NO16G00660, NO16G00660 (gene) Nannochloropsis oceanica

Overview
NameNO16G00660
Unique NameNO16G00660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1908
Alignment locationchr16:230418..232325 +

Link to JBrowse

Properties
Property NameValue
DescriptionArsenite inducuble rna associated protein aip
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:230418..232325 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0046872metal ion binding
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035896AN1-like_Znf
IPR000058Znf_AN1
Homology
BLAST of NO16G00660 vs. NCBI_GenBank
Match: EWM24053.1 (arsenite inducuble rna associated protein aip [Nannochloropsis gaditana])

HSP 1 Score: 266.9 bits (681), Expect = 8.900e-68
Identity = 185/347 (53.31%), Postives = 212/347 (61.10%), Query Frame = 0
Query:   26 MEFQDLGAHCSVGFCNLRDFLPFHCDCCKRTFCLEHRTYAAHSCPHQGQKQQIAIKCPVCALTLTLTAAQDPNLVWQLHSSSAECKPAQKTKRERCGVKGCKEVMGPSNTHVCGACRKEVCLRHRYKDHHACTGAVKQGRGGMRGVASWFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQGTTERXXXG----------RVVGAGGAYPGQAGHKXXXXXXXXXXXXXXXXXXXXXPPS--IRPSQAGQTADGGCPFCRASFVDPVLLVEHVEREHGEDGRREVGGGEGGGI-GCQVA 360
            MEFQDLGAHC+V  CN+RDFLPF CDCC +T CLEHRTY++H+CPHQG+KQQ+AI+CP+C+ TL LTAAQDPN+VWQLHS S +C P +K KRERC VK CKE++GPSN+HVCG CRK VCLRHRY+D HAC G    GRGG RG+A WF XXXXXXXXXXXXXXXX                                    XXXXXXXXXXXXXXXXXX       +G+ +R   G          R  G G A  G+                           S  I  SQAGQ  DGGCP+C A F DPV LVEHVE  H  D  RE GGG G G+ GC++A
Sbjct:    1 MEFQDLGAHCAVTTCNMRDFLPFLCDCCHKTHCLEHRTYSSHACPHQGRKQQMAIRCPLCSATLALTAAQDPNVVWQLHSGSRDCDPTRKAKRERCAVKACKEILGPSNSHVCGVCRKRVCLRHRYQDQHACAG--PGGRGGGRGIAGWFSXXXXXXXXXXXXXXXXKASTKKDARPSVPGEKGRSAPHPTRNSPSGFAPGTTXXXXXXXXXXXXXXXXXXR------RGSRDRQPDGASRSLQAVGDRRRGEGEARGGKIEENGCSNNNLRDRQVVGVGSGYPGATSLAIGSSQAGQQVDGGCPYCHALFHDPVKLVEHVETMHKGDQLRE-GGGSGEGLSGCRLA 338          
BLAST of NO16G00660 vs. NCBI_GenBank
Match: XP_009821948.1 (hypothetical protein H257_00785 [Aphanomyces astaci] >ETV89548.1 hypothetical protein H257_00785 [Aphanomyces astaci])

