NO16G01140, NO16G01140 (gene) Nannochloropsis oceanica

Overview
NameNO16G01140
Unique NameNO16G01140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3641
Alignment locationchr16:355274..358914 +

Link to JBrowse

Properties
Property NameValue
DescriptionLin1 family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:355274..358914 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR035445GYF-like_dom_sf
IPR003169GYF
Vocabulary: Cellular Component
TermDefinition
GO:0005682U5 snRNP
Homology
[Close]
BLAST of NO16G01140 vs. NCBI_GenBank
Match: EWM24035.1 (lin1 family protein [Nannochloropsis gaditana])

HSP 1 Score: 299.3 bits (765), Expect = 2.100e-77
Identity = 207/423 (48.94%), Postives = 236/423 (55.79%), Query Frame = 0 
Query:   48 NGSGGTCVRTTEFEDEFDTVRSTRQIKGDEGDEYVAGAATGR-DLEGXXXXXXXXXVRRMTKQFAWEEERMEEDFNEAGDKMEPFNLKTERTEGYFDETGHFVWKKEEGGEDPWLASLENEEDLEARIGEAAXXXXXXXXXXXXXXXXXXXXXXXXXQDKLLRLMRPGETVLRALKRLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFDLVTELADSLLRAGVVDVYDKQYEVMKTHLMEDXXXXXXXXXXXXXXXXXXXXXXERKKRPASGISFAVAERGGGEGAMWEYKGPDGLVHGPYSTQEIGKWRSQGFFTGGTAVEMRRVG-GKGERXXXXXXXXXXXXXXXXKKVTFSAESLAADFGEDEEEVVEGMDDGGEGKGXRKKGEDEEGEWVNSDAIDWAEET 469
            + + G+ VR  EFEDEFD V++ RQIKG+E D+Y AGA  G+     XXXXXXXXX   MTKQFAWEEERMEE+FNEAGDKMEPFNLK ERTEG+FDETG+FVWKKEEGGED WLASLENEEDLEARIGEAA                         +++LL  +RPGETVL ALKRLG                                             F+ VTELAD LLRAG V+VYD  YE M+  L                           +KRPA G+S     R GGE  +WEYKGPDGLVHGPYS++ I  WR+QGFFTG TAVEMRRVG G G                  KKVTFS  +LAADF +DEE       + G            EGEWV SDAIDW+ +T
Sbjct:   39 SNNNGSDVR--EFEDEFDMVQARRQIKGEEEDDYDAGATGGQXXXXXXXXXXXXXXXXXMTKQFAWEEERMEEEFNEAGDKMEPFNLKNERTEGFFDETGNFVWKKEEGGEDAWLASLENEEDLEARIGEAAVARKKKDDEDAEGEEPPEFVDQWALKERLLTFLRPGETVL-ALKRLG------------PREGRKEGGGVEAGGKAMVQKRVDVRTPEEKEAFEQVTELADQLLRAGAVEVYDVAYEAMRAGL-----------------EGGDEGRRGGRKRPAVGMS-----RDGGE-VLWEYKGPDGLVHGPYSSETIRAWRAQGFFTGPTAVEMRRVGSGTG--------ATKQVGEPSRKKVTFSVATLAADFEDDEEXXXXXXREAGA----------REGEWVGSDAIDWSAQT 405
[Close]
BLAST of NO16G01140 vs. NCBI_GenBank
Match: CCA20426.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 88.6 bits (218), Expect = 5.700e-14
Identity = 75/263 (28.52%), Postives = 107/263 (40.68%), Query Frame = 0 
