NO16G01180, NO16G01180 (gene) Nannochloropsis oceanica

Overview
NameNO16G01180
Unique NameNO16G01180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3431
Alignment locationchr16:367730..371160 +

Link to JBrowse

Properties
Property NameValue
DescriptionCentromere protein j
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:367730..371160 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009852Tcp10_C_dom
Homology
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BLAST of NO16G01180 vs. NCBI_GenBank
Match: XP_005855247.1 (t-complex 10a-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU21113.1 t-complex 10a-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 93.2 bits (230), Expect = 4.700e-15
Identity = 68/91 (74.73%), Postives = 77/91 (84.62%), Query Frame = 0 
Query:  851 KVISQMPDGRQEWRYTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYWYAANQTRHTTVKRTGLEVFEFPTGQVERHYPNGVREIEPP 942
            K I ++PDGR+EW Y+N      XXXXXXXXXXXXXXXXXXXXXXXXX  WYAANQT+H TV  +GLE+FEFP+GQVERHYPNGVREI+PP
Sbjct:  147 KTIRKLPDGREEWHYSNGTVKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXWYAANQTKHITVAASGLEIFEFPSGQVERHYPNGVREIQPP 237
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BLAST of NO16G01180 vs. NCBI_GenBank
Match: EWM24020.1 (centromere protein j [Nannochloropsis gaditana])

HSP 1 Score: 89.7 bits (221), Expect = 5.200e-14
Identity = 278/970 (28.66%), Postives = 345/970 (35.57%), Query Frame = 0 
Query:    5 EDPFSASRGLVRTPPRKDGSNKYSSRSFSHDTANPVHHTSMSGRVGKGCLLTPASTERTPRSFLRKGSRQEPSAIHRLKSGASPSGSSS---------VTRNPRPGHAATPRSTSTSTNQGSNRKTISSYSSPSSATRDEVRSSLMPSPAGICRKDTVAMPKRXXXXXXXXXXXXXXXXXXXXXXXYHKESDFMIKSHEQYSEEGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLHFSSFSYYEGPQSL-----RTRLFGQVSEDEEEGEGEGWRCEGEKGEMFEYDASLLSAVSDVEGWEARHRKEVIEFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQLGKIGPFQPXXXXXXXXXXXXXXGTHRGSLLLKTLESKQEELEREVA---------RARKDSAAAERIRHQVLEKQRQVEVWATAEREAVRKWCEEQKXXXXXXXXXXXXXXXXXXXELQEVIPSREKVKEDRMEKQDLLATIEKLKLDGEGQRKKWVAERRRQAAVIQQLQSRVTELQGYVVAATAGTGSGTPGKXXXXXXXXXXXXXXXXXXXXXXSLLSPAADSPASF---GSSGSGGFKRKRAPTTPSVQP-SFPXXXXXXXXXXXXXXXXQAI------YFTAPVGGEERNEEGVFGKSDSHDESYPPLLSTYNPSKYDVAPPSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISRVGKSAGREGGKVISQMPDGRQEWRYTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYWYAANQTRHTTVKRTGLEVFEFPTGQVERHYPNGVREIEPP 942
