NO16G01060, NO16G01060 (gene) Nannochloropsis oceanica

Overview
NameNO16G01060
Unique NameNO16G01060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1261
Alignment locationchr16:336569..337829 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:336569..337829 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO16G01060 vs. NCBI_GenBank
Match: EWM24013.1 (hypothetical protein Naga_100040g22 [Nannochloropsis gaditana])

HSP 1 Score: 278.5 bits (711), Expect = 1.700e-71
Identity = 143/197 (72.59%), Postives = 160/197 (81.22%), Query Frame = 0
Query:    1 MGEQTELKTVKEQVVDLAVTEGVRAGVGAGCLAGLGVFAADKYSPWFHKSLGISGKVGTVMIAITGSFFLFTELALVDAQRHPKEYGFDDSPALI---TDAXXXXXXXXXXXXRIAKSSNYEMVHFKPRYLFAKAANHLYDHPFQMLIAMSAPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFRE 195
            M E+ +  +VK+QVVDLAV EGVRA VGAGCL+GLGVFAA KYSPWF+KSLGISGKVGTVMIAITGSFFLF+EL L+DAQRHP+ YGF D+PAL    TDA            +  K     M+H KPRY++A  ANHLYDHPFQML+A+S PIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFR+
Sbjct:   17 MEEKRDALSVKQQVVDLAVAEGVRAAVGAGCLSGLGVFAAHKYSPWFNKSLGISGKVGTVMIAITGSFFLFSELVLIDAQRHPQAYGFMDTPALTAAPTDA------AKPDAEKREKDEGLGMIHIKPRYVYATVANHLYDHPFQMLVALSTPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFRD 207          
BLAST of NO16G01060 vs. NCBI_GenBank
Match: GAX97065.1 (Hypothetical protein PINS_004948 [Pythium insidiosum])

HSP 1 Score: 119.8 bits (299), Expect = 1.000e-23
Identity = 61/201 (30.35%), Postives = 109/201 (54.23%), Query Frame = 0
Query:    9 TVKEQVVDLAVTEGVRAGVGAGCLAGLGVFAADKYSPWFHKSLGISGKVGTVMIAITGSFFLFTELALVDAQRHPKEYGFDDSPALITDAXXXXXXXXXXXXRIAKSSNYEMVHFKPRYLFAKAANHLYDHPFQMLIAMSAPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFREWMTKHGGRIPLDKED 210
            T K+ +V  A+TEG+++G  A  + G GV  A  Y P F   LG SGK   V+ ++  +F + +E  L+   R+P++Y     P  +               ++ +  + +  H        + ANH+YDHP+Q L+++  P++G  F  +    G++ SQ+I+HTR+ GQ +V+++L  +MGF ++M KHG  + ++ E+
Sbjct:   12 TAKDIIVMHALTEGIKSGATAAAIVGTGVVLAHNYWPAFRTRLGASGKTALVVSSLLATFAVASEKRLLAGARNPEKYLASLDPNYV-------------ELKVHEHHSLKWYH--------RLANHVYDHPYQSLMSVGVPLVGSIFAYQATNQGIQRSQQIMHTRIYGQGAVVVLLLASMGFHDYMQKHGRFVAIEDEE 191          
BLAST of NO16G01060 vs. NCBI_GenBank
Match: OQR88271.1 (hypothetical protein ACHHYP_06983 [Achlya hypogyna])

