NO16G01080, NO16G01080 (gene) Nannochloropsis oceanica

Overview
NameNO16G01080
Unique NameNO16G01080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4996
Alignment locationchr16:339525..344520 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:339525..344520 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G01080 vs. NCBI_GenBank
Match: XP_005855172.1 (hypothetical protein NGA_2110200 [Nannochloropsis gaditana CCMP526] >EKU21188.1 hypothetical protein NGA_2110200 [Nannochloropsis gaditana CCMP526] >EWM24000.1 hypothetical protein Naga_100040g24 [Nannochloropsis gaditana])

HSP 1 Score: 315.1 bits (806), Expect = 2.300e-82
Identity = 171/302 (56.62%), Postives = 211/302 (69.87%), Query Frame = 0 
Query:    4 TAWTRALFPRWKGHNVCWREVLGPSQNRLLLPWGFIPGQDVQTKVAPRIQRLVKETKLDPTSPSYSSHYRNHASNEIIQDLFHSLADDFAKGSEQAYLAVAESYL-TPTCGSSS-----FTQSNYCTPDLSCFLEDVKRSYTEAGVQPFLRVESVEARLQSLRMEEGLLSKNTYYFFGGTMGREEALTHILEGVIGPEGRLLQELEGDVPRRLVAEVEINVREIFWF------------GGLKEKKEEGWGAGV--EKERKIHFFTFESDWLGGEREEELEWVISNINDVVASPSLSRALMQ 286
            T W R LFPRWKG+NV W+EVLGPSQ+R+LLPWGF+  +DVQ +VA RI+ L    K     P +     +  ++EI  +L  SLA+D + G++QAY  +   +L  P  G  +     FT SNYCTPDLSCFLED+KRSYTE GV+P L VESV A+L+ LR+EEGLLSKNTY  F GTMGR EALTHI EGVIGPEGRLLQELEG+VPRRLVAEVE++V E FWF               ++  E+G   G   E +++ H+FTFESD+ G   E +LEWV+SNINDV+ASPSLSRAL+Q
Sbjct:    8 TRWARGLFPRWKGYNVRWKEVLGPSQDRMLLPWGFMGEEDVQGRVASRIRWL--SEKQPTVIPQHEHMPGDLTTSEIANELSASLAEDMSHGAQQAYRRIVSYFLAVPGSGEQAGKYGDFTNSNYCTPDLSCFLEDIKRSYTEWGVKPCLHVESVRAKLRCLRVEEGLLSKNTYALF-GTMGRYEALTHIWEGVIGPEGRLLQELEGNVPRRLVAEVELSVEESFWFQSRPATAWPRVGNNAEQDLEQGLTGGKQGEMKKRTHYFTFESDYFGD--EGQLEWVVSNINDVIASPSLSRALIQ 304
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BLAST of NO16G01080 vs. NCBI_GenBank
Match: CBJ26520.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 105.5 bits (262), Expect = 2.700e-19
Identity = 68/170 (40.00%), Postives = 98/170 (57.65%), Query Frame = 0 
Query:  109 TPTCGSSSFTQSNYCTPDLSCFLEDVKRSYTEAGVQPFLRVESVEARLQSLRMEEGLLSKNTYYFFGGTMGREEALTHILEGVIGPEGRLLQELEGDVPRRLVAEVEINVREIFWFGGLKEKKEEGWGAGVEKER----KIHFFTFESDWLGGEREEELEWVISNINDVV 275
            TPT     F   +  +P++S FL DV  SY   G+ P L V SVEA+L  + +  G +SKNT +   G M  +EA  H+  G++GPEG L+ ELEG  P+R++A+VE+   E F         E+G G  V K      K+H+ T +S+ +G  ++ ELEW I+NINDV+
Sbjct:  166 TPT----DFFDFDVASPEMSMFLNDVLESYRAQGLVPRLSVASVEAKLCKVGVRLGGISKNTNF---GMMSADEARYHLTMGMLGPEGVLINELEGRAPQRVIADVELTCEEEF-------VVEDGKGNVVHKLESQGPKVHYITLQSN-IG--KDAELEWQITNINDVI 318