            EDP S SRGL  TPPR   + + +  + S    N      M+ ++  G   +P  ++ TPRSFLRKGSR+EPSA+HRLKSG SPS SSS           R  +P    + RS     +Q   R T    ++ +    D  + + M  P          +P R                         +E +   KS  Q   E R                                          S+    E P  +     R RLF   SE EE+ EG GW  EG +    E  AS L + S++  W+ARHR+E+ EFE                                              XXXXXXXXXXXXXXXXXXXXXXXXX                                                    G +G   P              G+ RGSLLLK LE+KQEE+ERE+A                                                   XXX                E+Q  +P+R    E+R+E++ LLATIEK+KLD EGQRK+W A                         A  GT S  PG                       S +S AA  P +     SS S G +  R       +P S P                 ++      + +    G+   EEG     +     YP     Y   +Y V PPS                                                                              XXXXXXXXXXXXX              K I ++PDGR+EW Y+N      XXXXXXXXXXXXXXXXXXXXXXXXX  WYAANQT+H TV  +GLE+FEFP+GQVERHYPNGVREI+PP
Sbjct:    7 EDPLSPSRGLAHTPPRNKRTPRCAMGNESQPGDNTTPMLGMTAQMKNGQHESP--SQSTPRSFLRKGSRREPSAMHRLKSGISPSPSSSSKPIPXXXXXXRKSKPARKRSERSPLALVSQARTRGT----TTEAVRATDSKQGTAMEEP----------LPGRSSYPVPSPTEGYLGEGGGVGEETSWRE-ERESKSTSQEKVEVREHSFDGNATKSFDPYWPP------------------------SAAGTAEAPDVMDGREWRMRLFHADSE-EEDREGGGWDQEGGR---CEDQASFLCSGSEMAAWQARHREEMTEFESLERALAGFPAISLQDGPEPWAANGVQGMGWTAAVDQEGRPAIVGEXXXXXXXXXXXXXXXXXXXXXXXXXMEPGHVGENLTADRGREDGKQRGKFQENRTKSHSNERFCE------------GNVGLPPPHPSFPSSLDTCLSCGSRRGSLLLKALENKQEEIERELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKKAFLREQAAATRCLEVQRALPTR----EERVEREALLATIEKMKLDAEGQRKRWAANXXXXXXXXXXXXXXXXXXXXXXXXAKTGTAS--PG-----------LRSGIGPRGQNASSMS-AARQPRNLPLPASSLSTGLRESRPCARVGARPLSHPTSASPLRLEKKALGAGHSMGVPPCSFLSRQGDGKAGAEEGTNAVQEGSSPGYPTSPRPYGVREYTVTPPS---------------SAQSIIGCTSDLSWGGARTSPSAAIISERPPPFAPPYHYLHQGQELFRRPLPVAKQDSQPASGXXXXXXXXXXXXXXXXXXXXXXXXXXXKTIRKLPDGREEWHYSNGTVKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXWYAANQTKHITVAASGLEIFEFPSGQVERHYPNGVREIQPP 886
The following BLAST results are available for this feature:
BLAST of NO16G01180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855247.14.700e-1574.73t-complex 10a-like protein, partial [Nannochlorops... [more]
EWM24020.15.200e-1428.66centromere protein j [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003105NSK003105Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01180.1NO16G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529833gene_6000Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100040g34gene6461Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01180.1NO16G01180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01180 ID=NO16G01180|Name=NO16G01180|organism=Nannochloropsis oceanica|type=gene|length=3431bp