HSP 1 Score: 116.7 bits (291), Expect = 8.700e-23
Identity = 63/190 (33.16%), Postives = 103/190 (54.21%), Query Frame = 0
Query:   11 KEQVVDLAVTEGVRAGVGAGCLAGLGVFAADKYSPWFHKSLGISGKVGTVMIAITGSFFLFTELALVDAQRHPKEYGFDDSPALITDAXXXXXXXXXXXXRIAKSSNYEMVHFKPRYLFAKAANHLYDHPFQMLIAMSAPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFREWMTKHG 201
            ++ ++  + TEG++A   AG  AG  V AA   SPWF   LG+SGKVG  ++A   SF +  E  L+   R+P +Y  + + A                  I K S++ +       L  + AN +YD+PF+ L   +AP++G  F+ + +   ++ SQ+I+HTR+ GQ + +++L  TMGF +WM+K G
Sbjct:   12 RDVIISNSTTEGLKAAAIAGVTAGSLVAAAHHQSPWFRNRLGVSGKVGLAVMASLASFAIVAEQDLLKGSRNPDQYIAELNQA---------------EAPIEKKSDHHLA------LHHRLANFVYDYPFRTLAFSAAPLVGLIFFDQSRNTNIQFSQKIMHTRIYGQGACVVLLLSTMGFHDWMSKRG 180          
BLAST of NO16G01060 vs. NCBI_GenBank
Match: GAY05633.1 (Hypothetical protein PINS_013445 [Pythium insidiosum])

HSP 1 Score: 114.0 bits (284), Expect = 5.700e-22
Identity = 61/201 (30.35%), Postives = 106/201 (52.74%), Query Frame = 0
Query:   10 VKEQVVDLAVTEGVRAGVGAGCLAGLGVFAADKYSPWFHKSLGISGKVGTVMIAITGSFFLFTELALVDAQRHPKEYGFDDSPALITDAXXXXXXXXXXXXRIAKSSNYEMVHFKPRYLFAKAANHLYDHPFQMLIAMSAPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFREWMTKHGG-RIPLDKED 210
            V++ +   A T G++AG     + G  V AA+K+SP F   LG+SGK G V+++  G+F + ++  LV   R+P+ Y     P  +                        +   K  + + +AAN +YDHP++ L ++  P++GG +  +     ++ SQ+I+HTR+ GQ +V+++L  +MGF ++M KHG    P D E+
Sbjct:   23 VRDIITMHAYTSGLKAGAMTSTVTGAAVLAANKFSPTFRARLGVSGKWGLVVMSFMGAFGVVSDKRLVAGARNPELYLASMDPTAV---------------------EQRLERKKRLHWYQRAANFVYDHPYRSLASVGVPLVGGIYAFQRANTAIQASQQIMHTRIYGQGAVVVLLLASMGFHDFMQKHGRFEEPADDEE 202          
BLAST of NO16G01060 vs. NCBI_GenBank
Match: XP_008606884.1 (hypothetical protein SDRG_03045 [Saprolegnia diclina VS20] >EQC39612.1 hypothetical protein SDRG_03045 [Saprolegnia diclina VS20])

HSP 1 Score: 113.6 bits (283), Expect = 7.400e-22
Identity = 61/190 (32.11%), Postives = 101/190 (53.16%), Query Frame = 0
Query:   11 KEQVVDLAVTEGVRAGVGAGCLAGLGVFAADKYSPWFHKSLGISGKVGTVMIAITGSFFLFTELALVDAQRHPKEYGFDDSPALITDAXXXXXXXXXXXXRIAKSSNYEMVHFKPRYLFAKAANHLYDHPFQMLIAMSAPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFREWMTKHG 201
            ++ ++  + T+G++A   AG  AG  V  A   SPWF   LG+SGKVG  ++A   SF +  E  L+   R+P  Y       L+ D               AK  ++  +H        +AAN++YD+PF+ L+  + P++G  F+ + +   ++ SQ+I+HTR+ GQ S +++L  TM F +WM+K G
Sbjct:   12 RDAIISNSTTQGIKAAAIAGVTAGSLVAVAHHQSPWFRNRLGVSGKVGLAVMASLASFAIVAEQDLLRGSRNPDAY----LAELLEDNAPI----------AAKPDHHLPLH-------QRAANYVYDYPFRTLVCSATPLVGLIFFDQSRNANIQFSQKIMHTRIYGQGSCVVLLLGTMAFHDWMSKRG 180          
BLAST of NO16G01060 vs. NCBI_GenBank
Match: XP_008606882.1 (hypothetical protein SDRG_03043 [Saprolegnia diclina VS20] >EQC39610.1 hypothetical protein SDRG_03043 [Saprolegnia diclina VS20])