HSP 1 Score: 148.3 bits (373), Expect = 4.600e-32
Identity = 65/132 (49.24%), Postives = 85/132 (64.39%), Query Frame = 0
Query:   30 DLGAHCSVGFCNLRDFLPFHCDCCKRTFCLEHRTYAAHSCPHQGQKQQIAIKCPVCALTLTLTAAQDPNLVWQLHSSSAECKPA----QKTKRERCGVKGCKEVMGPSNTHVCGACRKEVCLRHRYKDHHAC 158
            DLG HCS   C+  DFLPF CDCC   FCLEHRTY AHSCP+ G+K   AI CP+C  T+ LT  QD N++++ H+ +  C P     +K  + RC  + C+E++  SNT  C  CRK+VCLRHR++  H C
Sbjct:    4 DLGEHCSKPGCHQNDFLPFACDCCAGVFCLEHRTYDAHSCPNAGRKDSRAITCPLCRATIPLTNDQDVNVIFEQHTRAGNCNPESYNDRKKAKARCEAENCREILTASNTMQCPTCRKKVCLRHRFETDHQC 135          
BLAST of NO16G00660 vs. NCBI_GenBank
Match: XP_009821949.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV89549.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 148.3 bits (373), Expect = 4.600e-32
Identity = 65/132 (49.24%), Postives = 85/132 (64.39%), Query Frame = 0
Query:   30 DLGAHCSVGFCNLRDFLPFHCDCCKRTFCLEHRTYAAHSCPHQGQKQQIAIKCPVCALTLTLTAAQDPNLVWQLHSSSAECKPA----QKTKRERCGVKGCKEVMGPSNTHVCGACRKEVCLRHRYKDHHAC 158
            DLG HCS   C+  DFLPF CDCC   FCLEHRTY AHSCP+ G+K   AI CP+C  T+ LT  QD N++++ H+ +  C P     +K  + RC  + C+E++  SNT  C  CRK+VCLRHR++  H C
Sbjct:    4 DLGEHCSKPGCHQNDFLPFACDCCAGVFCLEHRTYDAHSCPNAGRKDSRAITCPLCRATIPLTNDQDVNVIFEQHTRAGNCNPESYNDRKKAKARCEAENCREILTASNTMQCPTCRKKVCLRHRFETDHQC 135          
BLAST of NO16G00660 vs. NCBI_GenBank
Match: CBJ32580.1 (AN1 and C2H2 zinc finger protein [Ectocarpus siliculosus])

HSP 1 Score: 147.9 bits (372), Expect = 6.000e-32
Identity = 68/148 (45.95%), Postives = 86/148 (58.11%), Query Frame = 0
Query:   27 EFQDLGAHCSVGFCNLRDFLPFHCDCCKRTFCLEHRTYAAHSCPHQGQKQQIAIKCPVCALTLTLTAAQDPNLVWQLHSSSAECKPAQ----KTKRERCGVKGCKEVMGPSNTHVCGACRKEVCLRHRYKDHHACTGAVKQGRGGMRG 171
            EF  +G HC    CN +DFLPF CDCC  TFCL HR+YAAHSC   G K   A+ CP+C  T+     QDPN  W LH+ + +C P      K  ++RC    C+ V+GP+NT  C +C KE CL HR+ D H C+ +    RG  RG
Sbjct:    3 EFTGVGKHCGAENCNQQDFLPFECDCCNGTFCLSHRSYAAHSCAASGNKDFRALVCPLCKKTVRFNGGQDPNQQWDLHTRT-DCNPEDYKRAKQTKKRCAAASCRVVLGPTNTQRCASCGKETCLTHRFPDSHNCSAS---SRGDARG 146          
BLAST of NO16G00660 vs. NCBI_GenBank
Match: OQR90874.1 (hypothetical protein THRCLA_09176 [Thraustotheca clavata])

HSP 1 Score: 146.7 bits (369), Expect = 1.300e-31
Identity = 66/140 (47.14%), Postives = 85/140 (60.71%), Query Frame = 0
Query:   30 DLGAHCSVGFCNLRDFLPFHCDCCKRTFCLEHRTYAAHSCPHQGQKQQIAIKCPVCALTLTLTAAQDPNLVWQLHSSSAECKPAQ----KTKRERCGVKGCKEVMGPSNTHVCGACRKEVCLRHRYKDHHACTGAVKQGR 166
            D+G HCS   CN +DFLPF CDCC   FCLEHRTY  H C H G K   AI CP+C  T+ LT   D N+VW+ H+ + +CKP +    K  + RC  + C+E++  SN+ VC  C K+VCLRHR++  H CT      R
Sbjct:    2 DIGKHCSKPGCNQQDFLPFECDCCHGVFCLEHRTYEDHECVHAGAKDSRAITCPLCRGTIPLTGNMDVNIVWENHARN-DCKPEKYQENKKAKVRCAAETCREILTASNSVVCSTCHKKVCLRHRFETDHQCTRRAPSSR 140          
BLAST of NO16G00660 vs. NCBI_GenBank
Match: XP_008614027.1 (hypothetical protein SDRG_09852 [Saprolegnia diclina VS20] >EQC32526.1 hypothetical protein SDRG_09852 [Saprolegnia diclina VS20])

