NO16G01450, NO16G01450 (gene) Nannochloropsis oceanica

Overview
NameNO16G01450
Unique NameNO16G01450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3365
Alignment locationchr16:444039..447403 +

Link to JBrowse

Properties
Property NameValue
DescriptionSmall rna degrading nuclease 5
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:444039..447403 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR013520Exonuclease_RNaseT/DNA_pol3
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Homology
BLAST of NO16G01450 vs. NCBI_GenBank
Match: EWM23992.1 (small rna degrading nuclease 5 [Nannochloropsis gaditana])

HSP 1 Score: 465.7 bits (1197), Expect = 3.200e-127
Identity = 287/475 (60.42%), Postives = 329/475 (69.26%), Query Frame = 0
Query:  415 MAALDCEMCQTTEGMEVTRLTLVDDQRRVLLDSFVKPHNHITDYLTKYSGITPEIMAACSTTLEQVQVALLRLVRAETLLVGHSLEQDLMVVGLIHLRCADTAILYPHPRGPQCRFALRMLVKKHLGRVIQDSVHGHCSREDAEATLDLVKLKIEHGPDFGVEGEEGGEG-RGGEEVLVRGKENFLEQLGSRFGKRCTLLDQRETLVRVIRGSSTSAVVCRSNEEVVAKAKAQGRQALAPHFMWASLMAARPLTIESLEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQHKRFLYQESIMEMVEPDLLRVDQQLAELHDSLPTNTLLFVLAQPDVALPTQLTHQRRVALHSRRATLPWTEEHEATLEELAKAAQKGVVMMRVR 889
            MAALDCEMC TTEGMEVTRLTLVD++  VLLDSFVKP++ I D+LTKYSGITPEI+A C T LEQVQVALLRLVRA+T+LVGHSLEQDLMV GLIHLRC DTA+LY HPRGP+ RFALR+L K++L RVIQDS  GHCSREDA A LDLVKLK+E GPDFGVE     EG  GGEE   RG+E+FLE+LG + GKRCTLLDQ +TLVR++RGS+ SAVVCRSNEEV++KAKAQ RQ L PHF+WAS   ARPLT+E+L                                                                    XXXXXXXXXXXXXXXXXXXXXXX                              RQHKRF+Y+ESIMEMV+PDLLR DQQLAEL+++L  NTL+FV+AQPDVALPTQL+ QR   + SR+ATL WT+EHEATL+EL+KAAQKGV+MMRVR
Sbjct:    1 MAALDCEMCLTTEGMEVTRLTLVDEKGEVLLDSFVKPYHDIRDHLTKYSGITPEIIAGCETRLEQVQVALLRLVRADTILVGHSLEQDLMVTGLIHLRCVDTAMLYAHPRGPRLRFALRVLAKRYLQRVIQDSAQGHCSREDAVAALDLVKLKVERGPDFGVE-----EGFSGGEE--TRGRESFLERLGGKHGKRCTLLDQSDTLVRIVRGSTASAVVCRSNEEVLSKAKAQARQVLPPHFLWASFAGARPLTLETLAT------------KRKRKLYQMQQERIEADASQALATARFAEAGGGTEREAMKLRQRGEVTSVLSRTXXXXXXXXXXXXXXXXXXXXXXXTRITTAILRDTSGSPTGLTLTATASTAAATRQHKRFVYRESIMEMVDPDLLRTDQQLAELYEALAPNTLVFVVAQPDVALPTQLSSQRAAVVGSRKATLSWTQEHEATLQELSKAAQKGVLMMRVR 456          
BLAST of NO16G01450 vs. NCBI_GenBank
Match: GAQ87994.1 (Exonuclease family protein [Klebsormidium nitens])

