NO16G01280, NO16G01280 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO16G01280 vs. NCBI_GenBank
Match: EWM24026.1 (hypothetical protein Naga_100040g46 [Nannochloropsis gaditana]) HSP 1 Score: 320.9 bits (821), Expect = 4.300e-84 Identity = 156/240 (65.00%), Postives = 184/240 (76.67%), Query Frame = 0 Query: 57 KAFVLGGLLLGGTAVPT--PLVQPGDGRLNFVPAAAGAAVLNDTPLPAVEVEAMSTGRAADFIKLNCQGILKAYRETGPIPSFLYRGENVNRPSVMKCMPDLMDPSTYVEGQEAVEFFGKVETAMKDLPVKPSVGHLATSDMRRAAAWGTPVSVWPIGKEIHYAWLNDAQNFWPVPPEKRGITVKDISACINREIQVDKGLDMAVKMGHEVMLQTGDHGFVVIPVAYERELRARLNLGYE 295 KA GGLLLG TAV T P QP F A+ + + +P E +AMSTGRAA+FIK +CQGIL+AY ETG P FLYRGEN+NRP+++KC PDLMD +TY EG+EA FF K+E AM+ LPV+PS+GHLATSDMR AAAWGTP SVWP+G E+HYAWL DA+ FWPV EKR I+V DI AC+ REIQVD+ LDMAVKMGHEVML TG+ GF+V+PVAYERE+RARL LGYE Sbjct: 78 KALAFGGLLLGNTAVQTLSPWRQPLHLVTRFTDPASASEL--GGGMPQFEAQAMSTGRAAEFIKQHCQGILRAYNETGATPVFLYRGENINRPTLLKCPPDLMDVNTYQEGKEAAAFFAKMEEAMEGLPVRPSLGHLATSDMRSAAAWGTPCSVWPLGNELHYAWLRDAKAFWPVRAEKRDISVDDIRACVKREIQVDQNLDMAVKMGHEVMLSTGEFGFLVVPVAYEREVRARLGLGYE 315
BLAST of NO16G01280 vs. NCBI_GenBank
Match: XP_002182852.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45588.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 95.1 bits (235), Expect = 3.800e-16 Identity = 59/216 (27.31%), Postives = 102/216 (47.22%), Query Frame = 0 Query: 79 GDGRLNFVPAAAGAAVLNDTPLPAVEVEAMSTGRAADFIKLNC-QGILKAYRETGPIPSFLYRGENVNRPSVMKCMPDLMDPSTYVEGQEAVEFFGKVETAMKDLPV--KPSVGHLATSDMRRAAAWGTPVSVWPIGKEIHYAWLNDAQNFWPVPPEKRGITVKDISACINREIQVDKGLDMAVKMGHEVMLQTGDHG------FVVIPVAYEREL 286 G R F AA + V A+ + +S +A ++ +C L + +TG LYRGEN++ +++ PDL+ P TY ++A+ +F +E ++ V PS GH+AT++ AA WG P SVWP+G + + W P R + C + ++ +++ L +A+K E++ T G ++ IP +R L Sbjct: 4 GSRRAFFTVGAASSLVWTQ---EAMTTQTISLQKAITIVEKHCPHDFLSSVVKTG---RCLYRGENMDSSTIVSARPDLLQPETY-GNEDALAYFQCIEDQLRGASVGALPSTGHIATTEKSEAARWGVPASVWPLGGDFQFVW-----------PRSRRLIFPGADRCPDNDLVLNQDLSVALKYPREILFATNATGQIEASSYLAIPGELDRYL 201
BLAST of NO16G01280 vs. NCBI_GenBank
Match: XP_005838804.1 (hypothetical protein GUITHDRAFT_150822 [Guillardia theta CCMP2712] >EKX51824.1 hypothetical protein GUITHDRAFT_150822 [Guillardia theta CCMP2712]) HSP 1 Score: 89.7 bits (221), Expect = 1.600e-14 Identity = 56/165 (33.94%), Postives = 84/165 (50.91%), Query Frame = 0 Query: 117 IKLNCQGILKAYRETGPIPSFLYRGENVNRPSVMKCMPDLMDPSTYVEGQEAVEFFGKVETAMKDLP-----VKPSVGHLATSDMRRAAAWGTPVSVWPIGKEIHYAWLNDAQNFWPVPPEKRGITVKDISACINREIQVDKGLDMAVKMGHEVMLQTGDHGFVV 277 I C+ +++A R +G LYRG + +K DL+DP+TY G++ FF +E +K+ P V+PS GH+ ++D + AA WG S WP G Y WL + F+P P G R + VD+GLD A++ G E+M DH ++V Sbjct: 76 IAKECRPMIEAVRRSG--GHLLYRGYDEATCKRVKEEADLLDPATY--GEDGARFFLAMEQWLKERPSFTRSVRPSCGHIGSADHKVAARWGIAHSCWPAG-SFSYGWLRGSDIFYP-PSVDVGEENAGHRDFFERNMVVDEGLDFALRHGKEIMF-ASDHYWIV 233
BLAST of NO16G01280 vs. NCBI_GenBank
Match: CBN78376.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 84.7 bits (208), Expect = 5.100e-13 Identity = 57/199 (28.64%), Postives = 89/199 (44.72%), Query Frame = 0 Query: 138 LYRGENVN--------RPSVMKCMPDLMDPSTYVEGQEAVEFFGKVETAM-KDL--PVKPSVGHLATSDMRRAAAWGTPVSVWPIGKEIHYAWLNDAQNFWPVPPEKRGITVKDISACINRE-----------------IQVDKGLDMAVKMGHEVMLQTGDHG--------------FVVIPVAYERELRARLNLGYE 295 LYRGE ++ P + PDL+D TY A E+F + M KD P +PS H+ S+ AAAWGT S+WP+G + Y+WL+ W E+ G + NRE ++++ GL A++ HEV++++G+ FV IP + +R +R+ L + E Sbjct: 32 LYRGEALSLGGGGKGGGPRAVTEKPDLLDAETY-GSAVAAEYFRAADAIMDKDFQAPARPSNAHIMVSNKEAAAAWGTACSIWPLGDSLDYSWLHSCAELWDPRWERPGSRSSPPNG--NREAFFWRDEDGMRRFLAEGLRINSGLSEAIRGRHEVLVRSGEFSFGSEARKGAVIQDTFVCIPASEDRAVRSALGIPAE 227
BLAST of NO16G01280 vs. NCBI_GenBank
Match: OSX80079.1 (hypothetical protein BU14_0060s0044 [Porphyra umbilicalis]) HSP 1 Score: 68.2 bits (165), Expect = 5.000e-8 Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 0 Query: 154 PDLMDPSTYVEGQEAVEFFGKVETAM--KDLPVKPSVGHLATSDMRRAAAWGTPVSVWPIGKEIHYAW 220 PDL+D +TY G FFG+++ A+ V PSVGH+ T D AAAWGTPV+VWP+G + Y W Sbjct: 172 PDLLDEATY--GAAGAAFFGRLDRALTAAGARVTPSVGHILTGDAAAAAAWGTPVTVWPVG-PVGYVW 236 The following BLAST results are available for this feature:
BLAST of NO16G01280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO16G01280 ID=NO16G01280|Name=NO16G01280|organism=Nannochloropsis oceanica|type=gene|length=1821bpback to top protein sequence of NO16G01280.1 >NO16G01280.1-protein ID=NO16G01280.1-protein|Name=NO16G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=295bpback to top Synonyms
Publications
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