NO16G01150, NO16G01150 (gene) Nannochloropsis oceanica

Overview
NameNO16G01150
Unique NameNO16G01150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1758
Alignment locationchr16:358915..360672 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:358915..360672 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G01150 vs. NCBI_GenBank
Match: EWM24011.1 (hypothetical protein Naga_100040g31 [Nannochloropsis gaditana])

HSP 1 Score: 207.2 bits (526), Expect = 2.800e-50
Identity = 102/118 (86.44%), Postives = 113/118 (95.76%), Query Frame = 0 
Query:    1 MKVFFSLAILLVCMQAALGFMPTGPLRTRQAIKMSATNNKMTEVVKTGKSALAGLTPLILASPVFATEGTGEVLGVDDPRILPIIASIGAAFAFLFSSWSNKQDNEEFFNGYQDSERK 119
            MKVFFSLA+L+VCMQA +GFMPT PLRTRQ +KMSAT+NK+TEVVK GK+ALAGLTPLIL+SPVFATEGTGE LGVDDPRILP++ASIGAAFAFLFSSWSNKQDNEEFFNGYQD+ERK
Sbjct:   11 MKVFFSLAVLIVCMQAVMGFMPTAPLRTRQVMKMSATDNKVTEVVKAGKTALAGLTPLILSSPVFATEGTGEALGVDDPRILPLVASIGAAFAFLFSSWSNKQDNEEFFNGYQDTERK 128
The following BLAST results are available for this feature:
BLAST of NO16G01150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24011.12.800e-5086.44hypothetical protein Naga_100040g31 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003100NSK003100Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01150.1NO16G01150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100040g31gene6458Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01150.1NO16G01150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01150 ID=NO16G01150|Name=NO16G01150|organism=Nannochloropsis oceanica|type=gene|length=1758bp
CTCTCATTCTCCTTCCCTCCCTCGGACCGATGCATTGAACTCGCAGATAT
CTCGCCAGACATTGCTACACCAGGCAAGCCCATCCCTTCCTGTCTTGTGT
TTGATACACACACCACAAACCTCACTCCTGAAATCCAAAACGCTGTCTTT
CTAGCCACGACTGTGTGGGCGTACAAGAGGGCGCTTTGATTGGCCTTCTC
ACTAGGCATGCGACCAAATCTGTAACCCTGCCCTAGGCTACTGCAACCCC
TTCTTGCTTCACGTGCACCCAAAGCCTCAAAAGAGCCAGCGAGGGCCAGT
GCATGGATAGCTATGCATTCGTAACTTATTTAAATAGGACTATGTGACCA
GGGCCTCAGCGCTGTCTTTAATCTGCCCGCGACAGATTATTCGAATTGAA
GAACTCACCCTTCCCCCTGCCCCTTCCCTTCCTTTCCTGTTCCTTCCCTC
GCATGACACAGTCCACCCACCACCCCACTCCCAGTCAAGATGAAGGTCTT
CTTCTCCCTCGCTATCCTCTTGGTGTGCATGCAGGCCGCCCTGGGCTTCA
TGCCCACTGGCCCCCTCCGTACTCGCCAGGCGATCAAGATGTCTGCCACA
AACAACAAGATGACCGAGGTGGTCAAGACCGGAAAGTCCGCCCTGGCGGG
CCTCACGCCCCTCATCCTTGCCTCCCCCGTCTTTGCCACCGAGGGCACTG
GCGAGgtatgtgtcctttttgaaggggggggaaagagggggataccgaca
ctgccgcgactattcgatgctctgttgccctcagcaggcattagatgctt
attcgcttctgcccccgttcccttcttccccctcccaatcacaagGTGCT
TGGCGTGGATGATCCTCGTATCCTGCCTATCATCGCTTCCATCGGCGCCG
CCTTTGCCTTCCTCTTCTCGAGCTGGTCCAACAAGCAGGACAACGAGGAG
TTCTTCAACGGGTACCAGGACTCGGAGCGCAAGgtatgttcgggatagaa
aattgaacatgggaggcggataggaggggtgggggattgaaaagatacgg
ggaattgctggtttcaagggaacgagtgggaaatgcgcagtgtgggcgca
tcgaccgcccacacctctcactcacttattcctgtcccccctccctccct
ccttccctccctccctccctcatgacagTAAATGGTCCGTTAGCAGGCTA
TTTCGACATCACCGCCACCACCACAATCCAATCACGCAACCAGGGGAGAT
GATACAAAAAAAGAGGAAACAAAAAAGAAAGCAGGCCGTGTGATGAGAGT
CGAGGCAAGTCTTGAGACAGAGTGTCTGATTTCGCTTGCTATGATACGGG
CCAGTTTCTCCCCCCCACGCCAGCAAGAAGAAATGACGGGGACAGAGGAG
GGAAGGGAGAAAGAGGATTGGTTTTATTTTTAATTTCTCGTCTTGTTGTC
TCGATCGGTCTCGTCTGTGGGTGCTGGTTGGAGCTGTAGTGGTCGTGCCA
GGGCGAGGAAGGGCTGTCGTAATGAGGTATCCGAAGGGCTCTGATATAGA
AAGAGAACACCAACACCGCAACAACAGCAATGCTCCCATTTTGTCTTTCC
TCTCTCGCTATGCTTTCCGTTTGTGTGTATGTGAGTGTTGTGTGCACTTC
ACACTTGGTGTTATGTTTTGTGCCCTTATTTTAATGGTACGGTCAAATTC
TCGGTTTTAAACGAACGATGGTGAATGTAGGATACGTCCGCTCTGCTTGG
CATGAACA
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protein sequence of NO16G01150.1

>NO16G01150.1-protein ID=NO16G01150.1-protein|Name=NO16G01150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MKVFFSLAILLVCMQAALGFMPTGPLRTRQAIKMSATNNKMTEVVKTGKS
ALAGLTPLILASPVFATEGTGEVLGVDDPRILPIIASIGAAFAFLFSSWS
NKQDNEEFFNGYQDSERK*
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Synonyms
Publications