Query:  131 FNLKTERTEGYFDETGHFVWKKEEGG--EDPWLASLENEEDLEARIGEAAXXXXXXXXXXXXXXXXXXXXXXXXXQDKLLRLMRPGETVLRALKRLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFDLVTELADSLLRAGVVDVYDK-QYEVMKTHLMEDXXXXXXXXXXXXXXXXXXXXXXERKKRPASGISFAVAERGGGEGAMWEYKG-PDGLVHGPYSTQEIGKWRSQGFFTGGTAVEMRRV 390
            F++K E+ +G FD+ GHFVW KEE    ED W+     E+       E+A                         ++ L +L+ PGE VL AL+RLG                                            +FDL+TE A  L+  G VD Y + Q E ++T ++ +                        K+R     S A  E    E  MWEYKG  +G++HGPY+T  I +W+ QG+FTG  +V+MR V
Sbjct:   52 FDMKDEKDDGKFDKNGHFVWNKEENNIQEDAWMEGYTEEQ------MESARKAHLRRDIREESEESEGLLSVQKAKELLGQLLEPGENVLNALRRLG------------INRPKRSSGRKRQRLKDDMKKEPLPQTQEEKRRFDLITEAAALLMAHGHVDTYSQLQEEFIQTTVLIETL---------------------TKERSQVQASIATIEEPSLE-TMWEYKGLGNGVIHGPYATSTILQWKQQGYFTGEKSVDMRIV 274
[Close]
BLAST of NO16G01140 vs. NCBI_GenBank
Match: GAX94758.1 (Hypothetical protein PINS_002634 [Pythium insidiosum])

HSP 1 Score: 83.6 bits (205), Expect = 1.800e-12
Identity = 90/265 (33.96%), Postives = 117/265 (44.15%), Query Frame = 0 
Query:  131 FNLKTERTEGYFDETGHFVWKKEEGG--EDPWLASLENE----EDLEARIGEAAXXXXXXXXXXXXXXXXXXXXXXXXXQDKLLRLMRPGETVLRALKRLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFDLVTELADSLLRAGVVDVYDKQYEVMKTHLMEDXXXXXXXXXXXXXXXXXXXXXXERKKRPASGISFAVAERGGGEGAMWEYKGPDGLVHGPYSTQEIGKWRSQGFFTGGTAVEMRRV 390
            FN+  E  EG+FDE GHF+WK+EE    E+ WL     E    ++ +    E A                            L  L++P ETVL+AL+RLG                                            QF+ +TE AD L+R G +DVY        + + E+ XXXXXXXXXXXXXXXXXXXXX                    +  MWEYKG DG +HGP+ST     W+ QG+F G +AV++RRV
Sbjct:   30 FNMDDENEEGHFDEDGHFIWKREEKAVQEEAWLXGDRKEFRDXQETDDLTEEEANRI-------------------------LATLLQPRETVLQALRRLG------------KKRSKPRAGNKRKHADNGHSTEAPAQTVEEKEQFERITEAADFLMRIGEIDVY--------SQMKEEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEVMWEYKGADGQIHGPFSTSAFIAWQQQGYFVGDSAVDIRRV 249
[Close]
BLAST of NO16G01140 vs. NCBI_GenBank
Match: XP_008896130.1 (hypothetical protein PPTG_04060 [Phytophthora parasitica INRA-310] >ETK76415.1 hypothetical protein L915_17170 [Phytophthora parasitica] >ETL83083.1 hypothetical protein L917_16892 [Phytophthora parasitica] >ETM36302.1 hypothetical protein L914_16973 [Phytophthora parasitica] >ETN18460.1 hypothetical protein PPTG_04060 [Phytophthora parasitica INRA-310] >ETP06016.1 hypothetical protein F441_17501 [Phytophthora parasitica CJ01A1] >KUF98176.1 CD2 antigen cytoplasmic tail-binding protein 2 [Phytophthora nicotianae])