HSP 1 Score: 211.1 bits (536), Expect = 1.400e-50
Identity = 121/246 (49.19%), Postives = 159/246 (64.63%), Query Frame = 0
Query:  415 MAALDCEMCQTTEGMEVTRLTLVDDQRRVLLDSFVKPHNHITDYLTKYSGITPEIMAACSTTLEQVQVALLRLVRAETLLVGHSLEQDLMVVGLIHLRCADTAILYPHPRGPQCRFALRMLVKKHLGRVIQDSVHGHCSREDAEATLDLVKLKIEHGPDFGVEGEEGGEGRGGEEVLVRGKENFLEQLGSRFGKRCTLLDQRETLVRVIRGSSTSAVVCRSNEEVVAKAKAQGRQALAPHFMWASL 661
            M A+DCEMC T  G+E+TR+TLV  + +VLLD  VKP N I DY TK+SGIT E++   +TTL+ +Q  LL LV AET+LVGHSL+ DL  + LIH    DTA+ +PHPRGP  + ALR+L ++HL R IQ    GH S EDA AT++L +LKI++GP F            GE   + G E+ +E LG R GKRCTL+D+R  L R   G+S  AV+  S++EVVAK + +     A  F+WA L
Sbjct:  391 MVAVDCEMCYTEAGLELTRVTLVSGKGKVLLDKLVKPTNPIRDYNTKFSGITAEMLQDVTTTLQDIQAELLELVSAETILVGHSLQSDLQALKLIHGNNIDTALAFPHPRGPPYKPALRVLAERHLHRTIQGGDKGHDSVEDARATMELAQLKIQNGPSF------------GEARAIIG-ESLIELLG-RKGKRCTLVDRRRLLRRFAVGTS-GAVIAESDDEVVAKVRKEAHTP-ATRFLWARL 620          
BLAST of NO16G01450 vs. NCBI_GenBank
Match: GAX92572.1 (exonuclease, putative [Pythium insidiosum])

HSP 1 Score: 204.5 bits (519), Expect = 1.300e-48
Identity = 112/259 (43.24%), Postives = 150/259 (57.92%), Query Frame = 0
Query:  405 AEERRSRPYRMAALDCEMCQTTEGMEVTRLTLVDDQRRVLLDSFVKPHNHITDYLTKYSGITPEIMAACSTTLEQVQVALLRLVRAETLLVGHSLEQDLMVVGLIHLRCADTAILYPHPRGPQCRFALRMLVKKHLGRVIQDSVHGHCSREDAEATLDLVKLKIEHGPDFGVEGEEGGEGRGGEEVLVRGKENFLEQLGSRFGKRCTLLDQRETLVRVIRGSSTSAVVCRSNEEVVAKAKAQGRQALAPHFMWASLMAA 664
            A E R     + ALDCEMC+TT+G+E+TR+TL+D    VLLD +V+P N I DY T+YSGIT EIM +C+TTL  +Q   L LV AE +LVGHS+E DL+ + ++H R  DT +LYPHPRGP  R ALR L   +L R IQ    GHCS EDA ATL L++LK++HGP F    +E  + +   E+ +               K+  LL       R +   +   + C SN++VVA    Q      PHF W+ +  A
Sbjct:  201 AGESRQPEKLLLALDCEMCKTTKGVELTRVTLIDSTETVLLDEYVRPTNPIVDYCTEYSGITYEIMESCTTTLADIQKQFLELVPAEAILVGHSIENDLLALKVVHTRVIDTTVLYPHPRGPPFRSALRFLTSTYLNRAIQTGTDGHCSVEDAVATLQLLQLKVKHGPTFPSIEQEYSQKKVINELCL--------------AKKSVLLVDSLRSCRSLAAGTAHTLPCDSNDKVVASVVHQLTTGFPPHFTWSRVRGA 445          
BLAST of NO16G01450 vs. NCBI_GenBank
Match: XP_008620561.1 (hypothetical protein SDRG_16141 [Saprolegnia diclina VS20] >EQC25993.1 hypothetical protein SDRG_16141 [Saprolegnia diclina VS20])

HSP 1 Score: 203.0 bits (515), Expect = 3.900e-48