HSP 1 Score: 146.0 bits (367), Expect = 2.300e-31
Identity = 67/132 (50.76%), Postives = 83/132 (62.88%), Query Frame = 0
Query:   30 DLGAHCSVGFCNLRDFLPFHCDCCKRTFCLEHRTYAAHSCPHQGQKQQIAIKCPVCALTLTLTAAQDPNLVWQLHSSSAECKP----AQKTKRERCGVKGCKEVMGPSNTHVCGACRKEVCLRHRYKDHHAC 158
            D+G HCS   CN +DFLPF CDCC   FCLEHRTY AH+C   G K   AI CP+C  T+ LT A D + VW  H+ +  C P     +K  +ERC   GC+EV+  SNT  C +CRK+VCLRHR++  H C
Sbjct:   18 DVGEHCSNPGCNQKDFLPFACDCCNGIFCLEHRTYDAHACAQAGAKDARAITCPLCRATIPLTGAMDVDEVWAAHART-NCSPDKYEEKKKPKERCAADGCREVLTASNTVQCNSCRKKVCLRHRFETDHQC 148          
BLAST of NO16G00660 vs. NCBI_GenBank
Match: XP_010937215.1 (PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Elaeis guineensis] >XP_010937225.1 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Elaeis guineensis] >XP_010937234.1 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Elaeis guineensis] >XP_010937242.1 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Elaeis guineensis])

HSP 1 Score: 142.1 bits (357), Expect = 3.300e-30
Identity = 66/143 (46.15%), Postives = 87/143 (60.84%), Query Frame = 0
Query:   27 EFQDLGAHCSVGFCNLRDFLPFHCDCCKRTFCLEHRTYAAHSCPHQGQKQQIAIKCPVCALTLTLTAAQDPNLVWQLHSSSAECKPA---QKTKRERCGVKGCKEVMGPSNTHVCGACRKEVCLRHRYKDHHACTGAVKQGRG 167
            EF DLG HC+V  C   DFLPF CD C + FCLEHR+Y  H CP+  Q+    + CP+CA  + L   +DPN+ W+ H  + +C P+   + TK++RC V GCKE++  SNT  C  C KE CL+HR+   H C G  KQ  G
Sbjct:    5 EFPDLGKHCNVDDCRQIDFLPFTCDRCNKVFCLEHRSYTKHLCPNANQQDVTVLVCPLCAKGVRLVPNEDPNITWESH-VNCDCDPSNYQKATKKKRCPVPGCKELLTFSNTLRCRDCTKEHCLKHRFGPDHKCPGPKKQDSG 146          
BLAST of NO16G00660 vs. NCBI_GenBank
Match: XP_002460884.1 (zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Sorghum bicolor])

HSP 1 Score: 141.7 bits (356), Expect = 4.300e-30
Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 0
Query:   27 EFQDLGAHCSVGFCNLRDFLPFHCDCCKRTFCLEHRTYAAHSCPHQGQKQQIAIKCPVCALTLTLTAAQDPNLVWQLHSSSAECKPA---QKTKRERCGVKGCKEVMGPSNTHVCGACRKEVCLRHRYKDHHACTGAVKQGRG 167
            EF DLG HCSVG CN  DFLPF CD C   FCL+HR+Y +H CP+   K    + CP+CA  + L  ++DPN+ W  H ++ +C P+   + TK+++C V GC+E +  SNT  C  C KE CL+HR+   H C G  K   G
Sbjct:   66 EFPDLGKHCSVGDCNQIDFLPFTCDRCDHVFCLQHRSYTSHQCPNANMKDVTVLICPLCAKGVRLNPSEDPNITWDTHVNT-DCDPSNYQKVTKKKKCPVPGCRETLTFSNTIRCKDCTKEHCLKHRFGPDHKCPGPRKVDSG 207          
BLAST of NO16G00660 vs. NCBI_GenBank
Match: XP_015644892.1 (PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Oryza sativa Japonica Group] >Q0D5B9.2 RecName: Full=Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16; Short=OsSAP16 >BAC79697.1 putative arsenite inducible RNA associated protein [Oryza sativa Japonica Group] >EEC82292.1 hypothetical protein OsI_26540 [Oryza sativa Indica Group] >EEE67439.1 hypothetical protein OsJ_24803 [Oryza sativa Japonica Group] >AEP20538.1 zinc finger AN1 and C2H2 domain-containing protein [Oryza sativa Japonica Group])