HSP 1 Score: 82.8 bits (203), Expect = 3.100e-12
Identity = 83/340 (24.41%), Postives = 124/340 (36.47%), Query Frame = 0 
Query:  128 MEPFNLKTERTEGYFDETGHFVWKKE--EGGEDPWLASLENEEDLEARIGEAAXXXXXXXXXXXXXXXXXXXXXXXXXQDKLLRLMRPGETVLRALKRLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFDLVTELADSLLRAGVVDVYDKQYEVMKTHLMEDXXXXXXXXXXXXXXXXXXXXXXERKKRPASGISFAVAERGGGEGAMWEYKGPDGLVHGPYSTQEIGKWRSQGFFTGGTAVEMRRVGGKGERXXXXXXXXXXXXXXXXKKVTFSAESLAADFGEDEEEVVEGMDDGGEGKGXRKKGEDEEGEWVNSDAIDWA 466
            M  F+++ E+ EG+FD  G+FVW  E  +  E+ WL  +  ++   AR  ++                             L  L++P ETVL+ALKRLG                                            QF+ +TE AD L+R+G V+VY    ++ +  + E+                       R+ + A        E    +  MWEYK  DG +HGP+ T     W+ QG+F G TAV+MR+     E                 +KV+   E L      D E+     DD         K +  E  W  SD ID++
Sbjct:    9 MTAFDMEEEKDEGHFDADGNFVWDDEAKKVQEEAWLDDISEQQMGAARSAKS--------RREFRDEQAEETMTKEVANRTLATLLKPRETVLQALKRLG-------------SKKSARVRPGYKRKQAQKNETEPEQTAEEKKQFEQITEAADFLMRSGEVEVYS---QIKEEFIPEE-----------------ELLAQRRRVQFAEEKDSKSEENPPKQEVMWEYKATDGQIHGPFPTSSFVAWQQQGYFKGETAVDMRQAQSNDEAAAESNNESNKKQKLECEKVSAEQEMLNDFEDSDGEDDSPAADD---------KEKTNENPWKRSDTIDFS 298
[Close]
BLAST of NO16G01140 vs. NCBI_GenBank
Match: ETL29855.1 (hypothetical protein L916_17065 [Phytophthora parasitica] >ETO64914.1 hypothetical protein F444_17674 [Phytophthora parasitica P1976])

HSP 1 Score: 82.8 bits (203), Expect = 3.100e-12
Identity = 83/340 (24.41%), Postives = 124/340 (36.47%), Query Frame = 0 
Query:  128 MEPFNLKTERTEGYFDETGHFVWKKE--EGGEDPWLASLENEEDLEARIGEAAXXXXXXXXXXXXXXXXXXXXXXXXXQDKLLRLMRPGETVLRALKRLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFDLVTELADSLLRAGVVDVYDKQYEVMKTHLMEDXXXXXXXXXXXXXXXXXXXXXXERKKRPASGISFAVAERGGGEGAMWEYKGPDGLVHGPYSTQEIGKWRSQGFFTGGTAVEMRRVGGKGERXXXXXXXXXXXXXXXXKKVTFSAESLAADFGEDEEEVVEGMDDGGEGKGXRKKGEDEEGEWVNSDAIDWA 466
            M  F+++ E+ EG+FD  G+FVW  E  +  E+ WL  +  ++   AR  ++                             L  L++P ETVL+ALKRLG                                            QF+ +TE AD L+R+G V+VY    ++ +  + E+                       R+ + A        E    +  MWEYK  DG +HGP+ T     W+ QG+F G TAV+MR+     E                 +KV+   E L      D E+     DD         K +  E  W  SD ID++
Sbjct:    9 MTAFDMEEEKDEGHFDADGNFVWDDEAKKVQEEAWLDDISEQQMGAARSAKS--------RREFRDEQAEETMTKEVANRTLATLLKPRETVLQALKRLG-------------SKKSARVRPGYKCKQAQKNETEPEQTAEEKKQFEQITEAADFLMRSGEVEVYS---QIKEEFIPEE-----------------ELLAQRRRVQFAEEKDSKSEENPPKQEVMWEYKATDGQIHGPFPTSSFVAWQQQGYFKGETAVDMRQAQSNDEAAAESNNESNKKQKLECEKVSAEQEMLNDFEDSDGEDDSPAADD---------KEKTNENPWKRSDTIDFS 298
