NO16G00880, NO16G00880 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO16G00880 vs. NCBI_GenBank
Match: EWM24046.1 (hypothetical protein Naga_100280g10 [Nannochloropsis gaditana]) HSP 1 Score: 168.7 bits (426), Expect = 2.800e-38 Identity = 112/293 (38.23%), Postives = 138/293 (47.10%), Query Frame = 0 Query: 1 MEMGLRYRQWDLSPEEVRLALYAALLLPLADRRYSEAKMKKIKVAPAKDGVVGEGEKGGSGDGGGEMESGSSYLNKWSGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSRYVFARMLKLKARDADKVALLHDVVDGFIPFLKLAAKGGE--GGGGLVEGKEKRATIGWLLLQVGPLWRAALLLAAVKCSVDGREEGREGRGIPMASTVRVESTKKQKEDEGDDTYSYREAALKLSKYIQEVGLEAVWMKAPPFNGEGLRKILPKIPNGPPFRVVMDRQIGIWLREPE 292 ME+GLR+R W LSP EVRLALYAALLLPLA+ RY E KK+ + LNK VSRYVFARMLK+KA+DADK+ LLH VVDGF+PFL+ KG + KR IG L+LQ G +SYR+AAL++S YIQ GL ++++APP +GEGLR++LP IP+GPPFR+VMD Q+GIWLREPE Sbjct: 1 MELGLRFRHWGLSPAEVRLALYAALLLPLANLRYREKTGKKLNL----------------------------NLNK---------------------------------KPLEVSRYVFARMLKMKAKDADKLILLHQVVDGFVPFLEEGKKGRREXXXXXXXXARLKREQIGGLMLQGG----------------------------XXXXXXXXXXXXXXXXXXXXXXFSYRQAALQVSDYIQSAGLSEIYLQAPPLDGEGLRRVLPGIPHGPPFRLVMDAQVGIWLREPE 204
BLAST of NO16G00880 vs. NCBI_GenBank
Match: CBJ26899.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 80.5 bits (197), Expect = 1.000e-11 Identity = 61/191 (31.94%), Postives = 87/191 (45.55%), Query Frame = 0 Query: 118 VFARMLKLKARDADKVALLHDVVDGFIPFLKLAAKGGEGGGGLVEGKEKRATIGWLLLQVGPLWRAALLLAAVKCSVDGREEGREGRGIPMASTVRVESTKKQKEDEGDDTYSYREAALKLSKYIQEVGLEAVWMKAPPFNGEGLRKILPKIPNGPPFRVVMDRQIGIWLREPEIREEEMARTLKEAFPEF 309 + A LKL+A+D +V L F L+ A+G R G + VGPLWR AL+L G G + S VR + KE++ +Y + +++ I+ +GLE VW P FNG ++KILP+IP GP F VMD QI + PE +EE +K + F Sbjct: 544 MMADYLKLRAKDPQRVLQLQSAAMDFQLLLRKTARGPLTRANSKPITFPRLAPGLTMRAVGPLWRVALVLGLT---------GDLGTKHILDSNVR---DRGDKEEDAAVIAAY----MSMAREIESMGLEGVWDLKPMFNGGEVKKILPEIPRGPVFSKVMDDQIKWMIANPEGTKEEGLEYIKARYERF 718
BLAST of NO16G00880 vs. NCBI_GenBank
Match: CEM20320.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 75.1 bits (183), Expect = 4.300e-10 Identity = 58/228 (25.44%), Postives = 93/228 (40.79%), Query Frame = 0 Query: 117 YVFARMLKLKARDADKVALLHDVVDGFIPFLKLAAKGGEGG-------------------------------GGLVEGKEKRATIGWLLLQVGPLWRAALLLAAVKCSVDGREEGREGRGIPMASTVRVESTKKQKEDEGDDTYSYREAALKLSKYIQEV----GLEAVWMKAPPFNGEGLRKILPKIPNGPPFRVVMDRQIGIWLREPEIREEEMARTLKEAFPEFS 310 Y+ LKL RDA++V L+ V + + +L GEGG G + +R +G +L + G LW A+L++A G GR P + + +T + + + ++E GL+ VW K PP +G ++ +LPK+P GP F+ VMD Q+ L PE +E +KE F +F+ Sbjct: 128 YLLGDRLKLPKRDAERVDLILSVA---LEYQRLVGDWGEGGVXXXXXXXXXXXXXXXXXXXXXDEADGTTHEGSSASQRYRRVDLGLILRKAGHLWNASLMVAMA---------GAIGRVTPSSPSHTQPTTPPLSGPPPAVPLHSSKHVISSYRAVKEAVEWFGLDGVWDKGPPLDGNAVKSVLPKLPKGPKFKEVMDEQVVWMLGHPEGTADECRAFIKERFADFA 343
BLAST of NO16G00880 vs. NCBI_GenBank
Match: GAX22700.1 (tRNA nucleotidyltransferase [Fistulifera solaris]) HSP 1 Score: 63.9 bits (154), Expect = 9.900e-7 Identity = 41/149 (27.52%), Postives = 69/149 (46.31%), Query Frame = 0 Query: 161 VEGKEKRATIGWLLLQVGPLWRAALLLAAVKCSVDGREEGREGRGIPMASTVRVESTKKQKEDEGDDTYSYREAALKLSKYIQEVGLEAVWMKAPPFNGEGLRKILPKIPNGPPFRVVMDRQIGIWLREPEIREEEMARTLKEAFPEFS 310 + E R +L++VGPLWRA+L+LA E M+ + + ++++ +A + Q++GL +W + P +GE ++K+LP+IP GP FR VMD Q + P + L +FP F+ Sbjct: 566 IHAMEFRQRCAKVLIKVGPLWRASLILAI--------SEQLAALESDMSYAIEGDIVDDSQDEQRRGIIESFDA---FAAAWQQLGLIGIWHQEPLLDGEAVKKLLPQIPRGPAFRDVMDEQANWMISHPGAGVSALESYLVASFPTFA 703
BLAST of NO16G00880 vs. NCBI_GenBank
Match: GAX19227.1 (tRNA nucleotidyltransferase [Fistulifera solaris]) HSP 1 Score: 63.9 bits (154), Expect = 9.900e-7 Identity = 44/149 (29.53%), Postives = 71/149 (47.65%), Query Frame = 0 Query: 161 VEGKEKRATIGWLLLQVGPLWRAALLLAAVKCSVDGREEGREGRGIPMASTVRVESTKKQKEDEGDDTYSYREAALKLSKYIQEVGLEAVWMKAPPFNGEGLRKILPKIPNGPPFRVVMDRQIGIWLREPEIREEEMARTLKEAFPEFS 310 + E R +L++VGPLWRA+L+LA + + EG I A + + ++ G E+ + Q++GL +W + P +GE ++K+LP+IP GP FR VMD Q + P + L +FP F+ Sbjct: 566 IHAMEFRQRCAQVLIKVGPLWRASLILA-----ISEQLAALEG-DISYAIEGDIVDDYQDEQRRG-----IIESFDAFAAAWQQLGLIGIWHQEPLLDGEAVKKLLPRIPRGPAFRDVMDEQANWMITHPGAGVSVLEAYLVASFPTFA 703 The following BLAST results are available for this feature:
BLAST of NO16G00880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO16G00880 ID=NO16G00880|Name=NO16G00880|organism=Nannochloropsis oceanica|type=gene|length=930bpback to top protein sequence of NO16G00880.1 >NO16G00880.1-protein ID=NO16G00880.1-protein|Name=NO16G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bpback to top Synonyms
Publications
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