NO16G01050, NO16G01050 (gene) Nannochloropsis oceanica

Overview
NameNO16G01050
Unique NameNO16G01050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1189
Alignment locationchr16:334682..335870 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:334682..335870 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G01050 vs. NCBI_GenBank
Match: EWM24036.1 (hypothetical protein Naga_100040g21 [Nannochloropsis gaditana])

HSP 1 Score: 228.4 bits (581), Expect = 2.400e-56
Identity = 123/176 (69.89%), Postives = 142/176 (80.68%), Query Frame = 0 
Query:    1 MRTVTTLVALSALMGASAFLAPVPAPQQHTRVQAGASADNDDDWKSIINSEANLSNYLGQSGFRYNMNQTPEEDKTEG-RNLFSKMFGATSNNAARMSARSYGRSLTIDTYDAAKAAENKEWIAKYGYKRWGTSYVDKSDLETEKSAAATSI-APKKAAPAPKAASKPEFSFPKFG 175
            MRT++TLVALSA++G SAFLAP+PAP+Q TRV AGASA  DDDWK+IINSEANL++YL + GFRY +N+TPEE + EG  N+F KMFGATSNNAARM+ARS+GRSLTID YDA KAAENKEW+AKYGYKRW TSYVDKSDLETEK AA  ++              KP FSFPKFG
Sbjct:   77 MRTISTLVALSAIVGCSAFLAPMPAPRQLTRVHAGASAGGDDDWKNIINSEANLASYLSEEGFRYCLNKTPEELEKEGDYNIFEKMFGATSNNAARMAARSFGRSLTIDAYDAKKAAENKEWVAKYGYKRWVTSYVDKSDLETEKGAAPAAVXXXXXXXXXXXQPRKPAFSFPKFG 252
The following BLAST results are available for this feature:
BLAST of NO16G01050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24036.12.400e-5669.89hypothetical protein Naga_100040g21 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003093NSK003093Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G01050.1NO16G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|78299gene_5983Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100040g21gene6450Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G01050.1NO16G01050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G01050 ID=NO16G01050|Name=NO16G01050|organism=Nannochloropsis oceanica|type=gene|length=1189bp
ATGCGTACGGTCACGACGCTTGTGGCGCTGTCTGCCTTGATGGGAGCAAG
TGCCTTCTTGGCCCCTGTACCGGCGCCTCAGCAGgtatgtcgttagtggc
gaggacgagcaatggatgcgaggaggcttttgacacgtcgctatggtgtt
cggctggaaaaaaatggcagtgagagacgcgatgtatgtgtacaaatacc
gagatgtttcatcctgttgatgtgaccgtggaaaaaaccccagtcttgtc
tctcttggttgccactctctcccagggtgtaccttttttgcctttcatcc
cctacgctccctccttaccacatatattgtacgaacgacgatggcgaaaa
gcagtttaagcctgctgtgcttatgccttttaaatttccctgtcttctat
ccaaactcctctgtttcccagcggcggaaaccagcgctcgcattcccaac
ctcacccctctgcctctcttcctcattgtcgctcacgacacctttctcct
ctccgcatgaaactttccccctatcattttttcagCACACCCGTGTCCAG
GCTGGTGCCAGCGCAGATAACGACGATGACTGGAAGAGTATCATTAACTC
GGAAGCCAACCTTTCCAACTATCTGGGCCAGAGTGGCTTCCGCTACAACA
TGAACCAAACCCCGGAAGAGGACAAGACGGAGGGACGCAACCTGTTCTCG
AAGATGTTTGGTGCTACCAGTAATAACGCGGCGCGTATGTCGGCCCGCTC
TTATGGACGGTCGCTGACTATTGACACGTACGATGCTGCCAAGGCAGCTG
AGAACAAGGAGTGGATCGCCAAGTACGGGTACAAGCGATGGGGCACTTCC
TACGTGGACAAGTCCGACCTCGAGACCGAAAAGAGCGCCGCCGCCACCTC
CATTGCCCCGAAGAAGGCTGCACCTGCCCCCAAGGCGGCTAGCAAGCCCG
AATTTTCCTTCCCTAAGTTCGGTGGTGGAGGTGGAGCGAAGAGCGCGGCA
GCGGCGCCTGCTAAGAAGACGAGCCCCGTCAAGGTGACGGCTGCCAAACC
CGCCGCTGCTGCCAAGCCCGCTGCACCTGCTGCTGCTCCTAAGGCCAAGG
CTGCTGCTCCCGCTACGGGGCCCTTGGCCAGCAAGCCCCAAGCGCAGGGG
AAGGGGAACCTCAATCTGCTTAAGAAGCAGAGCAATTAA
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protein sequence of NO16G01050.1

>NO16G01050.1-protein ID=NO16G01050.1-protein|Name=NO16G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MRTVTTLVALSALMGASAFLAPVPAPQQHTRVQAGASADNDDDWKSIINS
EANLSNYLGQSGFRYNMNQTPEEDKTEGRNLFSKMFGATSNNAARMSARS
YGRSLTIDTYDAAKAAENKEWIAKYGYKRWGTSYVDKSDLETEKSAAATS
IAPKKAAPAPKAASKPEFSFPKFGGGGGAKSAAAAPAKKTSPVKVTAAKP
AAAAKPAAPAAAPKAKAAAPATGPLASKPQAQGKGNLNLLKKQSN*
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Synonyms
Publications