Identity = 108/249 (43.37%), Postives = 147/249 (59.04%), Query Frame = 0
Query:  410 SRPYRMAALDCEMCQTTEGMEVTRLTLVDDQRRVLLDSFVKPHNHITDYLTKYSGITPEIMAACSTTLEQVQVALLRLVRAETLLVGHSLEQDLMVVGLIHLRCADTAILYPHPRGPQCRFALRMLVKKHLGRVIQDSVHGHCSREDAEATLDLVKLKIEHGPDFGVEGEEGGEGRGGEEVLVRGKENFLEQLGSRFGKRCTLLDQRETLVRVIRGSSTSAVVCRSNEEVVAKAKAQGRQALAPHFMWA 659
            S   RM ALDCEMC+TT G+E+TR+++VD++ +VLLD+FV P   I DY T+YSGIT E +  C+ TL  +Q  +L LV A+T+LVGHS+E DL+ + L+H R  DT++LYPHP+GP  R ALR L   +L   IQ+   GHCS EDA  T+ L +LKIE GP F            G           + +L  R  K+  L+    +  R + GS+  A+ C + ++VV   K Q     APHF WA
Sbjct:  171 SSSQRMLALDCEMCKTTRGVELTRISIVDEEYKVLLDAFVLPECRIVDYCTQYSGITKETLEGCTNTLADIQAKVLALVDADTILVGHSIENDLLALRLLHRRVLDTSLLYPHPKGPPFRSALRFLTATYLKLQIQNDASGHCSIEDATCTMKLAQLKIEKGPGF-----------PGTHAKQHASRKLVSELAKR--KKSALIVDSASACRSLAGSTAGAIPCPTLDKVVHIVKQQLTTGCAPHFTWA 406          
BLAST of NO16G01450 vs. NCBI_GenBank
Match: CCA26123.1 (exonuclease putative [Albugo laibachii Nc14])

HSP 1 Score: 200.3 bits (508), Expect = 2.500e-47
Identity = 109/270 (40.37%), Postives = 155/270 (57.41%), Query Frame = 0
Query:  391 EEEREEGKEALGEEAEERRSRPYRMAALDCEMCQTTEGMEVTRLTLVDDQRRVLLDSFVKPHNHITDYLTKYSGITPEIMAACSTTLEQVQVALLRLVRAETLLVGHSLEQDLMVVGLIHLRCADTAILYPHPRGPQCRFALRMLVKKHLGRVIQDSVHGHCSREDAEATLDLVKLKIEHGPDFGVEGEEGGEGRGGEEVLVRGKENFLEQLGSRFGKRCTLLDQRETLVRVIRGSSTSAVVCRSNEEVVAKAKAQGRQALAPHFMWASL 661
            +E  +   E   +  ++ R     + A+DCEMC+TT+G+E+ RLTL+D    +LLD FV+P + I DY T+YSG TPE+M +CST LE +Q   L +V AE +L+GHS+E DL  + +IH R  DT +L+PHP+G   R +LR L  K L RVIQ+   GHCS EDA ATL LVKLK+ HGP+F               V  + K+  + +L     K+  L+   ++  R I   + S + C  N+++V+    Q      PHF WA L
Sbjct:  165 KEHEDPYIETALKRPDDNRDLKDLVFAVDCEMCKTTKGIELCRLTLIDSAETILLDDFVRPKSPIVDYCTQYSGFTPELMQSCSTRLEDIQKRFLDIVPAEAILIGHSIENDLCALRIIHRRIIDTVVLFPHPKGLPYRSSLRFLTAKFLHRVIQNDAQGHCSIEDAVATLQLVKLKVLHGPNF------------PSPVSHQAKKTLIRELCK--SKKSVLVVDSKSACRSIACDTASGIPCERNDQIVSATVKQLTTGFPPHFTWARL 420          
BLAST of NO16G01450 vs. NCBI_GenBank
Match: XP_012195456.1 (hypothetical protein SPRG_01699 [Saprolegnia parasitica CBS 223.65] >KDO33820.1 hypothetical protein SPRG_01699 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 195.3 bits (495), Expect = 8.100e-46
