NO16G00880, NO16G00880 (gene) Nannochloropsis oceanica

Overview
NameNO16G00880
Unique NameNO16G00880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length930
Alignment locationchr16:288909..289838 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:288909..289838 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO16G00880 vs. NCBI_GenBank
Match: EWM24046.1 (hypothetical protein Naga_100280g10 [Nannochloropsis gaditana])

HSP 1 Score: 168.7 bits (426), Expect = 2.800e-38
Identity = 112/293 (38.23%), Postives = 138/293 (47.10%), Query Frame = 0
Query:    1 MEMGLRYRQWDLSPEEVRLALYAALLLPLADRRYSEAKMKKIKVAPAKDGVVGEGEKGGSGDGGGEMESGSSYLNKWSGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSRYVFARMLKLKARDADKVALLHDVVDGFIPFLKLAAKGGE--GGGGLVEGKEKRATIGWLLLQVGPLWRAALLLAAVKCSVDGREEGREGRGIPMASTVRVESTKKQKEDEGDDTYSYREAALKLSKYIQEVGLEAVWMKAPPFNGEGLRKILPKIPNGPPFRVVMDRQIGIWLREPE 292
            ME+GLR+R W LSP EVRLALYAALLLPLA+ RY E   KK+ +                             LNK                                     VSRYVFARMLK+KA+DADK+ LLH VVDGF+PFL+   KG            + KR  IG L+LQ G                                                  +SYR+AAL++S YIQ  GL  ++++APP +GEGLR++LP IP+GPPFR+VMD Q+GIWLREPE
Sbjct:    1 MELGLRFRHWGLSPAEVRLALYAALLLPLANLRYREKTGKKLNL----------------------------NLNK---------------------------------KPLEVSRYVFARMLKMKAKDADKLILLHQVVDGFVPFLEEGKKGRREXXXXXXXXARLKREQIGGLMLQGG----------------------------XXXXXXXXXXXXXXXXXXXXXXFSYRQAALQVSDYIQSAGLSEIYLQAPPLDGEGLRRVLPGIPHGPPFRLVMDAQVGIWLREPE 204          
BLAST of NO16G00880 vs. NCBI_GenBank
Match: CBJ26899.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 80.5 bits (197), Expect = 1.000e-11
Identity = 61/191 (31.94%), Postives = 87/191 (45.55%), Query Frame = 0
Query:  118 VFARMLKLKARDADKVALLHDVVDGFIPFLKLAAKGGEGGGGLVEGKEKRATIGWLLLQVGPLWRAALLLAAVKCSVDGREEGREGRGIPMASTVRVESTKKQKEDEGDDTYSYREAALKLSKYIQEVGLEAVWMKAPPFNGEGLRKILPKIPNGPPFRVVMDRQIGIWLREPEIREEEMARTLKEAFPEF 309
            + A  LKL+A+D  +V  L      F   L+  A+G             R   G  +  VGPLWR AL+L            G  G    + S VR    +  KE++     +Y    + +++ I+ +GLE VW   P FNG  ++KILP+IP GP F  VMD QI   +  PE  +EE    +K  +  F
Sbjct:  544 MMADYLKLRAKDPQRVLQLQSAAMDFQLLLRKTARGPLTRANSKPITFPRLAPGLTMRAVGPLWRVALVLGLT---------GDLGTKHILDSNVR---DRGDKEEDAAVIAAY----MSMAREIESMGLEGVWDLKPMFNGGEVKKILPEIPRGPVFSKVMDDQIKWMIANPEGTKEEGLEYIKARYERF 718          
BLAST of NO16G00880 vs. NCBI_GenBank
Match: CEM20320.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 75.1 bits (183), Expect = 4.300e-10
Identity = 58/228 (25.44%), Postives = 93/228 (40.79%), Query Frame = 0
Query:  117 YVFARMLKLKARDADKVALLHDVVDGFIPFLKLAAKGGEGG-------------------------------GGLVEGKEKRATIGWLLLQVGPLWRAALLLAAVKCSVDGREEGREGRGIPMASTVRVESTKKQKEDEGDDTYSYREAALKLSKYIQEV----GLEAVWMKAPPFNGEGLRKILPKIPNGPPFRVVMDRQIGIWLREPEIREEEMARTLKEAFPEFS 310
            Y+    LKL  RDA++V L+  V    + + +L    GEGG                               G     + +R  +G +L + G LW A+L++A           G  GR  P + +    +T               +  +   + ++E     GL+ VW K PP +G  ++ +LPK+P GP F+ VMD Q+   L  PE   +E    +KE F +F+
Sbjct:  128 YLLGDRLKLPKRDAERVDLILSVA---LEYQRLVGDWGEGGVXXXXXXXXXXXXXXXXXXXXXDEADGTTHEGSSASQRYRRVDLGLILRKAGHLWNASLMVAMA---------GAIGRVTPSSPSHTQPTTPPLSGPPPAVPLHSSKHVISSYRAVKEAVEWFGLDGVWDKGPPLDGNAVKSVLPKLPKGPKFKEVMDEQVVWMLGHPEGTADECRAFIKERFADFA 343          
BLAST of NO16G00880 vs. NCBI_GenBank
Match: GAX22700.1 (tRNA nucleotidyltransferase [Fistulifera solaris])