HSP 1 Score: 113.2 bits (282), Expect = 9.600e-22
Identity = 61/190 (32.11%), Postives = 99/190 (52.11%), Query Frame = 0
Query:   11 KEQVVDLAVTEGVRAGVGAGCLAGLGVFAADKYSPWFHKSLGISGKVGTVMIAITGSFFLFTELALVDAQRHPKEYGFDDSPALITDAXXXXXXXXXXXXRIAKSSNYEMVHFKPRYLFAKAANHLYDHPFQMLIAMSAPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFREWMTKHG 201
            ++ ++  + T G++A   AG  AG  V  A   SPWF   LG+SGKVG  ++A   +F +  E  L+   R+P  Y                        ++ KS N+         L+ +AAN++YD+PF+ L+  +AP++G  F  + +   ++ SQ+I+HTR+ GQ S +++L  TM F +WMTK G
Sbjct:    7 RDIIISNSTTSGLKASAIAGVTAGSLVTLAHHQSPWFRNRLGVSGKVGLAVMASLATFAIVAEQDLLKGSRNPDAY--------------IAELNETETKQVIKSDNH-------LPLYQQAANYVYDYPFRTLVCSAAPLVGLIFLDQSRNANIQFSQKIMHTRIYGQGSCVVLLLGTMAFHDWMTKRG 175          
BLAST of NO16G01060 vs. NCBI_GenBank
Match: OQR88287.1 (hypothetical protein ACHHYP_06981 [Achlya hypogyna])

HSP 1 Score: 112.8 bits (281), Expect = 1.300e-21
Identity = 64/198 (32.32%), Postives = 103/198 (52.02%), Query Frame = 0
Query:    9 TVKEQVVDLAVTEGVRAGVGAGCLAGLGVFAADKYSPWFHKSLGISGKVGTVMIAITGSFFLFTELALVDAQRHPKEYGFDDSPALITDAXXXXXXXXXXXXRIAKSSNYEMV------HFKPRYLFAKAANHLYDHPFQMLIAMSAPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFREWMTKHG 201
            T ++ ++  + TEG++A   A   AG  V  A   SPWF   LG+SGKVG  ++A   +F +  E  L+   R+P +Y                         IA+ +N E        H  P  L+ +AAN++YD+PF+ L+  +AP++G  F  + +   ++ SQ+I+HTR+ GQ S +++L  TM F +WM+K G
Sbjct:    5 TKRDIIISNSTTEGLKASAVAAVTAGSLVTLAHHQSPWFRNRLGVSGKVGLAVMASLATFAIVAEQDLLRGSRNPDQY-------------------------IAELNNTETEKVVTSDHHLP--LYQQAANYVYDYPFRTLVCSAAPLVGLIFLDQSRNANIQFSQKIMHTRIYGQGSCVVLLLGTMAFHDWMSKRG 175          
BLAST of NO16G01060 vs. NCBI_GenBank
Match: XP_012197102.1 (hypothetical protein SPRG_03119 [Saprolegnia parasitica CBS 223.65] >KDO31903.1 hypothetical protein SPRG_03119 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 112.5 bits (280), Expect = 1.600e-21
Identity = 60/194 (30.93%), Postives = 102/194 (52.58%), Query Frame = 0
Query:   11 KEQVVDLAVTEGVRAGVGAGCLAGLGVFAADKYSPWFHKSLGISGKVGTVMIAITGSFFLFTELALVDAQRHPKEY----GFDDSPALITDAXXXXXXXXXXXXRIAKSSNYEMVHFKPRYLFAKAANHLYDHPFQMLIAMSAPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFREWMTKHG 201
            ++ ++  + T+G++A   AG  AG  V  A   SPWF   LG+SGKVG  ++A   SF +  E  L+   R+P  Y      D++P                    AK  ++  +H        +AAN++YD+PF+ L+  + P++G  F+ + +   ++ SQ+++HTR+ GQ S +++L  TM F +WM+K G
Sbjct:   51 RDAIISNSTTQGIKAAAIAGVTAGSLVAVAHHQSPWFRNRLGVSGKVGLAVMASLASFAIVAEQDLLRGSRNPDAYLAELHEDNAPI------------------AAKPDHHLPLH-------QRAANYVYDYPFRTLVCSATPLVGLIFFDQSRNANIQFSQKVMHTRIYGQGSCVVLLLGTMAFHDWMSKRG 219          
BLAST of NO16G01060 vs. NCBI_GenBank
Match: GAY04917.1 (Hypothetical protein PINS_012730 [Pythium insidiosum])