[Close]
BLAST of NO16G01140 vs. NCBI_GenBank
Match: ETP34125.1 (hypothetical protein F442_17489 [Phytophthora parasitica P10297])

HSP 1 Score: 82.8 bits (203), Expect = 3.100e-12
Identity = 83/340 (24.41%), Postives = 124/340 (36.47%), Query Frame = 0 
Query:  128 MEPFNLKTERTEGYFDETGHFVWKKE--EGGEDPWLASLENEEDLEARIGEAAXXXXXXXXXXXXXXXXXXXXXXXXXQDKLLRLMRPGETVLRALKRLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFDLVTELADSLLRAGVVDVYDKQYEVMKTHLMEDXXXXXXXXXXXXXXXXXXXXXXERKKRPASGISFAVAERGGGEGAMWEYKGPDGLVHGPYSTQEIGKWRSQGFFTGGTAVEMRRVGGKGERXXXXXXXXXXXXXXXXKKVTFSAESLAADFGEDEEEVVEGMDDGGEGKGXRKKGEDEEGEWVNSDAIDWA 466
            M  F+++ E+ EG+FD  G+FVW  E  +  E+ WL  +  ++   AR  ++                             L  L++P ETVL+ALKRLG                                            QF+ +TE AD L+R+G V+VY    ++ +  + E+                       R+ + A        E    +  MWEYK  DG +HGP+ T     W+ QG+F G TAV+MR+     E                 +KV+   E L      D E+     DD         K +  E  W  SD ID++
Sbjct:    9 MTAFDMEEEKDEGHFDADGNFVWDDEAKKVQEEAWLDDISEQQMGAARSAKS--------RREFRDEQAEETMTKEVANRTLATLLKPRETVLQALKRLG-------------SKKSARVRPGYKRKQAQKNETEPEQTAEEKKQFEQITEAADFLMRSGEVEVYS---QIKEEFIPEE-----------------ELLAQRRRVQFAEEKDSKSEENPPKQEVMWEYKATDGQIHGPFPTSSFVAWQQQGYFKGETAVDMRQAQSNDEAAAESNNESNKKQKLECEKVSAEQEMLNDFEDSDGEDDSPAADD---------KEKTNENPWKRSDTIDFS 298
[Close]
BLAST of NO16G01140 vs. NCBI_GenBank
Match: CCI43275.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 82.0 bits (201), Expect = 5.300e-12
Identity = 71/260 (27.31%), Postives = 97/260 (37.31%), Query Frame = 0 
Query:  131 FNLKTERTEGYFDETGHFVWKKEEGG--EDPWLASLENEEDLEARIGEAAXXXXXXXXXXXXXXXXXXXXXXXXXQDKLLRLMRPGETVLRALKRLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFDLVTELADSLLRAGVVDVYDKQYEVMKTHLMEDXXXXXXXXXXXXXXXXXXXXXXERKKRPASGISFAVAERGGGEGAMWEYKG-PDGLVHGPYSTQEIGKWRSQGFFTGGTAVEMR 388
            F++K E+ +G FDE GHFVW KEE    ED W+     E+   AR                              ++ L +L+ PGE VL AL+RLG                                            QFDL+TE A  L+  G VD Y +  E                                 + +    +S A A +   E  MWEYKG  +G +HGP++T  I +W+ QG+F G  +VEMR
Sbjct:   50 FDMKDEKDDGRFDENGHFVWNKEEKNVQEDAWMEGYTEEQVERAR---------KAHLRINAREETEETLTIVKAKELLGQLLEPGENVLNALRRLG----------TKRPKRPLRKRQRSDAGKDTKIHEPVPQTEEEKRQFDLITEAAALLMTHGHVDTYSQLQE------------------EFIEAENSVARNDTLEAKGGDAVSTASANKAPSE-VMWEYKGLENGEIHGPFATSTILQWKQQGYFIGEKSVEMR 271
