NO16G01420, NO16G01420 (gene) Nannochloropsis oceanica

Overview
NameNO16G01420
Unique NameNO16G01420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length894
Alignment locationchr16:437441..438334 +

Link to JBrowse

Properties
Property NameValue
DescriptionLow-density lipoprotein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:437441..438334 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO16G01420 vs. NCBI_GenBank
Match: EWM23974.1 (low-density lipoprotein [Nannochloropsis gaditana])

HSP 1 Score: 204.1 bits (518), Expect = 5.300e-49
Identity = 117/239 (48.95%), Postives = 148/239 (61.92%), Query Frame = 0 
Query:    5 TAPALCLPASHVVDAQAPRLPSNDGILTA-----QEHGNTQLLPAAAARRRSSAGEVAPQAHRIFRAQQHNH------------QFEFWPREALVDVLIQHNIELRHEAELTHEHLVHICNCFWSDKPVPPLPQPWLSEIQDVAEAAALTIQQRWIAHVTIRHQRQMLARQKSDRALREEGILSPPGAADARALHAVDASPPTFQAAHRELEQVWYPPDMKLAQEYADWNDPRVGGPGG 227
            ++P L +PAS   DA     PS D  +++     +  G TQ     + R        AP A RI      N              F  W R+ALV VL+QHN+ELR EAEL H +LVHICN ++++KP P +P+PW  E+Q  AE AA +IQ+ WI HV  R +R MLA Q SDRALR EGILSPPG++DA+ALHA  A  PT  AA RELEQ WYPPD++LA++YA+WN PR+GGPGG
Sbjct:    8 SSPELFIPASPAADAP----PSTDVDISSMSQLRKNSGQTQF----SKRPNYIEASNAPLAQRIISRDSQNEDENGSEKSKQPLSFAHWTRQALVHVLVQHNVELRREAELPHGYLVHICNTYFANKPAPLIPEPWPVELQVSAETAACSIQRAWIRHVATRRKRSMLAHQTSDRALRAEGILSPPGSSDAKALHAA-ADCPTPLAAGRELEQPWYPPDLELARDYAEWNHPRMGGPGG 237
The following BLAST results are available for this feature:
BLAST of NO16G01420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23974.15.300e-4948.95low-density lipoprotein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL154nonsL154Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR036ngnoR036Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003140NSK003140Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01420.1NO16G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|543448gene_6024Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100027g25gene6496Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01420.1NO16G01420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01420 ID=NO16G01420|Name=NO16G01420|organism=Nannochloropsis oceanica|type=gene|length=894bp
ATGCCGGAGCCCACGGCCCCCGCGCTCTGCCTTCCCGCGAGCCATGTCGT
TGACGCACAAGCACCACGACTACCCTCGAATGACGGCATACTCACGGCCC
AAGAGCATGGCAATACACAATTATTGCCAGCAGCAGCAGCTCGTCGAAGG
AGCTCGGCAGGAGAAGTCGCCCCCCAAGCCCATCGAATATTCCGTGCTCA
ACAACACAACCACCAATTCGAGTTTTGGCCTCGCGAGGCATTGGTGGACG
TGCTGgtacgtggatgcgatgtgtgcgtggatgtgggctcatatatcagc
agatagtcgcaccattctcttttttcacgtcttgcccaccctccacagAT
TCAACATAATATTGAGCTACGCCACGAAGCCGAACTTACGCATGAGCATC
TCGTGCACATTTGCAATTGCTTTTGGTCAGATAAGCCTGTTCCTCCTTTG
CCCCAACCCTGGCTATCCGAAATTCAAGACGTGGCGGAAGCAGCCGCTCT
CACAATCCAACAACGCTGGATCGCCCATGTGACCATCCGCCATCAAAGAC
AAATGCTGGCTCGTCAAAAATCCGACCGTGCTCTACGAGAAGAGGGCATC
TTGTCACCTCCTGGGGCTGCCGATGCCCGGGCGTTACATGCGGTGGATGC
AAGTCCTCCCACTTTTCAGGCGGCTCATCGCGAGCTCGAGCAGGTGTGGT
ATCCTCCTGACATGAAGCTAGCTCAAGAATACGCCGATTGGAATGACCCT
AGGGTGGGAGGCCCAGGGGGGCACACTTCTCGTTCTGCAAAACGACGACG
GGCAGGTATTGTGTGTTGGGTGGTTGCGGGGAGCAGTTGGATCTGTGGGA
TGAAGGGCAAGTCTCTGAATTGTCATCATTTGGCAGCAGTATGA
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protein sequence of NO16G01420.1

>NO16G01420.1-protein ID=NO16G01420.1-protein|Name=NO16G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MPEPTAPALCLPASHVVDAQAPRLPSNDGILTAQEHGNTQLLPAAAARRR
SSAGEVAPQAHRIFRAQQHNHQFEFWPREALVDVLIQHNIELRHEAELTH
EHLVHICNCFWSDKPVPPLPQPWLSEIQDVAEAAALTIQQRWIAHVTIRH
QRQMLARQKSDRALREEGILSPPGAADARALHAVDASPPTFQAAHRELEQ
VWYPPDMKLAQEYADWNDPRVGGPGGHTSRSAKRRRAGIVCWVVAGSSWI
CGMKGKSLNCHHLAAV*
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Synonyms
Publications