HSP 1 Score: 141.7 bits (356), Expect = 4.300e-30
Identity = 65/139 (46.76%), Postives = 86/139 (61.87%), Query Frame = 0
Query:   27 EFQDLGAHCSVGFCNLRDFLPFHCDCCKRTFCLEHRTYAAHSCPHQGQKQQIAIKCPVCALTLTLTAAQDPNLVWQLHSSSAECKPA---QKTKRERCGVKGCKEVMGPSNTHVCGACRKEVCLRHRYKDHHACTGAVK 163
            EF +LG HCSVG CN  DFLPF CD C   FCL+HR+Y +H CP+  QK    + CP+CA  + L   +DPN+ W  H +S +C P+   + TK+++C V GC+E +  SNT  C  C KE CL+HR+   H C G  K
Sbjct:    5 EFPNLGKHCSVGDCNQIDFLPFTCDRCDHVFCLQHRSYTSHQCPNANQKDVTVLICPLCAKGVRLNPNEDPNITWDTHVNS-DCDPSNYQKVTKKKKCPVPGCRETLTFSNTIRCKDCTKEHCLKHRFGPDHKCPGPRK 142          
BLAST of NO16G00660 vs. NCBI_GenBank
Match: OQU90125.1 (hypothetical protein SORBI_3002G345300 [Sorghum bicolor])