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BLAST of NO16G01080 vs. NCBI_GenBank
Match: CEL92248.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 89.0 bits (219), Expect = 2.700e-14
Identity = 64/222 (28.83%), Postives = 107/222 (48.20%), Query Frame = 0 
Query:   10 LFPRWKGHNVCWREVLGPSQNRLLLPWGFIPGQDVQTKVAPRIQRLVKETKLD-PTSPSYSSHYRNHASNEIIQDLFHSLADDFAKGSEQAYLAVAESYLTPTCGSSSFTQS------NYCTPDLSCFLEDVKRSYTEAGVQPFLRVESVEARLQSLRMEEGLLSKNTYYFFGGTMGREEALTHILEGVIGPEGRLLQELE--GDVPRRLVAEVEINVREIF 223
            +FPRW+ H V   ++     +   L WGF+    V+  ++    +L++  K         S        N+ + D+    A++  +G + AY  VA+ Y+  T    +   +         TP L  FL +V  +Y +  ++P+L VE V  R+  +R+E+G  S  +     G M + EAL H   GV+GPEG L ++++    VPRR+V +VE+  RE F
Sbjct:   17 IFPRWREHMVSRADLAHMKMD--ALRWGFVEQDRVRQLLSQLNSKLLERQKAQRAEGREVSDDELTDEQNQALTDM-GITAEELKEGMKTAYECVAQLYVDATSPDPAVRAAARQRFGEILTPSLKHFLMEVLDTYAKHQLKPYLVVEEVHPRVLDVRVEKG--SGESELGILGRMDQREALYHFFSGVLGPEGALSRDIQHPSGVPRRIVVDVELAAREKF 233
The following BLAST results are available for this feature:
BLAST of NO16G01080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005855172.12.300e-8256.62hypothetical protein NGA_2110200 [Nannochloropsis ... [more]
CBJ26520.12.700e-1940.00expressed unknown protein [Ectocarpus siliculosus][more]
CEL92248.12.700e-1428.83unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003095NSK003095Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01080.1NO16G01080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593390gene_5986Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100040g24gene6453Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01080.1NO16G01080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01080 ID=NO16G01080|Name=NO16G01080|organism=Nannochloropsis oceanica|type=gene|length=4996bp
GTCCTCATGCTGATATTACGGCCTATGAGACGGGTTGTGTGGGAGTGGAA
AGAAGGGGCACAAGCTAAGGTATAATTGGATTCCGATCTGTTGCCTGTCT
TTGGCCACTTTTTCGGGGAAGTATGCCGTGTATGCTTGCCTACAATCCTC
AGAGAGCCTAAACTTTTGGGCGTTCCATGTTTCCAAACGGCATGGTGCCC
TACTATTGCCAGGTCAAAAAACCTGTCAAAGTCGCTAGAAAAACTCGGAC
AAGGAAATAAGGGATGACAACAATTTATTGTTGGGAGGCTCCCCCTCGTA
TGCAAGTCCTCGAAGACGTCAGGTTGCATGCGATAGTTCTAGAGAGATGT
AGGAACTCAAAGAACTACTATTCCCCAGCCTCGTAATATCGTAATACCTG
CCTCATCTACTTCTGCCTCCTCTTGTTCCTCTCGCTTCTGCCTCTTCTTG
CCCAAACAACTCTCAACTTCAACTTTCAACTACCTTGgtaagcaccatgt
cgattcctgctatttgtgtcctctctagcatttcccacacattcctttct
aaaagacatcttggattcgaccgtgattctcggtagtttaccactcgaca
agcctgggccacactcaattaccaagctgatcgcccctccccttacgccc