CAACAGCAGGTAGAAGACGATCAGGGGGACTTTGCCGCCTGTCTAGGGGC
AGTCTACTGTCAGCGTGACCTTCTCTGACCGACCTCACTTTCTCGGCACA
CACGGCCTTCATTCCAGCATCGCTCCCGTCATGTCCAGCGGCGAGGACCC
CTTCAGCGCATCACGGGGCCTAGTCCGCACCCCTCCCCGCAAAGACGGTA
GCAACAAATATAGCAGCCGCAGCTTCAGCCATGACACGGCAAACCCGGTG
CACCACACAAGTATGAGCGGTAGGGTGGGCAAGGGCTGCCTGCTTACACC
TGCTTCTACCGAACGCACCCCGCGGTCTTTTCTACGCAAAGGCTCACGGC
AAGAGCCCTCGGCCATACATCGGCTTAAATCGGGGGCTTCCCCGTCTGGC
TCATCGTCGGTCACCAGGAATCCGAGGCCGGGTCACGCTGCTACTCCTAG
GAGCACCAGCACGAGTACCAACCAAGGGTCAAACCGGAAGACCATTTCTT
CTTACTCTTCTCCCTCTTCTGCCACTCGTGATGAGGTACGATCATCGCTA
ATGCCTTCCCCTGCTGGCATTTGTAGGAAAGACACAGTAGCGATGCCCAA
AAGGAGCACTTCCACATCACCAGCACCAGCACCAGCACCAGCACCAGCCC
CTCTCCCTCAGGACCAAGACGACTACCACAAAGAGAGTGATTTCATGATT
AAAAGTCACGAACAATATTCGGAAGAAGGAAGGGAAGATGAGGACAAACA
AGACACGTACACGACCAACAGCAGCAACAACAAAGACTTCGATTATTACT
GGCCTCCTGTTGCTGCTGCTGCTGTTACTGCTGCTGGATCCGCCGCTAAC
CTGCACTTTTCCTCCTTTTCTTATTATGAAGGGCCGCAATCCCTTCGAAC
TCGACTGTTTGGTCAAGTCTCCGAGGACGAGGAAGAAGGGGAGGGGGAGG
GGTGGAGGTGTGAAGGGGAGAAGGGAGAAATGTTTGAATATGATGCCTCC
TTGTTAAGTGCCGTGAGTGATGTGGAGGGTTGGGAAGCCCGGCATAGGAA
GGAGGTGATAGAGTTTGAGACACTTGAAAAGGCTCTTGAAGGGCTTCCGG
GCATAGGAGGGGGAGGAGGGGGGGAGGGGGGGAAAAAAGGAAGGAAGATG
GAGAATAGGGAGGATTTTGAAACCTTCGAGAATTCTTTGGCGGACTTCGC
GCAATTATCTTTGAATGATGTAAATGTCTCAGGGCATGAAGGAAGAAGGA
AAGAAGGACGGAAGCAAGAAGGTAAAGAGAAGGGGGAACGGGATGATGAC
GACGAGGACGAGGAGGAGGAAGAAAATGAAGGTGACTCCCACAAGCAATT
CCGTCAGCAGCCACCGCAATGCACCGAAAGCTCCTCCTCCTCCTCCTCCT
CGTCCTTTCCCACTTCCTACTACCATCACTCGCAACTCGGCAAGATTGGC
CCCTTCCAGCCTCCCTCCCTCCCCCCTTCCCTCCCACCCTCCTGCCCTAG
TTGCGGCACTCATCGAGGATCCCTCCTTCTCAAAACGTTGGAGAGCAAAC
AAGAAGAGCTCGAACGGGAGGTAGCACGCGCAAGGAAAGATTCAGCTGCG
GCCGAGAGAATCCGACATCAAGTGCTAGAAAAACAAAGGCAAGTCGAAGT
GTGGGCGACCGCCGAAAGAGAAGCAGTGCGAAAATGGTGCGAAGAGCAGA
AACTGTTGCTGGGGAAGGAGAAGAGGCGATTCTTACGGCAGCAACAGCAG
CAGCAGGCTGAGTTGCAAGAGGTGATTCCGTCAAGGGAGAAAGTGAAAGA
GGATAGGATGGAGAAGCAGGATTTGTTGGCAACGATTGAGAAATTGAAGT
TGGACGGGGAAGGGCAAAGGAAGAAATGGGTGGCGGAGAGGAGGAGACAG
GCTGCGGTGATCCAGCAGTTGCAGTCGAGGGTGACAGAGCTACAGGGTTA
TGTGGTGGCGGCTACAGCAGGCACAGGATCCGGAACGCCTGGAAAGAAAA
CCAAGGGCTCTGCGAGTAGGAGCAAGCCTTCTGTTTATCCTTCCTCCCTC
CATCCCTCCCACTCCCTCCTCTCACCGGCTGCTGACTCGCCCGCCTCCTT
CGGTTCTTCCGGCAGTGGGGGGTTTAAGCGCAAACGTGCACCTACCACAC
CCTCTGTACAGCCCTCATTTCCTTCCTCAGGCGCCGCCGTCGCTGCTGCT
ACTGCAGCAGCAGCTGGAGAACAGGCAATCTATTTTACAGCCCCTGTCGG