[Close]
BLAST of NO16G01140 vs. NCBI_GenBank
Match: ETI36192.1 (hypothetical protein F443_17633 [Phytophthora parasitica P1569])

HSP 1 Score: 80.9 bits (198), Expect = 1.200e-11
Identity = 82/340 (24.12%), Postives = 124/340 (36.47%), Query Frame = 0 
Query:  128 MEPFNLKTERTEGYFDETGHFVWKKE--EGGEDPWLASLENEEDLEARIGEAAXXXXXXXXXXXXXXXXXXXXXXXXXQDKLLRLMRPGETVLRALKRLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFDLVTELADSLLRAGVVDVYDKQYEVMKTHLMEDXXXXXXXXXXXXXXXXXXXXXXERKKRPASGISFAVAERGGGEGAMWEYKGPDGLVHGPYSTQEIGKWRSQGFFTGGTAVEMRRVGGKGERXXXXXXXXXXXXXXXXKKVTFSAESLAADFGEDEEEVVEGMDDGGEGKGXRKKGEDEEGEWVNSDAIDWA 466
            M  F+++ E+ EG+FD  G+FVW  E  +  E+ WL  +  ++   AR  ++                             L  L++P ETVL+ALKRLG                                            QF+ +TE AD L+R+G V+VY    ++ +  + E+                       R+ + A        E    +  MWEYK  DG +HGP+ T     W+ QG+F G TAV+MR+     E                 +KV+   E L      D E+     DD         K +  E  W  S+ ID++
Sbjct:    9 MTAFDMEEEKDEGHFDADGNFVWDDEAKKVQEEAWLDDISEQQMGAARSAKS--------RREFRDEQAEETMTKEVANRTLATLLKPRETVLQALKRLG-------------SKKSARVRPGYKRKQAQKNETEPEQTAEEKKQFEQITEAADFLMRSGEVEVYS---QIKEEFIPEE-----------------ELLAQRRRVQFAEEKDSKSEENPPKQEVMWEYKATDGQIHGPFPTSSFVAWQQQGYFKGETAVDMRQAQSNDEAAAESNNESNKKQKLECEKVSAEQEMLNDFEDSDGEDDSPAADD---------KEKTNENPWKRSNTIDFS 298
[Close]
BLAST of NO16G01140 vs. NCBI_GenBank
Match: XP_002900909.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY59716.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 79.7 bits (195), Expect = 2.600e-11
Identity = 72/263 (27.38%), Postives = 101/263 (38.40%), Query Frame = 0 
Query:  128 MEPFNLKTERTEGYFDETGHFVWKKE--EGGEDPWLASLENEEDLEARIGEAAXXXXXXXXXXXXXXXXXXXXXXXXXQDKLLRLMRPGETVLRALKRLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFDLVTELADSLLRAGVVDVYDKQYEVMKTHLMEDXXXXXXXXXXXXXXXXXXXXXXERKKRPASGISFAVAERGGGEGAMWEYKGPDGLVHGPYSTQEIGKWRSQGFFTGGTAVEMRR 389
            M  FN++ E+ EG+FD  G+FVW  E  +  E+ WL     ++  E +IG A                             L  L+ P ETVL ALKRLG                                            QF+ VTE AD LLR+G VDVY    ++ +  + E+                       R+ + A        E+   +  MWEYK  DG +HGP+ T     W+ QG+F G +AV+MR+