Identity = 109/261 (41.76%), Postives = 152/261 (58.24%), Query Frame = 0
Query:  413 YRMAALDCEMCQTTEGMEVTRLTLVDDQRRVLLDSFVKPHNHITDYLTKYSGITPEIMAACSTTLEQVQVALLRLVRAETLLVGHSLEQDLMVVGLIHLRCADTAILYPHPRGPQCRFALRMLVKKHLGRVIQDSVHGHCSREDAEATLDLVKLKIEHGPDFGVEGEEGGEGRGGEEVLVRGKENFLEQLGSRFGKRCTLLDQRETLVRVIRGSSTSAVVCRSNEEVVAKAKAQGRQALAPHFMWASLMAARPLTIESLEA 674
            +RM ALDCEMC+TT G+E+TR+++VD+  +VLLD FV P   I DY T++SGIT E +  C+ TL  +Q  +L LV ++T+LVGHS+E DL+ + L+H R  DT++LYPHP+GP  R ALR L   +L   IQ+   GHCS EDA  T+ L +LKI  GP F         G   ++   R   N L +L     K+  L+    +  R + GS+  A+ C + ++VV   K Q      PHF WA   AA P   ++  A
Sbjct:  171 HRMLALDCEMCKTTRGVELTRISIVDEDYKVLLDEFVLPECRIVDYCTQFSGITKETLEGCTNTLTDIQAKVLDLVTSDTILVGHSIENDLLALRLLHRRVLDTSLLYPHPKGPPFRSALRFLTATYLKLQIQNDASGHCSIEDATCTMKLAQLKIAKGPSF--------PGTQAKQHASRKLVNELAKL-----KKSALIVDSASACRSLAGSTAGAIPCPTLDKVVHIVKQQLTTGCPPHFTWA--RAALPTEFDAAAA 416          
BLAST of NO16G01450 vs. NCBI_GenBank
Match: XP_022153687.1 (small RNA degrading nuclease 5 [Momordica charantia])

HSP 1 Score: 195.3 bits (495), Expect = 8.100e-46
Identity = 116/248 (46.77%), Postives = 149/248 (60.08%), Query Frame = 0
Query:  410 SRPYRMAALDCEMCQTTEGMEVTRLTLVDDQRRVLLDSFVKPHNHITDYLTKYSGITPEIMAACSTTLEQVQVALLRLVRAETLLVGHSLEQDLMVVGLIHLRCADTAILYPHPRGPQCRFALRMLVKKHLGRVIQDSVHGHCSREDAEATLDLVKLKIEHGPDFGVEGEEGGEGRGGEEVLVRGKENFLEQLGSRFGKRCTLLDQRETLVRVIRGSSTSAVVCRSNEEVVAKAKAQGRQALAPHFMW 658
            S PY M ALDCEMC T EG E+TR+TLVD Q  ++LD  VKP N I DY T++SGIT E+++  +TTLE VQ   L LV  ET+L+GHSLE DLM + + H    DTA+LY HPRG   + ALR+L KK L R IQ S +GH S EDA AT++L  LKI+HGP+F           G    L+R K   L  LG   GK  + +D   T+ R     S+ A    S+EE +++AK +       HF+W
Sbjct:  213 SLPYEMLALDCEMCVTCEGFELTRITLVDMQGEIVLDKLVKPFNAIVDYNTRFSGITSEMLSGVTTTLEDVQRDFLNLVHKETILIGHSLENDLMALKMSHDLVVDTAVLYKHPRGGSHKTALRILAKKFLSREIQQSGNGHDSTEDARATMELALLKIKHGPEF-----------GSPPSLIRKK--LLTILGES-GKTSSFIDDVSTVKR-YSSESSHAFPVTSDEEALSRAKKEVINEKV-HFIW 444          
BLAST of NO16G01450 vs. NCBI_GenBank
Match: XP_022974960.1 (small RNA degrading nuclease 5-like [Cucurbita maxima])

HSP 1 Score: 194.9 bits (494), Expect = 1.100e-45
Identity = 118/248 (47.58%), Postives = 151/248 (60.89%), Query Frame = 0