HSP 1 Score: 63.9 bits (154), Expect = 9.900e-7
Identity = 41/149 (27.52%), Postives = 69/149 (46.31%), Query Frame = 0
Query:  161 VEGKEKRATIGWLLLQVGPLWRAALLLAAVKCSVDGREEGREGRGIPMASTVRVESTKKQKEDEGDDTYSYREAALKLSKYIQEVGLEAVWMKAPPFNGEGLRKILPKIPNGPPFRVVMDRQIGIWLREPEIREEEMARTLKEAFPEFS 310
            +   E R     +L++VGPLWRA+L+LA          E        M+  +  +     ++++        +A    +   Q++GL  +W + P  +GE ++K+LP+IP GP FR VMD Q    +  P      +   L  +FP F+
Sbjct:  566 IHAMEFRQRCAKVLIKVGPLWRASLILAI--------SEQLAALESDMSYAIEGDIVDDSQDEQRRGIIESFDA---FAAAWQQLGLIGIWHQEPLLDGEAVKKLLPQIPRGPAFRDVMDEQANWMISHPGAGVSALESYLVASFPTFA 703          
BLAST of NO16G00880 vs. NCBI_GenBank
Match: GAX19227.1 (tRNA nucleotidyltransferase [Fistulifera solaris])

HSP 1 Score: 63.9 bits (154), Expect = 9.900e-7
Identity = 44/149 (29.53%), Postives = 71/149 (47.65%), Query Frame = 0
Query:  161 VEGKEKRATIGWLLLQVGPLWRAALLLAAVKCSVDGREEGREGRGIPMASTVRVESTKKQKEDEGDDTYSYREAALKLSKYIQEVGLEAVWMKAPPFNGEGLRKILPKIPNGPPFRVVMDRQIGIWLREPEIREEEMARTLKEAFPEFS 310
            +   E R     +L++VGPLWRA+L+LA     +  +    EG  I  A    +    + ++  G       E+    +   Q++GL  +W + P  +GE ++K+LP+IP GP FR VMD Q    +  P      +   L  +FP F+
Sbjct:  566 IHAMEFRQRCAQVLIKVGPLWRASLILA-----ISEQLAALEG-DISYAIEGDIVDDYQDEQRRG-----IIESFDAFAAAWQQLGLIGIWHQEPLLDGEAVKKLLPRIPRGPAFRDVMDEQANWMITHPGAGVSVLEAYLVASFPTFA 703          
The following BLAST results are available for this feature:
BLAST of NO16G00880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM24046.12.800e-3838.23hypothetical protein Naga_100280g10 [Nannochlorops... [more]
CBJ26899.11.000e-1131.94conserved unknown protein [Ectocarpus siliculosus][more]
CEM20320.14.300e-1025.44unnamed protein product [Vitrella brassicaformis C... [more]
GAX22700.19.900e-727.52tRNA nucleotidyltransferase [Fistulifera solaris][more]
