NO16G01280, NO16G01280 (gene) Nannochloropsis oceanica

Overview
NameNO16G01280
Unique NameNO16G01280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1821
Alignment locationchr16:395992..397812 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:395992..397812 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO16G01280 vs. NCBI_GenBank
Match: EWM24026.1 (hypothetical protein Naga_100040g46 [Nannochloropsis gaditana])

HSP 1 Score: 320.9 bits (821), Expect = 4.300e-84
Identity = 156/240 (65.00%), Postives = 184/240 (76.67%), Query Frame = 0
Query:   57 KAFVLGGLLLGGTAVPT--PLVQPGDGRLNFVPAAAGAAVLNDTPLPAVEVEAMSTGRAADFIKLNCQGILKAYRETGPIPSFLYRGENVNRPSVMKCMPDLMDPSTYVEGQEAVEFFGKVETAMKDLPVKPSVGHLATSDMRRAAAWGTPVSVWPIGKEIHYAWLNDAQNFWPVPPEKRGITVKDISACINREIQVDKGLDMAVKMGHEVMLQTGDHGFVVIPVAYERELRARLNLGYE 295
            KA   GGLLLG TAV T  P  QP      F   A+ + +     +P  E +AMSTGRAA+FIK +CQGIL+AY ETG  P FLYRGEN+NRP+++KC PDLMD +TY EG+EA  FF K+E AM+ LPV+PS+GHLATSDMR AAAWGTP SVWP+G E+HYAWL DA+ FWPV  EKR I+V DI AC+ REIQVD+ LDMAVKMGHEVML TG+ GF+V+PVAYERE+RARL LGYE
Sbjct:   78 KALAFGGLLLGNTAVQTLSPWRQPLHLVTRFTDPASASEL--GGGMPQFEAQAMSTGRAAEFIKQHCQGILRAYNETGATPVFLYRGENINRPTLLKCPPDLMDVNTYQEGKEAAAFFAKMEEAMEGLPVRPSLGHLATSDMRSAAAWGTPCSVWPLGNELHYAWLRDAKAFWPVRAEKRDISVDDIRACVKREIQVDQNLDMAVKMGHEVMLSTGEFGFLVVPVAYEREVRARLGLGYE 315          
BLAST of NO16G01280 vs. NCBI_GenBank
Match: XP_002182852.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45588.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 95.1 bits (235), Expect = 3.800e-16
Identity = 59/216 (27.31%), Postives = 102/216 (47.22%), Query Frame = 0
Query:   79 GDGRLNFVPAAAGAAVLNDTPLPAVEVEAMSTGRAADFIKLNC-QGILKAYRETGPIPSFLYRGENVNRPSVMKCMPDLMDPSTYVEGQEAVEFFGKVETAMKDLPV--KPSVGHLATSDMRRAAAWGTPVSVWPIGKEIHYAWLNDAQNFWPVPPEKRGITVKDISACINREIQVDKGLDMAVKMGHEVMLQTGDHG------FVVIPVAYEREL 286
            G  R  F   AA + V       A+  + +S  +A   ++ +C    L +  +TG     LYRGEN++  +++   PDL+ P TY   ++A+ +F  +E  ++   V   PS GH+AT++   AA WG P SVWP+G +  + W           P  R +       C + ++ +++ L +A+K   E++  T   G      ++ IP   +R L
Sbjct:    4 GSRRAFFTVGAASSLVWTQ---EAMTTQTISLQKAITIVEKHCPHDFLSSVVKTG---RCLYRGENMDSSTIVSARPDLLQPETY-GNEDALAYFQCIEDQLRGASVGALPSTGHIATTEKSEAARWGVPASVWPLGGDFQFVW-----------PRSRRLIFPGADRCPDNDLVLNQDLSVALKYPREILFATNATGQIEASSYLAIPGELDRYL 201          
BLAST of NO16G01280 vs. NCBI_GenBank
Match: XP_005838804.1 (hypothetical protein GUITHDRAFT_150822 [Guillardia theta CCMP2712] >EKX51824.1 hypothetical protein GUITHDRAFT_150822 [Guillardia theta CCMP2712])