AGGGGAGGAAAGAAATGAGGAAGGTGTGTTTGGAAAAAGTGACTCTCACG
ATGAATCCTATCCCCCTCTCTTGTCTACCTACAACCCAAGCAAATACGAC
GTGGCGCCCCCCTCCCGCCACCTTCCTCCTCCTTCTCCTTCCTCTCTTGC
TTCTCGTCGTCCAGCGGCAGCAGCAGCAGCATCGGCCGCAGCAATCGAAC
GCCCTCCACCTTTTGCCCCTTCCTATCTGCAAGAGCAGCAGCAGCAGCAG
CAGCGGCACTTCCAACAGCAGCACACGCCCCTGTCTACAGCCAAACACCA
ACACCAACATTCTACAGTAACTCCTCCTAACACCTCCACCCCCTCCTCCT
CCGTTGTCAATACGAGGACAATGACCACGACGCCTACCACCATCTCCAGA
GTTGGAAAATCAGCAGGGAGGGAGGGAGGAAAAGTAATTTCTCAAATGCC
CGACGGCCGGCAAGAATGGCGGTACACCAATGGGACGGTCAAGGAAGTTT
TTCCTTCGGGGAAGAGCATCGTAAGGTTTACGAATGGTGATGTCAAGACG
ACGGAGCCAGTGACGGGGGATGTGGTATATTGGTATGCTGCCAATCAAAC
GAGGCACACGACTGTCAAGAGGACAGGTTTGGAAGTGTTTGAGTTCCCCA
CGGGCCAGGTGGAAAGGCATTACCCGAATGGGGTGCGTGAGATAGAGCCA
CCCGCTGGGACTGTGGGTAGGGCGCCAAGCATCTTCAGAAAAGTGGTAGC
TTCGTGAGGCGCAGGAGGAGGAGCTAAAAGAGGAAACGGCAGGGGTAGAG
ATCGAGAAGAGGAGGAGGAGGACGACGACGAGGGGGAGGACGAGGAAGGG
AAACAAAAAGTGTGCGAAAGTTGTGACTGTATTGTAGCCAATTTCTGCGA
TCCTCTGGTGTAAACACACTTTATATTCAGAATGGAATAATTTAAATAAA
AAAAAACAAAAAAATAAAAAGAAAGCACAAAGCAAAAAGGGAGCTCCCAC
GAAAGGCGCCCGCGAGCGTAACAGGAAAGGAAAGTAATAAAAAAAATAGT
AAGTTATGTTCAAACAATTGATATGCGTACCGGGACGTTGCTTTTGCTTT
CTTGACTTGGTCAATCATGAGAGAATTGGCAATCGTCGTAGGGAGACGCG
TTACGATTCAGTGAGTGGCGTCATGGTGACG
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protein sequence of NO16G01180.1

>NO16G01180.1-protein ID=NO16G01180.1-protein|Name=NO16G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=959bp
MSSGEDPFSASRGLVRTPPRKDGSNKYSSRSFSHDTANPVHHTSMSGRVG
KGCLLTPASTERTPRSFLRKGSRQEPSAIHRLKSGASPSGSSSVTRNPRP
GHAATPRSTSTSTNQGSNRKTISSYSSPSSATRDEVRSSLMPSPAGICRK
DTVAMPKRSTSTSPAPAPAPAPAPLPQDQDDYHKESDFMIKSHEQYSEEG
REDEDKQDTYTTNSSNNKDFDYYWPPVAAAAVTAAGSAANLHFSSFSYYE
GPQSLRTRLFGQVSEDEEEGEGEGWRCEGEKGEMFEYDASLLSAVSDVEG
WEARHRKEVIEFETLEKALEGLPGIGGGGGGEGGKKGRKMENREDFETFE
NSLADFAQLSLNDVNVSGHEGRRKEGRKQEGKEKGERDDDDEDEEEEENE
GDSHKQFRQQPPQCTESSSSSSSSSFPTSYYHHSQLGKIGPFQPPSLPPS
LPPSCPSCGTHRGSLLLKTLESKQEELEREVARARKDSAAAERIRHQVLE
KQRQVEVWATAEREAVRKWCEEQKLLLGKEKRRFLRQQQQQQAELQEVIP
SREKVKEDRMEKQDLLATIEKLKLDGEGQRKKWVAERRRQAAVIQQLQSR
VTELQGYVVAATAGTGSGTPGKKTKGSASRSKPSVYPSSLHPSHSLLSPA
ADSPASFGSSGSGGFKRKRAPTTPSVQPSFPSSGAAVAAATAAAAGEQAI
YFTAPVGGEERNEEGVFGKSDSHDESYPPLLSTYNPSKYDVAPPSRHLPP
PSPSSLASRRPAAAAAASAAAIERPPPFAPSYLQEQQQQQQRHFQQQHTP
LSTAKHQHQHSTVTPPNTSTPSSSVVNTRTMTTTPTTISRVGKSAGREGG
KVISQMPDGRQEWRYTNGTVKEVFPSGKSIVRFTNGDVKTTEPVTGDVVY
WYAANQTRHTTVKRTGLEVFEFPTGQVERHYPNGVREIEPPAGTVGRAPS
IFRKVVAS*
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Synonyms
Publications