NO16G00990, NO16G00990 (gene) Nannochloropsis oceanica

Overview
NameNO16G00990
Unique NameNO16G00990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1588
Alignment locationchr16:318071..319658 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:318071..319658 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G00990 vs. NCBI_GenBank
Match: EWM24014.1 (protein of unknown function DUF4151 [Nannochloropsis gaditana])

HSP 1 Score: 137.9 bits (346), Expect = 7.000e-29
Identity = 105/200 (52.50%), Postives = 117/200 (58.50%), Query Frame = 0 
Query:  209 PTGFFDDPDADAAAHNIDLVAQKEAAVKAEWEEFQKFAAAVVMSEAXXXXXXXXXXXXXXXXXXXXHMYYTARLAGLMATSGEAAGRRGKKGERNRGQEKEG-----GGREDALAAIEGVPSKREAPALVAGAVEXXXXXXXXXXXXXXXXXXXXXXXXXXFEISAMLRAKKKRKKEVMEEAFEKDYVPFDPLDWRAKTF 404
            PTGFFDDP+ADA AHNIDL AQKEA  + EWE+FQKFAA V ++EA    XXXXXXXXXXXXXX  H+YYTARLAGL+ATSGEA  RR KK                G       A+ GVPSK EAP   A                               EISAMLR KK+RKKE M+E  +  YV  DPLDWRAK+F
Sbjct:  216 PTGFFDDPEADALAHNIDLNAQKEAEARKEWEDFQKFAADVAVAEAGQEAXXXXXXXXXXXXXXLEHLYYTARLAGLIATSGEATERRMKKXXXXXXXXXXXXXXXKGEAVSNSGALPGVPSKAEAPTWRA-----VPEDEDGDGKERVGDEGREKETVAALEISAMLREKKRRKKEAMQEVVQDGYVAPDPLDWRAKSF 410
The following BLAST results are available for this feature:
BLAST of NO16G00990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24014.17.000e-2952.50protein of unknown function DUF4151 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003087NSK003087Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00990.1NO16G00990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593339gene_5974Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100040g14gene6444Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00990.1NO16G00990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00990 ID=NO16G00990|Name=NO16G00990|organism=Nannochloropsis oceanica|type=gene|length=1588bp
ATGGGGGACAGTGTCCGAGAAATGATGCGGCAAGCCGCCAAACAGAAGCA
GAAAAAAGCAGATGCCTTAGCCGCAGCCCTGAAGAACAGCAAGGGGAAGG
AGCAGgtaggcaggtgtgggtgtgggtaagagatgggaacgtgcacgtgt
tgtttttgtgcgtttggaggagtggctgtgaaaggtagtgattgtcgcag
aagtttgcgagatgcgggacgctgaattgttgtttcatttcttgaacccc
atacacacgcactcaaacccccccccccacacacacccccacaaccaccc
gcccaaacacacgcacacgaacacatgtgcatacgcacataacacgtaca
tacacacatttatgcacttacgctcacacgcttttccacacactcacaca
tatttacatagATTCTGGCGCTCATGCGACAAAAAGTAGCCAAAACTGCT
CCCCAAGCAGCATCAGCAAGCCCCCCCCGgtccctcccccccccgcgccc
cgtccttcctcacaatccatgatgcctccccctcctcctccaaaagCCCC
GGGTGCCATGCCCCCACTTCCTCAACCGGAGAAGAAAAAAATCGTCGTTG
CCTCCTTTCCCTCGTCAATGCCCCCCCTCCACCACCACAAGCACGTTCAC
CTGCTCCTCCGCCTGTGGCTGCTGCTCCTCCGCCTGTAGCTGCTGCTCCG
GCTGCCCCTGGTGCTCATCCCACTCCTCATCGTTCGGCCGCAGCGAGATC
GACTGGTATGCTCCCAGGTTTTGAACCCGTAGACTCTGATGACGAGGACG
AGGACGAGAAAGGGATGGCGAAAACGGCTGTGGACGTGCCTGCCGCCTTG
CCCCCGGGCTTCTTTGACAGCGGCATGGAAGAAGAGGGAGCGGAAGAGGA
GGAAGGGGACGAAGAGAATGAACCTTTGCCCATCCCCCCTCATTCTCCAT
CTTCTCATCCTCCTCCTCCTCCCTCTACAAACGACACCACTGCATTACCC
ACCGGCTTCTTCGATGACCCGGATGCAGACGCCGCTGCTCACAACATCGA
TCTTGTCGCACAAAAAGAAGCAGCAGTTAAAGCTGAATGGGAGGAGTTTC
AAAAATTTGCGGCTGCCGTCGTCATGTCGGAGGCTGATCAGGAAGCTGAA
GAGGAGGCGGAGAGGGAGGAGGAGGAGCAGAGGAAGGAGCTGGAACACAT
GTATTATACTGCGAGGCTGGCAGGGTTGATGGCTACGTCGGGGGAGGCGG
CGGGAAGGAGAGGGAAGAAGGGAGAGAGAAATAGGGGGCAAGAGAAAGAG
GGGGGAGGGAGGGAGGATGCGTTGGCTGCTATTGAAGGGGTACCGTCGAA
GAGGGAGGCCCCGGCGCTGGTGGCTGGTGCTGTGGAGGACGAGGGAGAGG
AAGAGCGTGAGGGGGAAGTGAAGAGGAGGGATGTTCAAAATGGAGGAGGG
GGGGAGAGTGCGTCGTTTGAGATCTCGGCCATGCTTCGGGCAAAAAAGAA
GCGGAAAAAGGAGGTGATGGAAGAGGCCTTTGAGAAGGATTACGTCCCTT
TTGATCCTTTGGATTGGCGGGCGAAGACATTCGGTTGA
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protein sequence of NO16G00990.1

>NO16G00990.1-protein ID=NO16G00990.1-protein|Name=NO16G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MGDSVREMMRQAAKQKQKKADALAAALKNSKGKEQILALMRQKVAKTAPQ
AASASPPRPGCHAPTSSTGEEKNRRCLLSLVNAPPPPPQARSPAPPPVAA
APPPVAAAPAAPGAHPTPHRSAAARSTGMLPGFEPVDSDDEDEDEKGMAK
TAVDVPAALPPGFFDSGMEEEGAEEEEGDEENEPLPIPPHSPSSHPPPPP
STNDTTALPTGFFDDPDADAAAHNIDLVAQKEAAVKAEWEEFQKFAAAVV
MSEADQEAEEEAEREEEEQRKELEHMYYTARLAGLMATSGEAAGRRGKKG
ERNRGQEKEGGGREDALAAIEGVPSKREAPALVAGAVEDEGEEEREGEVK
RRDVQNGGGGESASFEISAMLRAKKKRKKEVMEEAFEKDYVPFDPLDWRA
KTFG*
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Synonyms
Publications