HSP 1 Score: 89.7 bits (221), Expect = 1.600e-14
Identity = 56/165 (33.94%), Postives = 84/165 (50.91%), Query Frame = 0
Query:  117 IKLNCQGILKAYRETGPIPSFLYRGENVNRPSVMKCMPDLMDPSTYVEGQEAVEFFGKVETAMKDLP-----VKPSVGHLATSDMRRAAAWGTPVSVWPIGKEIHYAWLNDAQNFWPVPPEKRGITVKDISACINREIQVDKGLDMAVKMGHEVMLQTGDHGFVV 277
            I   C+ +++A R +G     LYRG +      +K   DL+DP+TY  G++   FF  +E  +K+ P     V+PS GH+ ++D + AA WG   S WP G    Y WL  +  F+P P    G           R + VD+GLD A++ G E+M    DH ++V
Sbjct:   76 IAKECRPMIEAVRRSG--GHLLYRGYDEATCKRVKEEADLLDPATY--GEDGARFFLAMEQWLKERPSFTRSVRPSCGHIGSADHKVAARWGIAHSCWPAG-SFSYGWLRGSDIFYP-PSVDVGEENAGHRDFFERNMVVDEGLDFALRHGKEIMF-ASDHYWIV 233          
BLAST of NO16G01280 vs. NCBI_GenBank
Match: CBN78376.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 84.7 bits (208), Expect = 5.100e-13
Identity = 57/199 (28.64%), Postives = 89/199 (44.72%), Query Frame = 0
Query:  138 LYRGENVN--------RPSVMKCMPDLMDPSTYVEGQEAVEFFGKVETAM-KDL--PVKPSVGHLATSDMRRAAAWGTPVSVWPIGKEIHYAWLNDAQNFWPVPPEKRGITVKDISACINRE-----------------IQVDKGLDMAVKMGHEVMLQTGDHG--------------FVVIPVAYERELRARLNLGYE 295
            LYRGE ++         P  +   PDL+D  TY     A E+F   +  M KD   P +PS  H+  S+   AAAWGT  S+WP+G  + Y+WL+     W    E+ G      +   NRE                 ++++ GL  A++  HEV++++G+                FV IP + +R +R+ L +  E
Sbjct:   32 LYRGEALSLGGGGKGGGPRAVTEKPDLLDAETY-GSAVAAEYFRAADAIMDKDFQAPARPSNAHIMVSNKEAAAAWGTACSIWPLGDSLDYSWLHSCAELWDPRWERPGSRSSPPNG--NREAFFWRDEDGMRRFLAEGLRINSGLSEAIRGRHEVLVRSGEFSFGSEARKGAVIQDTFVCIPASEDRAVRSALGIPAE 227          
BLAST of NO16G01280 vs. NCBI_GenBank
Match: OSX80079.1 (hypothetical protein BU14_0060s0044 [Porphyra umbilicalis])