GAX19227.19.900e-729.53tRNA nucleotidyltransferase [Fistulifera solaris][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00880.1NO16G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00880.1NO16G00880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00880 ID=NO16G00880|Name=NO16G00880|organism=Nannochloropsis oceanica|type=gene|length=930bp
ATGGAGATGGGCCTCAGGTACCGGCAGTGGGATTTGTCACCGGAGGAGGT
GCGGCTCGCCCTGTACGCGGCCCTGTTGTTGCCTTTGGCCGACAGGAGGT
ATAGCGAGGCGAAAATGAAGAAGATTAAGGTAGCGCCGGCAAAGGATGGG
GTGGTTGGGGAGGGGGAGAAGGGGGGTAGCGGTGACGGTGGTGGTGAGAT
GGAGTCGGGGAGTAGTTATTTGAATAAGTGGAGTGGGAAATCTACAAAGT
CGGCATCAGCAGCGACGGCGGTATCAGCAGCAGCGGCAGCAGCGGCAGCG
GCCGCAGCAGCACCGACATCGAACCAGAAGGTGCAGGAAGTGAGTCGATA
TGTCTTCGCCCGCATGCTTAAATTGAAGGCCCGAGACGCGGATAAAGTGG
CTCTGCTCCATGACGTCGTGGATGGATTCATTCCTTTCCTCAAGCTGGCG
GCGAAAGGAGGGGAGGGGGGCGGGGGGCTGGTGGAAGGGAAAGAGAAGCG
GGCGACAATTGGGTGGTTGCTGCTGCAGGTGGGCCCGCTGTGGCGCGCGG
CGTTGCTCTTGGCAGCGGTAAAGTGCAGTGTGGACGGGAGGGAGGAAGGG
AGAGAGGGGAGGGGGATCCCGATGGCGTCGACCGTGAGGGTAGAATCAAC
AAAGAAGCAGAAGGAGGACGAGGGGGATGACACGTATTCGTACCGAGAGG
CGGCACTGAAGCTTTCCAAGTACATTCAGGAGGTAGGTCTGGAAGCGGTG
TGGATGAAGGCTCCGCCCTTCAACGGGGAGGGCTTAAGAAAGATCTTACC
GAAGATTCCGAATGGTCCTCCGTTTCGGGTAGTGATGGACAGGCAGATCG
GGATTTGGCTGAGAGAACCGGAGATCAGGGAAGAGGAAATGGCAAGAACG
TTAAAGGAAGCGTTTCCTGAGTTTTCGTAG
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protein sequence of NO16G00880.1

>NO16G00880.1-protein ID=NO16G00880.1-protein|Name=NO16G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MEMGLRYRQWDLSPEEVRLALYAALLLPLADRRYSEAKMKKIKVAPAKDG
VVGEGEKGGSGDGGGEMESGSSYLNKWSGKSTKSASAATAVSAAAAAAAA
AAAAPTSNQKVQEVSRYVFARMLKLKARDADKVALLHDVVDGFIPFLKLA
AKGGEGGGGLVEGKEKRATIGWLLLQVGPLWRAALLLAAVKCSVDGREEG
REGRGIPMASTVRVESTKKQKEDEGDDTYSYREAALKLSKYIQEVGLEAV
WMKAPPFNGEGLRKILPKIPNGPPFRVVMDRQIGIWLREPEIREEEMART
LKEAFPEFS*
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Synonyms
Publications