Sbjct:    1 MTGFNMEEEKDEGHFDADGNFVWDDESKKVQEEAWL-----DDVSEQQIGAA---KSAKSRREYRDEQVEETMTEEAANRTLATLLNPRETVLHALKRLG-------------SKKSTRMRPGNKRKQAQRSETEPSQTAEEKKQFEQVTEAADFLLRSGEVDVYS---QIKEEFVPEE-----------------ELIAQRRRVQFAEETEAKSEEKPPKQEVMWEYKATDGQIHGPFPTSSFVAWQQQGYFKGESAVDMRQ 222
[Close]
BLAST of NO16G01140 vs. NCBI_GenBank
Match: XP_009845637.1 (hypothetical protein H257_18302 [Aphanomyces astaci] >ETV64871.1 hypothetical protein H257_18302 [Aphanomyces astaci])

HSP 1 Score: 79.0 bits (193), Expect = 4.500e-11
Identity = 71/270 (26.30%), Postives = 97/270 (35.93%), Query Frame = 0 
Query:  121 FNEAGDKMEPFNLKTERTEGYFDETGHFVWKKEEG--GEDPWLASLENEEDLEARIGEAAXXXXXXXXXXXXXXXXXXXXXXXXXQDKLLRLMRPGETVLRALKRLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFDLVTELADSLLRAGVVDVYDKQYEVMKTHLMEDXXXXXXXXXXXXXXXXXXXXXXERKKRPASGISFAVAERGGGEGAMWEYKGPDGLVHGPYSTQEIGKWRSQGFFTGGTAVEMRR 389
            + + G +M  FNLK +R EG+FDE+G+FVW KEE    ED W   LEN    E    E A                             + ++  GETVL+ALKRLG                                            +FD +TE  D L+R G  DVY    E +                                          V +       +WEYK  DGL+ GP+ +    +W++QG+F G +AV+MRR
Sbjct:   91 YADEGVRMMAFNLKEDREEGHFDESGNFVWAKEEQPMQEDAW---LENVSAQEMEGAERA-----RILRQEARTDDEETWTERRATSVFMEVLEEGETVLKALKRLG---------------------------KKKKGSKGPEQTADMKREFDELTEATDFLMRQGKADVYHTPKEQL------------------------------------------VPQAPPPPPVLWEYKSQDGLIQGPFPSSNFVEWQAQGYFRGDSAVQMRR 283
The following BLAST results are available for this feature:
BLAST of NO16G01140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24035.12.100e-7748.94lin1 family protein [Nannochloropsis gaditana][more]
CCA20426.15.700e-1428.52conserved hypothetical protein [Albugo laibachii N... [more]
GAX94758.11.800e-1233.96Hypothetical protein PINS_002634 [Pythium insidios... [more]
XP_008896130.13.100e-1224.41hypothetical protein PPTG_04060 [Phytophthora para... [more]
ETL29855.13.100e-1224.41hypothetical protein L916_17065 [Phytophthora para... [more]
ETP34125.13.100e-1224.41hypothetical protein F442_17489 [Phytophthora para... [more]
CCI43275.15.300e-1227.31unnamed protein product [Albugo candida][more]
ETI36192.11.200e-1124.12hypothetical protein F443_17633 [Phytophthora para... [more]
XP_002900909.12.600e-1127.38conserved hypothetical protein [Phytophthora infes... [more]