HSP 1 Score: 68.2 bits (165), Expect = 5.000e-8
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 0
Query:  154 PDLMDPSTYVEGQEAVEFFGKVETAM--KDLPVKPSVGHLATSDMRRAAAWGTPVSVWPIGKEIHYAW 220
            PDL+D +TY  G     FFG+++ A+      V PSVGH+ T D   AAAWGTPV+VWP+G  + Y W
Sbjct:  172 PDLLDEATY--GAAGAAFFGRLDRALTAAGARVTPSVGHILTGDAAAAAAWGTPVTVWPVG-PVGYVW 236          
The following BLAST results are available for this feature:
BLAST of NO16G01280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM24026.14.300e-8465.00hypothetical protein Naga_100040g46 [Nannochlorops... [more]
XP_002182852.13.800e-1627.31predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_005838804.11.600e-1433.94hypothetical protein GUITHDRAFT_150822 [Guillardia... [more]
CBN78376.15.100e-1328.64conserved unknown protein [Ectocarpus siliculosus][more]
OSX80079.15.000e-848.53hypothetical protein BU14_0060s0044 [Porphyra umbi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003117NSK003117Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01280.1NO16G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671686gene_6010Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100040g46gene6472Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01280.1NO16G01280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01280 ID=NO16G01280|Name=NO16G01280|organism=Nannochloropsis oceanica|type=gene|length=1821bp
GGTGGTGGCAATAGAAACACGACGAAAAGGCTGCAACAAGGCTGGTCTAT
CCCGGCACGTTGTGGGTGATAAAAAAGAGCTTGTGTGTCAGTACTGCTAG
CTAAGCAATATCAAGGGGCTCAGTATTTGAAGCAGTGTAGACCCCCCGGC
AAGGGAGCCAGGAGATGGACGACCCGTCGGAGTCGCGTCTGTGACGAATC
ATCGCCTCGCTCCGGCCTTGCTTCAACACTCCAACACATGCTTCCAGACT
GTTGAGACGTATACCAACCCACGCACTGCCGCCACTACAGCAACACACGC
AGGCCTAGACCCAAGCACATAGCACCATGGCTCCCTACCCCTTGTGCTTC
GTCCCGCAGGCCTCCTCAATTAATTTCCCGCCCACATCCGAGCGAGTGAC
TGGCCTATTCGCTTCCGCTACACCAGACGAGCACGAGCGGGTCCAGAAGC
CGCAGCAGCAGCCCCAGCACCACCACCGTCGTGAACTTCTTCATAAGGCC
TTTGTGCTCGGGGGCCTACTCCTCGGGGGCACCGCGGTGCCTACTCCACT
CGTTCAGCCGGGAGATGGAAGGTTGAATTTCGTGCCGGCTGCTGCGGGCG
CGGCAGTCTTGAATGACACTCCCCTCCCAGCTGTCGAAGTCGAGGCTATG
TCCACCGGTAGGGCCGCTGATTTTATTAAGCTGAATTGTCAAGGGATTTT
GAAGGCGTATAGGGAGACAGGTCCCATTCCCTCTTTCCTGTATCGGGGTG
AGAATGTGAACAGGCCTTCAGTGATGAAGTGCATGCCGGACCTGATGGAC
CCTTCGACGTATGTAGAAGGCCAAGAAGCGGTCGAGTTCTTCGGAAAAGT
GGAAACGGCAATGAAGGATTTACCGGTCAAgtaagttgtgtggtgtgtgg
gcgggctgggtgcgctcgcgtatatgtgtaagaatgtatgtatgtgagag
agaggggaaggagacatcacagggaagggggtaaaggggcatgctgtgct
ccatcgaagccgttctaacctgtcgcatttcctgcatcttgttgttgcct
cccctcctctactcctcaaacatagACCTAGCGTCGGCCACCTAGCCACC
AGTGACATGCGCAGGGCGGCTGCCTGGGGTACCCCTGTATCAGTCTGGCC
CATCGgtgagtatcacaaaataaaaataaatttataaacctatccgacaa
cgtaaaaatctttttaacatcccaggaaagactcttcatgctcgtttctg
actcctcctttccctgctctcgtttgttcctccctttcctcctttccctc
cctgccagGCAAAGAGATTCACTATGCGTGGCTAAATGACGCCCAAAACT
TCTGGCCTGTACCTCCTGAAAAACGCGGCATCACTGTCAAGGATATTAGC
GCGTGTATAAACAGAGAAATTCAGGTGGATAAGGGCTTGGACATGGCAGT
TAAGATGGGCCACGAGGTGATGCTCCAAACGGGGGATCACGGTTTCGTGG
TCATCCCTGTTGCCTATGAGAGGGAGTTAAGGGCGAGATTGAATTTGGGC
TATGAGTAGAGATGAAGGACGGGAGGGGTGGAGGGAGACAAGGAAAGGGA
AGGAAAGGGGTGTGTATATAGCGGGGAAGGGGAGGATGCGGGGGGCCGAG
CGTGTGTGTGTTGTCTGATAATGCTGCCTTTCAGTAGCAGCAGCATCACC
AGTAGCGAAAGCAACACCACCAAAACGAGATTAAACCAGCCATCAGAAAG
AGGGAAGAGGAAAGAAATGCGAGGTAGAAAAGAAGGAAAGCAGAAGTCAG
GGAGAGAAAAGAAAGGACTGG
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protein sequence of NO16G01280.1

>NO16G01280.1-protein ID=NO16G01280.1-protein|Name=NO16G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MAPYPLCFVPQASSINFPPTSERVTGLFASATPDEHERVQKPQQQPQHHH
RRELLHKAFVLGGLLLGGTAVPTPLVQPGDGRLNFVPAAAGAAVLNDTPL
PAVEVEAMSTGRAADFIKLNCQGILKAYRETGPIPSFLYRGENVNRPSVM
KCMPDLMDPSTYVEGQEAVEFFGKVETAMKDLPVKPSVGHLATSDMRRAA
AWGTPVSVWPIGKEIHYAWLNDAQNFWPVPPEKRGITVKDISACINREIQ
VDKGLDMAVKMGHEVMLQTGDHGFVVIPVAYERELRARLNLGYE*
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Synonyms
Publications