Query:  410 SRPYRMAALDCEMCQTTEGMEVTRLTLVDDQRRVLLDSFVKPHNHITDYLTKYSGITPEIMAACSTTLEQVQVALLRLVRAETLLVGHSLEQDLMVVGLIHLRCADTAILYPHPRGPQCRFALRMLVKKHLGRVIQDSVHGHCSREDAEATLDLVKLKIEHGPDFGVEGEEGGEGRGGEEVLVRGKENFLEQLGSRFGKRCTLLDQRETLVRVIRGSSTSAVVCRSNEEVVAKAKAQGRQALAPHFMW 658
            S PY M ALDCEMC T EG E+TR+TLVD   +++LD  VKP N I +Y T++SGIT E++   +T+LE VQ  LL LV  ET+LVGHSLE DLM + + H R  DTA+LY HPRG   + ALR+L K+ L R IQ S +GH S EDA AT++L  LKI+HGP+F           G    LVR K   L  LG   GK  + +D   T+ R    SS +  V  S++E +AKAK +       HF+W
Sbjct:  219 SSPYEMLALDCEMCVTCEGFELTRITLVDMAGQIVLDKLVKPSNAIVNYNTRFSGITCEMLNEVTTSLEDVQKDLLNLVHKETVLVGHSLENDLMALKISHDRVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSSNGHDSVEDARATMELALLKIKHGPEF-----------GSPPSLVRKK--LLNILGES-GKTSSFIDDVSTVKRYSSESSHAFPVI-SDDEALAKAKKEAMNQRV-HFVW 450          
BLAST of NO16G01450 vs. NCBI_GenBank
Match: XP_004146782.1 (PREDICTED: small RNA degrading nuclease 5 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 2.400e-45
Identity = 116/246 (47.15%), Postives = 148/246 (60.16%), Query Frame = 0
Query:  412 PYRMAALDCEMCQTTEGMEVTRLTLVDDQRRVLLDSFVKPHNHITDYLTKYSGITPEIMAACSTTLEQVQVALLRLVRAETLLVGHSLEQDLMVVGLIHLRCADTAILYPHPRGPQCRFALRMLVKKHLGRVIQDSVHGHCSREDAEATLDLVKLKIEHGPDFGVEGEEGGEGRGGEEVLVRGKENFLEQLGSRFGKRCTLLDQRETLVRVIRGSSTSAVVCRSNEEVVAKAKAQGRQALAPHFMW 658
            P  M ALDCEMC T EG E+TR+TLVD + RVLLD  VKP N I DY T+YSGIT E+++  +T+LE VQ   L LV  ET+LVGHSLE DLM + + H    DTA+LY HPRG   + ALR+L K+ L R IQ S +GH S EDA AT++L  LKI+HGPDF           G    L+R K   L  LG   GK  + +D   T+ R     S+ A    S++E +++AK +       HF+W
Sbjct:  214 PNEMLALDCEMCVTCEGFELTRITLVDMEGRVLLDKLVKPSNAIVDYNTRYSGITCEMLSGVTTSLEDVQRIFLNLVHKETVLVGHSLENDLMALRISHDLVVDTAVLYKHPRGGSHKSALRILAKRFLSREIQQSGNGHDSIEDARATMELALLKIKHGPDF-----------GSPPSLIRKK--LLNILGES-GKTSSFIDDIATVKRYC-SESSHAFPVTSDDEALSRAKKEAMNEKV-HFIW 443          
BLAST of NO16G01450 vs. NCBI_GenBank
Match: CDP11992.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 193.4 bits (490), Expect = 3.100e-45
Identity = 110/246 (44.72%), Postives = 154/246 (62.60%), Query Frame = 0
Query:  412 PYRMAALDCEMCQTTEGMEVTRLTLVDDQRRVLLDSFVKPHNHITDYLTKYSGITPEIMAACSTTLEQVQVALLRLVRAETLLVGHSLEQDLMVVGLIHLRCADTAILYPHPRGPQCRFALRMLVKKHLGRVIQDSVHGHCSREDAEATLDLVKLKIEHGPDFGVEGEEGGEGRGGEEVLVRGKENFLEQLGSRFGKRCTLLDQRETLVRVIRGSSTSAVVCRSNEEVVAKAKAQGRQALAPHFMW 658