HSP 1 Score: 112.5 bits (280), Expect = 1.600e-21
Identity = 61/201 (30.35%), Postives = 105/201 (52.24%), Query Frame = 0
Query:   10 VKEQVVDLAVTEGVRAGVGAGCLAGLGVFAADKYSPWFHKSLGISGKVGTVMIAITGSFFLFTELALVDAQRHPKEYGFDDSPALITDAXXXXXXXXXXXXRIAKSSNYEMVHFKPRYLFAKAANHLYDHPFQMLIAMSAPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFREWMTKHGG-RIPLDKED 210
            V++ +   A T G++AG     + G  V AA+K+SP F   LG+SGK G V+++  G+F + ++  LV   R+P+ Y     P  +                        +   K  + + +AAN +YDHP++ L ++  P++GG +  +      + SQ+I+HTR+ GQ +V+++L  +MGF ++M KHG    P D E+
Sbjct:   23 VRDIITMHAYTSGLKAGAMTSTVTGAAVLAANKFSPTFRARLGVSGKWGLVVMSFMGAFGVVSDKRLVAGARNPELYLASMDPXAV---------------------EQRLERKKRLHWYQRAANFVYDHPYRSLASVGVPLVGGIYAFQRANTAXQASQQIMHTRIYGQGAVVVLLLASMGFHDFMQKHGRFEEPADDEE 202          
BLAST of NO16G01060 vs. NCBI_GenBank
Match: XP_012197104.1 (hypothetical protein SPRG_03121 [Saprolegnia parasitica CBS 223.65] >KDO31905.1 hypothetical protein SPRG_03121 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 111.3 bits (277), Expect = 3.700e-21
Identity = 60/190 (31.58%), Postives = 100/190 (52.63%), Query Frame = 0
Query:   11 KEQVVDLAVTEGVRAGVGAGCLAGLGVFAADKYSPWFHKSLGISGKVGTVMIAITGSFFLFTELALVDAQRHPKEYGFDDSPALITDAXXXXXXXXXXXXRIAKSSNYEMVHFKPRYLFAKAANHLYDHPFQMLIAMSAPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFREWMTKHG 201
            ++ +++ + T G++A   AG  AG  V  A+  SPWF   LG+SGKVG  ++A   +F +  E  L+   R+P  Y                        ++ KS      H  P Y   +AAN++YD+PF+ L+  +AP++G  F  + +   ++ SQ+++HTR+ GQ S +++L  TM F +WM+K G
Sbjct:    7 RDIIINNSTTSGLKASAIAGVTAGSLVALANHQSPWFRNRLGVSGKVGLAVMASLATFAIVAEQDLLKGSRNPDAY--------------IAELNETETKQVIKSD-----HHLPMY--QQAANYVYDYPFRTLVCSAAPLVGLIFLDQSRNANIQFSQKVMHTRIYGQGSCVVLLLGTMAFHDWMSKRG 175          
The following BLAST results are available for this feature:
BLAST of NO16G01060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24013.11.700e-7172.59hypothetical protein Naga_100040g22 [Nannochlorops... [more]
GAX97065.11.000e-2330.35Hypothetical protein PINS_004948 [Pythium insidios... [more]
OQR88271.18.700e-2333.16hypothetical protein ACHHYP_06983 [Achlya hypogyna... [more]
GAY05633.15.700e-2230.35Hypothetical protein PINS_013445 [Pythium insidios... [more]
XP_008606884.17.400e-2232.11hypothetical protein SDRG_03045 [Saprolegnia dicli... [more]
XP_008606882.19.600e-2232.11hypothetical protein SDRG_03043 [Saprolegnia dicli... [more]
OQR88287.11.300e-2132.32hypothetical protein ACHHYP_06981 [Achlya hypogyna... [more]