ccacaacgcgacatcaacagAACACGGCGACCTAACGTGGCCCTTATCTA
TACCGCACTGCTTCTTTTCTGGAGCTGTAGCCTTTTCGTCATTATGTCCC
TCACGGCCTGGACACGTGCCCTATTCCCGCGGTGGAAGGGACATAACGTT
TGCTGGCGCGAAGTCTTGGGACCCTCCCAAAATCGGTTGCTGCTGCCCTG
GGGCTTCATCCCAGGCCAAGACGTTCAAACCAAGGTAGCACCGCGTATCC
AGCGACTGGTTAAGGAAACGAAGCTTGATCCAACATCGCCATCTTATTCC
TCGCACTATCGCAACCATGCCAGCAATGAGATTATCCAAGATCTTTTTCA
TTCCTTAGCAGACGACTTCGCAAAAGGGTCCGAGCAAGCCTACTTAGCCG
TCGCTGAATCATATCTGACTCCAACCTGTGGCAGCAGCTCCTTTACACAG
TCGAACTACTGTACCCCGGACTTGTCTTGTTTCTTGGAGGATGTCAAAAG
GTCTTATACCGAGGCTGGCGTCCAACCTTTTTTACGGGTAGAGTCAGTTG
AAGCGAGGTTACAATCGTTACGGATGGAAGAGGGTTTGCTGTCTAAGAAC
ACGTATTATTTCTTCGGGGGAACGATGGGGAGGGAGGAGGCCTTGACACA
TATCTTGGAGGGGGTGATTGGTCCGGAAGGAAGGCTGTTACAAGAGCTGG
AGGGTGATGTTCCCCGACGCTTAGTGGCGGAGGTAGAGATAAATGTGAGG
GAAATTTTTTGGTTTGGGGGCTTGAAGGAGAAGAAGGAGGAAGGATGGGG
CGCGGGAGTGGAAAAAGAGAGGAAGATCCATTTCTTTACGTTTGAGAGTG
ATTGGTTGGGAGGGGAGAGGGAGGAGGAGTTGGAATGGGTGATAAGTAAT
ATAAATGATGTGGTGGCTTCACCTTCTCTATCGCGGGCGTTGATGCAAGG
ATAGGGTGAAAGAGTAGAAGAAGAATGGCGTTCGTTATAGTCTTAGATGG
AACCACAAAGAGGGCGGCTTAGGGAGTAGATGTAGACAAGGTGATGAGGG
GTGTAAGTTTTACATTATAGCTGCAGCGGAGAATCAGAAGATGCACACAC
AAATGTTTGGGGTTTCCAAAACAAATCATTTCAAAAAAGTATTCATTTGA
CAAGAGATAAGCCAAGAACTGAGAAAGGGGATTTTATGCTACTTGATGAA
AGGGTAAAGCACAGAATATGCCATATAATCAAGCACCGGAAAGCAAAGTC
AGACAGCCCAAGACAGACGAGAGCTCACCGAAGCACATGACGTCAGTAAC
ACAGTACCTCGAACAAAAATTGAGCTGGTCCAAGCCTATGCGGGGCCTCA
CACGTGAGGAACCAAGCCTATGCGGGGCCTCACACGTGAGGAAATCTCAC
ACGGTAGGATGCCCCGGCCTCGCGGCACAATGCCCGGAAGAGGGGAATCA
CCATTAATCACTTGCAAGGGAAACCAGCTTTCATAATAACCCACCAAATA
TCATAAAGATTACCCAACACGCGCAAGGTCTTTTTTTTTTTTTAAAAAAA
ACTATTGCTGAGGATGATTTCTCCCTTAAAAAGTGTAATGCCTCCCTCTC
GAGTCAAGTCATTCTTTTTTCCATTCCTTTGCATTTAAATACACTGGTCA
CTTTTTCCGCATCGCCGCCTTCCTGTGCTGCCACCACGTAATACGGACGT
ACGGCTGCTTTTCCTCTACTTATATGTCTTGTCACTGTTGAGATGCTCTT
GCAGCAGCTGCCGCTGCTGCTGTTGCACATGCAATTGCTGTTGCTGTTGC
TGTTGCTGCTGCTGCTGCTGCTGCTACTTCTCCTACTGCTACTTATCCCT
CCTTTCTATTGGTCTCTGTGTGCTAATTGCCTCGCCATTTGAGCTGACAC
TCAGGCCAGATAGGGAAGGAGACTCCTGGTAAACGCATGCACGTGTCTCT
CATCTTTCACTTGCACGTCATCACCATCTCCTCCTCTCCCTCCTTCTCCT
CCCTCTTCTTCCTTCTCCTCACCATTCCGTCCTTTTCTTAATCTTCCCGA
ACACAGTATGCCTCATATCCCATCCTTTGTTCGTCAGTGCCTCCAAAAAA
CATTCCTCCGTCTCCTTGGCCTTGGCATGTGCAGACTTCAACATCACCAA
CGCCCTCTCTTGCCTCTGATCCTCCTCCTTCTCCTCCTCCATCGACCACG
CTTGCCGTTGTTTCTGCTTCTGCCCTTCCTCCACCCCTCCCTCCTTCCAG
GCCTCTTCAAAATACGCCCACGTCAGCAGAGCCCTCAATATATCACGTTG
ATTAGCCCCTGTATGCAAAACAATCGACGCTCCTACCGTCGGAGACCAAG
TGACCAAAAAATGTTTCTCCCCCTCCACGCCTCCCTCCCTCCCTCCCTCC
TTCTTTTCCACCGAAGAGAAGGCCTCACGGACCTTATGCAGCTCTTCAAG
