGTA
TAGAAGGAATAGGAGAAGAAGGTGGTGGCAGCTCGGCGGTGGCGGAGGAA
GAAAGGATGGAACAAGAGAAGGAGCCAGAAGAGGAGGAGGACGACGATGA
GGTAGAGGCGGGTGGGAAGGACGCCCACATGGAAGAGGACGAGGAGGAGG
AAGACGAGGAAGAGGGGAAGGGAGGGTCAGGGCCGTCATCGAACCTGCAG
AAGTGGTTGGCGCCGGGAGCGACGGCCACAGAGGAGGGAGCAGGGGCGAA
TGAAGGCGAAGGGGAGGAGGGGGGGGAGAAAAAGGGGGTGGGGGAGGGAG
GTAAGGACCGGGAGGGGGAGGAGAAGAAGAGAAAAGAGGAAGGGGGAAAT
GATTTGTGGGATGCGGCGCGGCAGATGAAGGAGGAGGAATTAAAACGGGA
AAGGGAGCGGGTGGTGGAGGAGATGCAGAGGCAGGAGGCCTTGATGAAGG
AAGAGGAGAAGAGGAAGATGGAGGTGAAGGAAAAAGAGGAGCGGCTGGCA
AAGGAGAGGGAGGAGAGGGAGGCGGAGGAGAGGAAGCAGGCGGCGGAGGA
GGCGGCCAAGAAGTCACGGGAGATAAATGAGGCAAGGGAGAAAGCTCGCT
TGGACAGGCAGAGGGAGGAGGGGTAA
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protein sequence of NO16G01460.1

>NO16G01460.1-protein ID=NO16G01460.1-protein|Name=NO16G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MVDKYKMEMNKALTRLVEMEGENTVLKAKLASAQKRNAELEKEVGGLRRQ
QQHQQHQQQATGPDAGVTAVAAAVPGVAPVAREERERLLTYVQTIVDAGD
ENLSRQLMDKIKLHYPSFGAGGDYSINVYGYDDVTIRALLAFCEPLFEAE
EEGEEQQQQQEPLPPPQQPEDVQQDQNGHARQQDVETQQQQQQQQHQHQQ
QQKRDRPADLDDEDEDEEEREKRAKSSGSSIEGIGEEGGGSSAVAEEERM
EQEKEPEEEEDDDEVEAGGKDAHMEEDEEEEDEEEGKGGSGPSSNLQKWL
APGATATEEGAGANEGEGEEGGEKKGVGEGGKDREGEEKKRKEEGGNDLW
DAARQMKEEELKRERERVVEEMQRQEALMKEEEKRKMEVKEKEERLAKER
EEREAEERKQAAEEAAKKSREINEAREKARLDRQREEG*
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Synonyms
Publications