HSP 1 Score: 141.7 bits (356), Expect = 4.300e-30
Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 0
Query:   27 EFQDLGAHCSVGFCNLRDFLPFHCDCCKRTFCLEHRTYAAHSCPHQGQKQQIAIKCPVCALTLTLTAAQDPNLVWQLHSSSAECKPA---QKTKRERCGVKGCKEVMGPSNTHVCGACRKEVCLRHRYKDHHACTGAVKQGRG 167
            EF DLG HCSVG CN  DFLPF CD C   FCL+HR+Y +H CP+   K    + CP+CA  + L  ++DPN+ W  H ++ +C P+   + TK+++C V GC+E +  SNT  C  C KE CL+HR+   H C G  K   G
Sbjct:    5 EFPDLGKHCSVGDCNQIDFLPFTCDRCDHVFCLQHRSYTSHQCPNANMKDVTVLICPLCAKGVRLNPSEDPNITWDTHVNT-DCDPSNYQKVTKKKKCPVPGCRETLTFSNTIRCKDCTKEHCLKHRFGPDHKCPGPRKVDSG 146          
The following BLAST results are available for this feature:
BLAST of NO16G00660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24053.18.900e-6853.31arsenite inducuble rna associated protein aip [Nan... [more]
XP_009821948.14.600e-3249.24hypothetical protein H257_00785 [Aphanomyces astac... [more]
XP_009821949.14.600e-3249.24hypothetical protein, variant [Aphanomyces astaci]... [more]
CBJ32580.16.000e-3245.95AN1 and C2H2 zinc finger protein [Ectocarpus silic... [more]
OQR90874.11.300e-3147.14hypothetical protein THRCLA_09176 [Thraustotheca c... [more]
XP_008614027.12.300e-3150.76hypothetical protein SDRG_09852 [Saprolegnia dicli... [more]
XP_010937215.13.300e-3046.15PREDICTED: zinc finger AN1 and C2H2 domain-contain... [more]
XP_002460884.14.300e-3045.45zinc finger AN1 and C2H2 domain-containing stress-... [more]
XP_015644892.14.300e-3046.76PREDICTED: zinc finger AN1 and C2H2 domain-contain... [more]
OQU90125.14.300e-3045.45hypothetical protein SORBI_3002G345300 [Sorghum bi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003053NSK003053Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00660.1NO16G00660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100063g18gene6409Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00660.1NO16G00660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00660 ID=NO16G00660|Name=NO16G00660|organism=Nannochloropsis oceanica|type=gene|length=1908bp
ATGTCAGGCTTAGATGGTCATACTACAGGATGTAATTGGTACTTTGGTGT
GGGACCGGTACTCCCGgtaagccatagtcatacaggtacaagctacatgc
tgcgacataggacgaacacaagatgatagttttgtatgatttaatatgac
ccctgtctaagaagagaaactctctccttacacactattattgagaacaa
atttgcttactttatgggtctccctcatgttccctgcctgctgctgctct
ccatatcgtaacgagaaacactcaagcgagcaaatttctgagtgctccgt
tgccttacacattaaacccaaccccacctcaccccctttccccacagCAC
GCTAGTATGGAGTTTCAAGATCTGGGTGCACACTGCAGTGTGGGGTTCTG
CAATCTTCGTGACTTCCTGCCTTTTCACTGCGgtatgtgcttccccttct
tccccccatcccctccctgtcctgcccccgctgtgtgtgccctgcacggt
cgctatgtcatgatgcaagcccaggcgacgtttcgttgcgtcgagcgaga
acgtaatgttgagcctagagtgctctgcgtctttcgaggcctgtgatgga
ccgcgggccgatgcgttgcctcctcccaccctccctccctccatttacgc
gccggacggcgatggctcttgcttacgccatgctccctagccatgacagt
gggccggcgacaaacgcaccgacaggagcgcagcaatggatggtctgtgt
ttatctcccgatgtattttctgggcttgcccggtcaagctgtcactttta
gcgtaagcaatgccgtcatccatctcttcttaagctccacgcttgcattt
tccccttgtcttgtccccttgcatctctctccatcatcgcttctcacaag
catgctatcaatctatgccatttatttacccaccctcctttcttgccgtc
ccttaaccaccttacctcaaaccaaacagACTGCTGCAAGCGAACCTTTT
GCCTCGAACACCGCACCTACGCCGCCCACAGCTGTCCACATCAAGGGCAA
AAACAACAAATAGCGATCAAGTGCCCCGTCTGTGCGCTCACTCTCACCCT
GACAGCTGCACAAGACCCCAACCTCGTCTGGCAGCTCCATTCGAGCTCTG
CTGAATGCAAACCTGCGCAGAAAACGAAGCGAGAACGATGCGGAGTGAAG
GGCTGCAAGGAAGTGATGGGCCCGAGTAATACCCATGTATGTGGCGCCTG
TAGAAAGGAAGTCTGTCTTAGGCATCGGTACAAAGACCACCATGCTTGCA
CGGGAGCAGTCAAGCAGGGAAGGGGGGGAATGAGGGGCGTTGCTTCTTGG
TTTGGTGGTGGTGGCGGAGGAATGGGGGGTGGCAGCAGTAACATCGGCAA
GGGAAAGCCGACCACGCCTGTACGAGCAGCTGCAGCAGCGGGGGGGAGGG
GGCGGGGGGGAGGCAGTGTGGCGAACGGTAAGGGCAGCAGTAGCAGCAGC
AGCAGCAGCAGCAGCAGTAATGGCCATCATGCGCGGCGAGGGAGTAGGGG
CAGCAACAGGCCGACACCTGATCCAAGCAATTCATTGCAAGGAACGACGG
AACGACGCCGACGGGGAAGGGTAGTAGGAGCAGGGGGGGCTTATCCAGGG
CAAGCGGGACATAAAAACAAAAACAACAGCAATGACGTGGATTTGACCAA
CGACGACGGCAGTAGTAGCAGCAGTACCCCCCCCTCCATCCGGCCCTCCC
AGGCGGGGCAGACGGCGGATGGTGGGTGTCCATTCTGTCGGGCCTCGTTT
GTGGACCCCGTACTGCTGGTTGAACACGTGGAGAGAGAGCATGGAGAGGA
CGGGCGGAGGGAAGTGGGAGGAGGGGAGGGAGGAGGGATAGGGTGCCAGG
TGGCTTGA
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protein sequence of NO16G00660.1

>NO16G00660.1-protein ID=NO16G00660.1-protein|Name=NO16G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MSGLDGHTTGCNWYFGVGPVLPHASMEFQDLGAHCSVGFCNLRDFLPFHC
DCCKRTFCLEHRTYAAHSCPHQGQKQQIAIKCPVCALTLTLTAAQDPNLV
WQLHSSSAECKPAQKTKRERCGVKGCKEVMGPSNTHVCGACRKEVCLRHR
YKDHHACTGAVKQGRGGMRGVASWFGGGGGGMGGGSSNIGKGKPTTPVRA
AAAAGGRGRGGGSVANGKGSSSSSSSSSSSNGHHARRGSRGSNRPTPDPS
NSLQGTTERRRRGRVVGAGGAYPGQAGHKNKNNSNDVDLTNDDGSSSSST
PPSIRPSQAGQTADGGCPFCRASFVDPVLLVEHVEREHGEDGRREVGGGE
GGGIGCQVA*
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Synonyms
Publications