            PY + ALDCEMC T EG E+TR+TLVD + +V+LD  +KP N I DY T+YSGIT E++   +TTL+ +Q   L+LV  ET+LVGHSLE DL+ + + H    DTA+LY HPRG   + ALR+L ++ L R IQDS +GH S EDA AT++L  LKI HGPDF           G     VR K   L  LG  +GK  +++D   ++VR      + ++V  S+++ ++KA+ + R  +  HF+W
Sbjct:  257 PYEILALDCEMCITREGFELTRVTLVDVKGQVVLDKLIKPSNPIIDYNTRYSGITDEMLNGVTTTLKDIQEEFLQLVYKETILVGHSLENDLLALKIFHDLVIDTAVLYKHPRGKSFKTALRVLSRRFLSREIQDSGNGHDSIEDARATMELALLKIRHGPDF-----------GSPPSFVRKK--LLTVLGD-YGKTSSIID-GISIVRRYSSELSRSIVVSSDDDALSKARKEVRNDMV-HFIW 486          
The following BLAST results are available for this feature:
BLAST of NO16G01450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23992.13.200e-12760.42small rna degrading nuclease 5 [Nannochloropsis ga... [more]
GAQ87994.11.400e-5049.19Exonuclease family protein [Klebsormidium nitens][more]
GAX92572.11.300e-4843.24exonuclease, putative [Pythium insidiosum][more]
XP_008620561.13.900e-4843.37hypothetical protein SDRG_16141 [Saprolegnia dicli... [more]
CCA26123.12.500e-4740.37exonuclease putative [Albugo laibachii Nc14][more]
XP_012195456.18.100e-4641.76hypothetical protein SPRG_01699 [Saprolegnia paras... [more]
XP_022153687.18.100e-4646.77small RNA degrading nuclease 5 [Momordica charanti... [more]
XP_022974960.11.100e-4547.58small RNA degrading nuclease 5-like [Cucurbita max... [more]
XP_004146782.12.400e-4547.15PREDICTED: small RNA degrading nuclease 5 [Cucumis... [more]
CDP11992.13.100e-4544.72unnamed protein product [Coffea canephora][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL154nonsL154Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR036ngnoR036Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003138NSK003138Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01450.1NO16G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|80304gene_6026Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100027g23gene6494Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01450.1NO16G01450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01450 ID=NO16G01450|Name=NO16G01450|organism=Nannochloropsis oceanica|type=gene|length=3365bp
TCCTTGTCCTACGGTGGCTCTTCTTTGTGTTGTGTGCGTCAAGGAAGTGG
GAATGCCTATAAGTTCGTCGTTAGTTGAGCGATGATGCACGTGGATGGTG