XP_012197102.11.600e-2130.93hypothetical protein SPRG_03119 [Saprolegnia paras... [more]
GAY04917.11.600e-2130.35Hypothetical protein PINS_012730 [Pythium insidios... [more]
XP_012197104.13.700e-2131.58hypothetical protein SPRG_03121 [Saprolegnia paras... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01060.1NO16G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593377gene_5984Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100040g22gene6451Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01060.1NO16G01060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01060 ID=NO16G01060|Name=NO16G01060|organism=Nannochloropsis oceanica|type=gene|length=1261bp
ATGGGAGAGCAGACAGAGCTCAAGACTGTCAAGGAGCAGGTCGTCGACCT
GGCTGTGACAGAGGgtacgtcctgccggttcgcccacccctctatccctt
cctttctctctcccttcctccctatttcactccctccctttcctcctctt
tccgacatcactgcttccaaatcctcacattgcagGTGTCCGCGCAGGTG
TGGGTGCGGGATGCTTGGCAGGCTTGGGGGTATTTGCGGCCGACAAATAC
AGTCCTTGgtaagtgaaaacggccatgtgtgagtggcattgatgtaggcc
atattccccttttagggctaccaccaccacccatgttctcatatacactc
cgcaatccttcgccttttttgcagGTTTCATAAATCGTTGGGCATCAGCG
GGAAGGTAGGCACGGTCATGATTGCCATTACGGGGAGCTTCTTCCTTTTC
ACCGAGCTGgtacgtagaaagagaggatgaggataatgggtttatgaggg
gaggagacatattgactcagatggattatacaatacgacgactgtttctg
gtggggctacaggacccaatgtaatagcactgcgtgtgttatgattggcg
tagattgccatggccattaatgtgtgtcggtctctcggcattccctttgt
tctgggtgtctggttatctctttcccctctaccctcttccctccctcatc
ctcaacatccacctacctccatgtcagGCGCTTGTTGACGCCCAACGTCA
CCCGAAGGAATACGGCTTTGACGATTCCCCTGCCCTCATCACCGACGCCG
CGACCGCTGCTGCTGCTGCTGCTGCTGAAGAGGCCAGAATTGCCAAGAGC
AGCAATTATGAGATGGTCCACTTTAAGCCTCGGTATTTGTTCGCTAAGGC
CGCGAATCATTTGTACGACCACCCTTTTCAGATGCTGATCGCGATGAGTG
CACCGATCATAGGTGGATTTTTCTACACGGAGATGCAGAAGCCAGgtaag
ggagggtgggagggagggagagaaggagtgttttattcacgtgcttgctg
gtgagtcctccacgagttttacatgctgtctcaatccatttttaattact
cttcccaattaatcacagGCTTGAAACTGTCGCAACGCATCATCCACACG
CGAGTCCAAGGCCAAGCGTCCGTCATTCTGATTTTGGCATTAACGATGGG
CTTTCGGGAATGGATGACCAAACACGGTGGCCGCATCCCTTTGGATAAAG
AGGACTCGTAA
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protein sequence of NO16G01060.1

>NO16G01060.1-protein ID=NO16G01060.1-protein|Name=NO16G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MGEQTELKTVKEQVVDLAVTEGVRAGVGAGCLAGLGVFAADKYSPWFHKS
LGISGKVGTVMIAITGSFFLFTELALVDAQRHPKEYGFDDSPALITDAAT
AAAAAAAEEARIAKSSNYEMVHFKPRYLFAKAANHLYDHPFQMLIAMSAP
IIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFREWMTKHG
GRIPLDKEDS*
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Synonyms
Publications