NO16G00710, NO16G00710 (gene) Nannochloropsis oceanica

Overview
NameNO16G00710
Unique NameNO16G00710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length556
Alignment locationchr16:242722..243277 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:242722..243277 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO16G00710 vs. NCBI_GenBank
Match: CBN77444.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 113.6 bits (283), Expect = 4.800e-22
Identity = 62/138 (44.93%), Postives = 79/138 (57.25%), Query Frame = 0
Query:    1 MVGGKFEIGPTAPTTWIVAFRSPRFEWTFRTTDLDKVTARLDYSTRTLRLEARSRCGRRRIEVMMVAPPGSFGPPLYVPTRGGFSCLPGCRESFTATAHIKAVDEG----GRGGGRRIVLEEVCEVPLAALELGGALQ 135
            + GG+F IGP   T++++AFRS R  W FRTTDLD++          L L A+S    R ++  + AP GSFG  +YVPT  GFS  PGC ES+ ATA  +   +G    G G  R +VL E  E  LAALE GG  Q
Sbjct:  565 LTGGRFVIGPITTTSFVLAFRSERHNWNFRTTDLDRIVVTASRKDHRLTLVAKSWGDNRVLKADIRAPEGSFGSAIYVPTPEGFSNAPGCVESYAATARFRLYTKGDKLEGDGVTRPLVLREEVEFKLAALEFGGEYQ 702          
BLAST of NO16G00710 vs. NCBI_GenBank
Match: CEM04057.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 106.3 bits (264), Expect = 7.700e-20
Identity = 65/144 (45.14%), Postives = 81/144 (56.25%), Query Frame = 0
Query:    1 MVGGKFEIGPTAPTTWIVAFRSPRFEWTFRTTDLDKVTARLDYSTRTLRLEARSRCGR----RRIEVMMVAPPGSF-GPPLYVPTRGGFSCLPGCRESFTATAHIKAV---DEGGRGGGRRIVLEEVCEVPLAALELGGALQRL 137
            + GG F IGP +P +W+VA+RSP  +W FRTTDL +V   +  + R +RL   SR  R    RR+ + + AP  SF  PP+ +PT  GFS  PGC ES  A A +KA     E GR G     L E   VPL ALE GG  Q L
Sbjct:  593 LTGGIFRIGPISPLSWVVAYRSPFVQWDFRTTDLHRVEYAISSAQRRVRLVCESRPDRHGYYRRLMIALEAPLWSFTDPPISIPTPEGFSDRPGCVESHVARADVKAFLVNQEDGRSG-----LIEQRTVPLCALEFGGMFQGL 731          
BLAST of NO16G00710 vs. NCBI_GenBank
Match: XP_005836019.1 (hypothetical protein GUITHDRAFT_136224 [Guillardia theta CCMP2712] >EKX49039.1 hypothetical protein GUITHDRAFT_136224 [Guillardia theta CCMP2712])

HSP 1 Score: 77.0 bits (188), Expect = 5.000e-11
Identity = 61/156 (39.10%), Postives = 77/156 (49.36%), Query Frame = 0
Query:    1 MVGGKFEIGPTAPTTWIVAFRSPRFEWTFRTTDLDKVTARLDYSTRTLRLEA----------RSRCGRRRIE----VMMVAPPGSFGPP---LYVPTRGGFSCLPGCRESFTATAHIKAVDEGGRGGGRRIVLEEVCE----VPLAALELGGALQR 136
            + GGKF+IG   P TWIVAFR     + FRTTDL +V AR   S RT  LEA          RSR     +     V + A   +       ++VPT  GF+  PGC ESF AT  ++A    GR   RR   E+  +    + LAALE GG  Q+
Sbjct:  365 VTGGKFKIGGLTPLTWIVAFRVSNTSFNFRTTDLHQVKARFSCSKRTFSLEAFNPFSPLLLSRSRFHLTALSAGDFVQIEANDANMNQDEQNVWVPTLQGFTNKPGCSESFAATVRVRAWK--GRHLQRR--NEDAPDFDESLRLAALEFGGEFQQ 516          
BLAST of NO16G00710 vs. NCBI_GenBank
Match: OLP85180.1 (putative peptidase C1-like protein [Symbiodinium microadriaticum])

HSP 1 Score: 71.6 bits (174), Expect = 2.100e-9
Identity = 44/131 (33.59%), Postives = 61/131 (46.56%), Query Frame = 0
Query:    1 MVGGKFEIGPTAPTTWIVAFRSPRFEWTFRTTDLDKVTARLDYSTRTLRLEARSRCGRRRIEVMMVAPPGSFGPPLYVPTRGGFSCLPGCRESFTATAHIKAVDEGGRGGGRRIVLEEVCEVPLAALELGG 132
            + GG F +       +++A+RSPRF W FR+ DLD +  +                     E+ + AP GSF  PLY PTR G+S  PG  ES+     +K    G        VL+E+ E+   ALE GG
Sbjct: 2894 LTGGAFTVAELTARQFLLAYRSPRFHWDFRSVDLDHIVTQ---------------------ELTVSAPLGSFSEPLYFPTRKGWSNRPGSVESY----RVKIFHRG--------VLQEMLELQQTALEFGG 2991          
The following BLAST results are available for this feature:
BLAST of NO16G00710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
CBN77444.14.800e-2244.93conserved unknown protein [Ectocarpus siliculosus][more]
CEM04057.17.700e-2045.14unnamed protein product [Vitrella brassicaformis C... [more]
XP_005836019.15.000e-1139.10hypothetical protein GUITHDRAFT_136224 [Guillardia... [more]
OLP85180.12.100e-933.59putative peptidase C1-like protein [Symbiodinium m... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003059NSK003059Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00710.1NO16G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593237gene_5950Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00710.1NO16G00710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00710 ID=NO16G00710|Name=NO16G00710|organism=Nannochloropsis oceanica|type=gene|length=556bp
ATGGTGGGAGGCAAATTTGAGATCGGGCCAACGGCTCCTACCACATGGAT
CGTTGCATTCAGGTCCCCACGTTTTGAATGGACGTTTCGGACCACGGACT
TGGACAAGGTAACGGCAAGGCTTGACTATAGCACACGAACATTGAGgtaa
gtgagtgatggagggagtggatgaacgaggacgccatgacctccaatgct
gcttttcattcatccacccatcgccgaagttccctcccccttcactcctc
ctctccctccctccctgttatttccacctctcgcgcaacagATTGGAAGC
CCGCTCAAGATGCGGCCGCCGAAGGATAGAGGTGATGATGGTTGCGCCCC
CAGGCTCCTTTGGCCCTCCACTCTACGTCCCTACCCGAGGGGGCTTCTCG
TGCTTGCCCGGCTGCCGGGAGTCGTTCACGGCCACAGCGCATATCAAGGC
GGTGGACGAGGGGGGGCGCGGAGGGGGAAGGAGGATTGTTTTGGAAGAGG
TGTGTGAGGTGCCTTTGGCGGCACTGGAGCTGGGAGGGGCGTTGCAGCGA
TTGTGA
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protein sequence of NO16G00710.1

>NO16G00710.1-protein ID=NO16G00710.1-protein|Name=NO16G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MVGGKFEIGPTAPTTWIVAFRSPRFEWTFRTTDLDKVTARLDYSTRTLRL
EARSRCGRRRIEVMMVAPPGSFGPPLYVPTRGGFSCLPGCRESFTATAHI
KAVDEGGRGGGRRIVLEEVCEVPLAALELGGALQRL*
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Synonyms
Publications