AGGGAGTCGGACTCCCAGCCGCCGGCGGGCTCCTTGGGCAGCGAGATGCG
GTTATGCCAAGGGTGTTTCGGCAGCAACAGGATCTGCTTGAGCAGCTTCG
TCCATCACTTGATCCCGTACCGCTCGTGCGGAGCAGGCCCCTTGACCACG
GGGTCCACCACAAACTCATTTTTGGCATGACTACCAGATGCTTGTTGAGC
CTCGCCGCAAGGCCTGGAGATAAACACAAATTCGAGACCTCCTCCAAGGA
TTTTCTGATGTCCTTTAGTGCCGTGGCCGCTCTCAGGCCCCCGAATGTGC
TAGGTTTCTATACACTCACGCTTCCCTTCTACTACTATCATGCAAAACCC
AGAGAGGTGTTCGTGCGGATTGCATAGGAAAACAATCTAATAGCGTGCGT
CGCCTCCATCCAAAGCTGTCATGACCTCGCACCCCCCCGCTGCTGCTGCC
TCGGAAGACAGCCCCTCGACGCCATGCCCAACACTGCCATACGCCGGCAA
ATATTCAGCAGGAGAAGCCAACGAAGCAGTATTGGACAAAATGACGCGTC
GGAAGCTTAAGAAATTGCGGAAGAAAATGCGGAGCGGGCAGCTCTCGTTA
CACGACACGGAGGAATGCAAGAAGCTTGGAATTGTGGTGCGGGCCGAGGT
GGATTGGAGCGAGGAAATTAAGGATGGCCGACGGCCTTGCTTGGGCCCGG
GGGACTTGCGCCGTGCGATTGTGCACATCTTGACGGCTGGTGTCAATGCA
CATTGCCCGAGTTGGCTGCGGTTGGTGAATGCGCGGCTGTTGACGTCTGT
GGTGGTGGTGAGCTTGGCAGGGGTGGAACCCGCGTACTTGCAAGATAATT
TATCACAACTACCTTTTCTGCAAGCATGCTCGAGGCCAGTGGATTTGCGG
TTGTACCATGGACGGCACCCGCGCCGATGTATTTATTCCCTCTTGTTTTA
CCCTCGTCCGAAGCAGGGAGGGAAGGAGGGAGAAGGAAAATGCGGTGGCG
GTGTGGGGGTAGGAAAGAGTGGTATATTGGAAAGTGAGGAGTCGAAAAAG
GGAAGAAAGCGCGGTCGATCGAACGGCGACGAATATGATCACGAGGTGGA
GGATGGGGAGGAGGAGGGGGAAGGGGAGGAAGGGGAGGAAGAAGTGGAAT
GCTTGCCTGAAGATGATGACGTGACTGTGAGTGTGGATCCGGCAGAGCGA
TACGTATTGAGTCTTCCTCAATTAAAGCTGGCCGGATTTCCCTTGCCACC
GGGGGGGGTGATTGTACGGGAGCCCCCGAGTCGAAGCCCGACGGAGAAGG
AGGGAGGGCATGGATACCAGGATAATGATGAATATGAGGGGGAGGATGGG
AAGGACGGGGGGGAACATGATGATGACATTGGCTGTCTCGTCACTGCTGA
AGGGGGGAATATGGAGAGTGGGGCCGGCATGGAGAAAAAGAGGCGGTGGT
TGGACTGTGATGAGGAGGGAAGGTGGGGAGGAGAGACGGGAGAGCTGCTT
CCGCCTTTAGAGGAAGCGAGGCAGATCTTGGGCGGCTTAAATGCGATTAA
GGTCGGCGGCGTTACCTGCTGCTTCTATGAGACCTTGGGAGAGGAGGAGA
GGGAGGAAGGGAAGGAGGCGCTGGGAGAGGAGGCGGAGGAGAGGAGGAGT
AGGCCTTgtgagtagtttggggattgaggttgggagggagggagggaggc
atataatatgtcctatgcgcgtgtcatgaatgaagtaaaacgtgcctttt
tctctttgtcatttcactgcgacctatgttacaaccactccaagtccctc
attccctccctccctccctccctttctgcttctagACAGGATGGCTGCCC
TGGACTGCGAAATGTGCCAAACCACTGAAGGGATGGAAGTAACAAGGCTA
ACGCTCGTGGATGACCAACGCCGAGTACTGCTTGACTCGTTCGTCAAGCC
GCACAATCACATTACGGATTACCTGACCAAATATTCAGGGATCACACCCG
AGATCATGGCCGCCTGCTCCACGACTCTGGAGCAGGTTCAAGTGGCGCTG
CTTCGCCTGGTGCGGGCCGAGACCTTGCTCGTCGGACATTCTCTGGAGCA
GGATCTGATGGTGGTGGGCTTGATTCATTTACGGTGTGCGGATACTGCGA
TCCTCTACCCTCATCCCAGGGGCCCGCAGTGCCGTTTTGCGCTGCGAATG