GGAACAACCCGTCTGACTGACAGTCCTGAAAATGGAGGTATCGATCGAAG
CTGGGTTCCAAAAGATCCTCTCCTCCCTCGAGGCCTCGTTTGGATTCAGC
ACTCCTTCCCTCCCCTTCCTCACAAAGGCCTTCACCACCATCGCTCCCCT
CTCCAGATTCAAACTTGAGAACACCACCGATCGGATCTCATTATAAATCG
CAAACACATCCACGCAACTCAACAAAATGTACGCCACTGCCATTCCAACC
TGCGCCGTCCCTATAGACTTACTCAAAAAGATACCCAGCAAAATACCCAG
AAGATCAACCACTGCGATCTGAGCCTCGCCCTTCGCGGTGATGTCCCCCA
AGTTCTGACTGTCACCTGCAAAACTTTTATACATGGCGTTTCGCGTCGCC
GAGCTGGTCAACATGGACATTTGCTTTAAAACATTCGCAATGGTGGCAAG
CAATAAAAACGCTGCCGGGAAAATGTACGTCAGGACTTCCAAGCCTGTCC
CGGCGGCAAAGAGAAGGCTCGAGCGGAACCGCCAGCGTTTTGCGTCTGAA
TCGAACCTTCGGCCCATTTTTGATGCCCACATGATCCTTCCAAATTTCCC
AAAAGCGTCTTTTTGGATCCAGTTAAACGTTGCTGTTAGCCCTACCCTTT
CTGTCTTCAGCCCCAAGGCGAGGAGTAACGCCCGCGTACCAAACACTGAC
ACCGTCGCCGAGATGAGCCGTTGCAAAACCCGCCAGCGCGTGTAGTTGTA
ATAATCAGGAGTGACGTGATCGGGGAGAAACGACTGACGGAGGTATCGTT
CTATCCGACCTTTGATGCTGTCACCATGGGTGGGGTGTGTGATAACTTGA
AATTTGCGGCGTTCCGCATCCCAGCCCACTCGTCGCTTTCGGACCCCATC
GAAAGATTCAACGAAAGTAGGCGTGTTTGATAGTACTGCTGCTGCTCCAG
TTGCTGCTGTAGGTCCGCCTGTGGCATACGGATGGGAGGAGGCGGTCGCG
CCAAGACCAGTGGCACCTGAAGAGAAGAGCTCGCTGTCGCTTCCTCGCCC
CCTATCCCCGCCCCGAACGGCAGTCAAATGTACCAAATTACTCCTTGCGC
CAGTGCTGCTGACAGCGGCCATCCGTCTGGAAGCGGAGCTTCGGGTGGTG
ACAATGGCCATGGGCATGATATTGTTGTCCTCGTCGATATGTGGTGGGGA
ACTTGGGGACAGGGAGGAGTAGGGACGACGACGGCGAGCTTGGGGATATA
CGGAGGGAGAAGGTAGTTTGGAGGCAAAGGCAGCGACGAGGGGTAGGAGC
CCTGTTATTCTTGAACTGCTGTCGCCGGTGGTCCAGTAAAGGAGGAGGCA
GGGTGGGAGGCAGAAGCAGAGACAGAAGAGGAAATGACGGTGCGTGGTAA
TGCCGGCTTTGCTTGTTGCTGATACCCGACAGAATGGTGCGGACGACAGG
GCCGCACTTCTTGTCCTCGTCATATAAATGCGACTGTCGCTTGTAGATTG
GCGGGGCTGATGATGAGGAGGAGGAGAGGACGAGAAAGGAATCTTCCACC
ACTGGCTAGCCAGCAGGCAATACGTTTATTGCATCCAAAGCACGTGCTGT
AGCTGTTGCTGCTGTTATTGGGCTTTAATCCTGTACTTTGAGTTACGTAG
GATGTGGGTGAGGGCGGTGTGAGGGAGGGATATCATTGATGTGGAATAGG
GCAACTTCAAGGGCCTGCGAGCCCCCATAAAATTCGCCGGGCAGGTCCAG
AGCACAAAATTAGAGCATATCAGGTACGCAAACCCATGTTCCTGACCTTG
GAAGGGTTGGGCCAAAAATATCAATAAATCATGGTATTGGTGAGCGAGGC
TGTGCTTACTTGACTTCTTTTGCTCGCTGATGAACGCGGTTGAAGC
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protein sequence of NO16G01080.1

>NO16G01080.1-protein ID=NO16G01080.1-protein|Name=NO16G01080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MSLTAWTRALFPRWKGHNVCWREVLGPSQNRLLLPWGFIPGQDVQTKVAP
RIQRLVKETKLDPTSPSYSSHYRNHASNEIIQDLFHSLADDFAKGSEQAY
LAVAESYLTPTCGSSSFTQSNYCTPDLSCFLEDVKRSYTEAGVQPFLRVE
SVEARLQSLRMEEGLLSKNTYYFFGGTMGREEALTHILEGVIGPEGRLLQ
ELEGDVPRRLVAEVEINVREIFWFGGLKEKKEEGWGAGVEKERKIHFFTF
ESDWLGGEREEELEWVISNINDVVASPSLSRALMQG*
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Synonyms
Publications