XP_009845637.14.500e-1126.30hypothetical protein H257_18302 [Aphanomyces astac... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003099NSK003099Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01140.1NO16G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631237gene_5991Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100040g30gene6457Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01140.1NO16G01140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01140 ID=NO16G01140|Name=NO16G01140|organism=Nannochloropsis oceanica|type=gene|length=3641bp
GCACAAAGGCCATGACGATGCTGTGGTGCGTGGGGAGTTGTGGGGAGAGA
GTGGGTGTTGGGTGTGGTCTCGCTGGGGCTTGTTTGTTTTTGGCTGGGGT
TGCTTGATTTCGATCATGACGCTGAGGGTATGGTGTGAGTGCATGGAAAA
GGCCAGGCAACAACCCGCCAGTCCTCACGAGCGATTCAGCACATAGAGAC
GATCGTAGTGGTCGTTGTGGAGGGGTTGAGAAGGCGTGGGGGCAGAGAGT
GCCAGCGGTGCCCGCCGGCCCTCGTAGGAACAAGGTAAGATGTGGTGTGT
GTGAGATGTTTCTTGCTCGCCTGTTGTAGTAGCAAGGGCAATTCGTGGGA
CGATGAAATCCCAAAAAACAACGACCTGGTCTTCTCAAAGCGCCCCCACT
ATTGGCCTGCGCCAAGAGTAAGCAAATGAATGTGATAAATTAGTCTTGAG
AGTGCTCTATCATGCTATTGTAGCTCTGGCACATGACCATGACGATGATT
TTCCTCCGTATTTCGATTATTGCCTTGGGTTTTACACTCCCATGTACCCC
ATCTTCCGGCCTCACGACAAAAATATACTGCGCACTTAGATAGCGGGCGG
TAAGGCTGTGAGGATGATGGATGATAAGTATGATGCCCTGTCAAGCATGT
TTGAGCCTCTCAAATGAAATGGTGATGATGACGGGACAGCGTCTGGCCAT
AGCAATGGTAGGAACAAGAGCTGCTCATGCTGCCTCCGCAGTCAGGAAGA
GGGACAGAGAAAAATGAGGAGGCAGAGGAGGTCGATAACTTCTAAGGAAA
TGAAGAGGGAAAAGGGTCGGAAGAACAAGATGGATGGTGGGAGGATGACA
AGGGGAGACGAGAGATATCTAAGGGGGGGAGCCGATATGTGTATGGCGGG
ATCTCGGTACTCTCGAAAATCGTTTTTTGCTTATCACTGCAAACATGTGC
TGAATGGCTTTGGGCAAGTAGCGTTAGGAGGCCTTGGCCTCCTCCTTGGG
CAACTTGACAGCGTAAACCGGGGTGAGGGAGGGAGGGAGGAAAGGAGGTT
AGGAGGGAATGAGGGAGGAGGGAAGGAGAGAAGGAGAGAGGGAGGGAGGA
CAACCAGAAAAAACACTACCAACTTTAGAAGGGGTAGCCCTTCATAAGGA
AAAAGGTACGAACATACGTTTCTCTGCTGTCCCTTCCTCCCTCCCTCCTT
ACCCACCTACTTCCCTCCTCCACGGCTCCGGCTCCTTGTTCAACCACACA
ATCGGAAATCTCCGCTTTGAAGATGTCCATCAGTCACTTTATGACGTATC
AGCAAGCCAAGAGTTGGCTCGAGATCGCCCTCGGTGAGCAAGACGTCCCT
CCCTCCCTCCCCACACCTTCAGGCTCTCTCCTGCCCGCCTTCCCTCGTTC
CCTCCTTCATTTCCCCGTCGCTGGCCCGTGCTTCACCTATGATGCTTAAG
GCCACCTTTCAACCACCATCATCTCCATTGAAAATCACGACGACGCCGTC
AAACGCATCAGTTAACCCACCCACTTATTCACTCACTCACTTTCTCATTC
ACTTTCACTCGCAAATAAATCGACAGACTTGAAAGTGGTTGTGGTGGCGA
CATCGACCGAAAACAGGAAGAACAAAGGGTTGGAAAAAAGAGGAAAAATT
CAGCATGGATTCGTAAGCCTCTGTTTTTGGACCAAGAAATGAAAGAACTA
TAATAATAAGTTTAAAAAGATTAAACCTCCCCACCCCACTCGCTACGGAG
TGTCTGCCGCCGAATACAAGTTAGCGATGGCTACAACGCGAGTCTTGTCT
TAACATCACACTCTCACGTGTCTCGCTATGCACACAACTACATGGAGCAA
CAGCAGTGGCAGAAATGTCAGGCCGAGGCGCCGGGCGCGGGGGAGGCCGT
GGTTTGGGAGGCCGTGGTGGGGAAGGTCGTGGTGGGGGAGGGCGCGGTGG
ACGAGGAGGACATGGAAGAGGAGGCGAAGAAAAAGAAGTCACTGGAGCAG