CTTGTGAAGAAGCACCTGGGGCGGGTCATCCAAGACTCGGTTCACGGACA
TTGCAGTCGGGAAGACGCCGAGGCGACGTTGGATTTGGTTAAATTGAAGA
TCGAGCATGGGCCGGACTTTGGGGTGGAGGGGGAGGAGGGAGGGGAAGGC
AGAGGCGGGGAGGAGGTGCTTGTACGGGGGAAGGAGAATTTTCTGGAACA
GTTGGGGAGTCGGTTTGGGAAGAGGTGTACGCTGCTTGATCAGAGAGAAA
CGCTGGTGCGGGTAATTAGGGGCAGTAGTACGAGTGCTGTGGTGTGTCGG
TCGAATGAGGAGGTGGTGGCCAAGGCCAAGGCGCAGGGGAGGCAGGCGTT
GGCACCTCACTTTATGTGGGCGTCGTTGATGGCCGCGCGGCCCTTAACGA
TAGAGAGCTTGGAGGCTCGGAGAAAGAGGAAAGCTCATCATCATCAGCAG
CAGCGGATGGAGGCTGAGGCGACAGAGGCCGCGGCAGCAGCAGCGGTGTT
GGAGGAGGAGGCGGCTACGGAGAGGGACAGAGGGAGAAAGGGAAAGAAGC
GGAAGGGAGATGTGATTAGCTTGATGAGTCGAAATGGAAGCAGCAGTAGT
TTAAGCAGCAGCAGCAGCAGCAGCAGTGGCAGTAGTTGGCGTTCGGCTGC
CACCTTGACGAACAGCAGTAGCAGCAGCCGGATGACGACGACGACAACGA
CAAGCCTTTGCGAGGCTACGACCACTACAACTCTCACCCTCACATCCTCG
GCAACAACAACAGCGATGACAGCTCGACAACATAAACGATTCCTCTATCA
GGAGTCGATCATGGAGATGGTTGAGCCAGACCTTCTGCGCGTCGACCAGC
AACTGGCAGAGCTCCACGATTCCCTCCCCACCAACACCCTCCTCTTCGTC
CTCGCCCAACCCGACGTGGCCCTCCCCACTCAACTCACACACCAACGACG
CGTAGCCTTGCATTCGCGCAGAGCCACCCTACCATGGACGGAAGAACATG
AAGCGACGCTGGAGGAGCTGGCAAAGGCAGCACAGAAGGGGGTGGTGATG
ATGCGGGTGCGTTGA
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protein sequence of NO16G01450.1

>NO16G01450.1-protein ID=NO16G01450.1-protein|Name=NO16G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=889bp
MTSHPPAAAASEDSPSTPCPTLPYAGKYSAGEANEAVLDKMTRRKLKKLR
KKMRSGQLSLHDTEECKKLGIVVRAEVDWSEEIKDGRRPCLGPGDLRRAI
VHILTAGVNAHCPSWLRLVNARLLTSVVVVSLAGVEPAYLQDNLSQLPFL
QACSRPVDLRLYHGRHPRRCIYSLLFYPRPKQGGKEGEGKCGGGVGVGKS
GILESEESKKGRKRGRSNGDEYDHEVEDGEEEGEGEEGEEEVECLPEDDD
VTVSVDPAERYVLSLPQLKLAGFPLPPGGVIVREPPSRSPTEKEGGHGYQ
DNDEYEGEDGKDGGEHDDDIGCLVTAEGGNMESGAGMEKKRRWLDCDEEG
RWGGETGELLPPLEEARQILGGLNAIKVGGVTCCFYETLGEEEREEGKEA
LGEEAEERRSRPYRMAALDCEMCQTTEGMEVTRLTLVDDQRRVLLDSFVK
PHNHITDYLTKYSGITPEIMAACSTTLEQVQVALLRLVRAETLLVGHSLE
QDLMVVGLIHLRCADTAILYPHPRGPQCRFALRMLVKKHLGRVIQDSVHG
HCSREDAEATLDLVKLKIEHGPDFGVEGEEGGEGRGGEEVLVRGKENFLE
QLGSRFGKRCTLLDQRETLVRVIRGSSTSAVVCRSNEEVVAKAKAQGRQA
LAPHFMWASLMAARPLTIESLEARRKRKAHHHQQQRMEAEATEAAAAAAV
LEEEAATERDRGRKGKKRKGDVISLMSRNGSSSSLSSSSSSSSGSSWRSA
ATLTNSSSSSRMTTTTTTSLCEATTTTTLTLTSSATTTAMTARQHKRFLY
QESIMEMVEPDLLRVDQQLAELHDSLPTNTLLFVLAQPDVALPTQLTHQR
RVALHSRRATLPWTEEHEATLEELAKAAQKGVVMMRVR*
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Synonyms
Publications