ATGGTAACGGCAGCGGCGGTACATGCGTGCGAACAACCGAGTTCGAAGAT
GAATTTGACACGGTGCGGTCAACGCGGCAGATTAAGGGGGACGAGGGGGA
TGAATATGTTGCGGGGGCCGCGACGGGAAGAGACTTGGAAGGGGGAGATG
ACGATGAGGAAGATGACAATGTCCGACGGATGACCAAGCAATTTGCCTGG
GAGGAGGAGAGGATGGAGGAGGATTTCAATGAGGCCGGGGATAAAATGGA
GCCTTTCAATTTGAAGACAGAGCGGACGGAAGGCTACTTTGATGAGACGG
GCCATTTCGTCTGGAAGAAGGAGGAGGGTGGGGAAGACCCTTGGTTGGCC
TCGTTGGAGAATGAGGAGGATTTGGAGGCACGCATTGGGGAGGCAGCGGT
GGCGCGGAAGAAGAAgtgcgtttggggagaaatggagggaagcaggggga
tgtggttcgcgtggtggctctgggtttcgtccgtcttcagacgttctctt
ctcccctccttcatgcacgtgtgcgtctcctttgtagcattaactcacac
ctttctcactccctcccctccctcccccttccatgtcaaaacagAGATGA
TGAAGAGGATGGGGTGGAAGAACCTCCTGAGGTCGTTGACAAGGTCTTGC
TCCAAGACAAACTTCTCCGACTCATGCGTCCTGGCGAGACGGTCCTTCGT
GCCCTCAAGCGCCTTGGGCCTGGGGGAGGTGCAGCCGCAGCAGCAGCAAA
AACAGCGGCAACAGCAGCAAAAGCAGCTGGAGGGCCACCGAAAGGAGGGA
AAGCAACCGTAGTAAAGCGGAGGGATGAGCGCACGGAGGAGGAGAAGAGG
CAGTTTGACTTGGTGACGGAACTTGCAGATTCGTTACTAAGGGCCGGGGT
GGTGGACGTTTACGACAAGCAATACGAAGTGATGAAAACCCACCTCATGG
AGGACGAGGAGGAGGATGCTCGACGAGCAGCAGCAGCAGCAGGAAGAGCA
GGCGCTGGAGCAGGAATAAGTGAAAGAAAAAAACGGCCAGCATCCGGCAT
CAGTTTTGCGGTTGCTGAACGAGGAGGGGGGGAGGGGGCGATGTGGGAGT
ACAAGGGTCCTGATGGTCTTGTGCACGGGCCGTATTCTACACAGGAGATA
GGGAAATGGCGGTCCCAAGGCTTCTTCACGGGGGGTACGGCGGTGGAAAT
GAGGAGAGTTGGGGGGAAAGGAGAGAGGAGGAAGGAGGGAGGAGGAGAGG
GGGAAGGGGAGGGAGGGGAGAAGCGGAAAAAGGTGACGTTCAGTGCGGAA
AGTCTGGCGGCGGATTTTGGGGAGGACGAGGAGGAAGTGGTGGAGGGGAT
GGACGACGGGGGAGAGGGGAAGGGCGGGAGGAAGAAAGGGGAGGATGAGG
AGGGAGAGTGGGTGAACTCGGATGCGATTGATTGGGCAGAAGAAACGTAG
GGATGGGGGAGTGGGGAAGAGGAATCAAAAAAAAAAAAAAAGAAAAAAAA
AAGGGAGAGAGAGAGAGGCGAAGACGGGAGAGACGAAAAGAAAAATGATG
TCTGAGTAGAGGATTGAAGGCAGCCTAGGCAGAGCATTAATGAAGATTAA
ACCAAGATTGACACAAAGGAATAACAAGATAACAAAAGTTA
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protein sequence of NO16G01140.1

>NO16G01140.1-protein ID=NO16G01140.1-protein|Name=NO16G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MSGRGAGRGGGRGLGGRGGEGRGGGGRGGRGGHGRGGEEKEVTGADGNGS
GGTCVRTTEFEDEFDTVRSTRQIKGDEGDEYVAGAATGRDLEGGDDDEED
DNVRRMTKQFAWEEERMEEDFNEAGDKMEPFNLKTERTEGYFDETGHFVW
KKEEGGEDPWLASLENEEDLEARIGEAAVARKKKDDEEDGVEEPPEVVDK
VLLQDKLLRLMRPGETVLRALKRLGPGGGAAAAAAKTAATAAKAAGGPPK
GGKATVVKRRDERTEEEKRQFDLVTELADSLLRAGVVDVYDKQYEVMKTH
LMEDEEEDARRAAAAAGRAGAGAGISERKKRPASGISFAVAERGGGEGAM
WEYKGPDGLVHGPYSTQEIGKWRSQGFFTGGTAVEMRRVGGKGERRKEGG
GEGEGEGGEKRKKVTFSAESLAADFGEDEEEVVEGMDDGGEGKGGRKKGE
DEEGEWVNSDAIDWAEET*
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Synonyms
Publications