NO16G00560, NO16G00560 (gene) Nannochloropsis oceanica

Overview
NameNO16G00560
Unique NameNO16G00560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2730
Alignment locationchr16:196548..199277 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:196548..199277 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G00560 vs. NCBI_GenBank
Match: EWM24056.1 (hypothetical protein Naga_100063g10 [Nannochloropsis gaditana])

HSP 1 Score: 537.3 bits (1383), Expect = 5.800e-149
Identity = 269/385 (69.87%), Postives = 320/385 (83.12%), Query Frame = 0 
Query:  213 QNSGLMPTNSINSVKNANPELATMLSALTAGAGISQSMTQCYGSIEGDEDAIQSSLVSLGTSMVNSDSITAAAGVGKALITAAPGATASEKDAMYNLFRIYLDQNANAGKALTTTQQKAYSSLTPECNAAFDEIVTTYQNSKGTVSSLMAGGKSNVTCSNFQDNTTFVDMTLCVWPSAVWSHKEKGIMANITATFTNYGVGLCDVSFYIINLAENIGLKPTWLPDSKKAFPDGIPQGTEIEIQAVVPWTNEIAENKPVVDILKGWSACPNGRATPAPTAARTAEPKIDTEVINSAAACFITDACKTAVTPFKDDQCGAYTQLLTSGCSTCSDEVLMSATKSCLASCQANACGAMA---QVTSGAGALSKAVAFVVTLVTAFAFVL 595
            + +G++PTNSI+  K ANPEL  +++ L + A I+ SM+QCY SIEGDEDAI  SL+SLGTSMV+SDSITAA+ VGKALI A+P A+ S+K+AMY LFRIYLDQNAN GKALTT Q+KAYSSLT ECNAAFD++VTTYQ+SKGT+SS+MAGG SNVTC+NFQDN+T VDMTLCVWP+A+W+  +K +MAN++ATFTNYGVGLCDV FYIINLA+ +GLKP WLPD+K+AFP GIPQG EI I+A VPWTNEIAENKPVVDILKGWSACPNG ATP P    T +PK+D  V++SA+ACFIT AC  A+ PF DD CGAY+QLLTSGCSTCS E+L +A KSCL +C +  CG  +   + TSGAGALSKAVAFVVTL  AFAF L
Sbjct:  213 KQAGVIPTNSIDRAKAANPELGALINGLQSTASIANSMSQCYASIEGDEDAISKSLLSLGTSMVSSDSITAASEVGKALIMASPAASTSQKNAMYQLFRIYLDQNANTGKALTTAQEKAYSSLTTECNAAFDDVVTTYQDSKGTISSIMAGGNSNVTCANFQDNSTSVDMTLCVWPTAIWTLGDK-MMANVSATFTNYGVGLCDVKFYIINLADAVGLKPAWLPDAKEAFPQGIPQGAEIAIEAAVPWTNEIAENKPVVDILKGWSACPNGPATPPPVVQPTTKPKVDNGVLSSASACFITPACTAAIAPFGDDSCGAYSQLLTSGCSTCSTEILEAAGKSCLTTCSSQYCGTASDKEEATSGAGALSKAVAFVVTLTAAFAFAL 596
The following BLAST results are available for this feature:
BLAST of NO16G00560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24056.15.800e-14969.87hypothetical protein Naga_100063g10 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003044NSK003044Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00560.1NO16G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593186gene_5932Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100063g10gene6400Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00560.1NO16G00560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00560 ID=NO16G00560|Name=NO16G00560|organism=Nannochloropsis oceanica|type=gene|length=2730bp
CTTGGTTTTGCACATGACGTGCTCCACTGCAGGTCTCTCGTCCTCCTCGT
CTTGTTCCCTTGCCTGATTTTTTACCCTTCCTCCTTAATATATGGATGTG
GACTTTTTTCTTGTGGTATGTTCCAGTCTTGTGAGCTTGATTGTTGTGCG
CGCACACATGACATGAAGCTGGTCCTCGCCCGCAGCGCGCTCCACACGAT
CTTACATATCGTCCCACTTTACGTTGAGCTGGACGATCTAAATGGCTTGG
GGATTTTGTATTCATGAAGAAGGCGCTCAGTCTCCGCATTCCTGTTTTTT
GTCCGCGGTCCATCTCCCTAATCCGCGTACCATATGCATACACACTTGTA
CGCCGTCGCAAATTTTATCCCAGCCAGTCTGTACACGCAATCACTCGAGC
TCCCTGTCCTGCTCCCCAACCTTACATATGCACAGGCTTTGTCCTCTACT
TCCTTCCACTGACACAGATTACAACCTATATTAACCAACTATGCGTGTCT
TCCGCCTGGTCCTCACCGTGGCCCTGGCCGCCGCTGTCTTTGCCAATGAG
GCCGTCACCACCGAGACCGACACCGAACTTGCCACCGTGCAGGGCTCTGT
AGACGGAGCGGTTGAGGTTACGCCAGATGCTCCCGTCACCGAGACTGACG
CCGAACTTGCCACCGTGCAGGACAATGTAGATGAGACGATTGAGGTTACG
CCGGAAGCCCCCGTCTCCGAGACCAACGCCGAGCTTGCGGTCGTGCAGGG
CACAGAAGATGAGGCGATTGAGATTACACCGGAAGAAGCTCAAACTGCTG
AGGCCGACGCTGAACTTGCTGCCGTGCAGGGCACTGTAGATGAGGCGGTT
GACGTCACGCCTGAAGCTGCCAACGCCACCGATGCCGACATGGATGAAAT
CAAGAGCAAGGCCGCGGATGCCCTGAAGCGGGCGGCCGACTCCGAGATCG
CTAAGGACAACAATgtaagcattctgtgagaaaggcagatgcagagcgac
aaagggaaaagaggagtacgattacaagtctctgtatgcccgcgagtttt
cacccacctgcccttttctcacaccacccacccattctatagATGTCAGG
CGCCCTCGACGGTGCCGCCAATAAGATCGGTACAGCCGGGACCAACACCG
GCAGCACCAGCAGCGCCAGCAGCGCCGCCAGCTCTGCCAAAACCTTACCC
CAGATACTCCAGAACTCGAACAACCCGAACGTGGCGAGCATTGGTAATTT
GGCGCAGAACTCCGGCTTGATGCCCACCAACAGCATCAATTCGGTCAAGA
ACGCCAATCCCGAGCTGGCCACGATGCTAAGTGCCCTGACCGCCGGTGCG
GGCATTAGCCAGTCCATGACTCAGTGCTACGGCTCTATCGAAGGGGATGA
GGATGCCATCCAGTCGTCGCTTGTCTCTTTAGGAACCAGCATGGTCAACT
CTGACTCGATCACGGCCGCCGCTGGAGTGGGTAAGGCGCTGATTACTGCC
GCACCCGGCGCTACTGCGAGCGAGAAGGACGCCATGTACAATCTGTTCCG
CATTTACCTCGACCAGAACGCCAACGCTGGCAAGGCGCTAACCACCACCC
AACAGAAGGCTTACAGCTCTTTGACCCCTGAGTGTAATGCTGCCTTTGAT
GAAATCGTCACCACGTACCAGAACAGCAAGGGCACCGTCAGCTCCCTCAT
GGCGGGGGGTAAGAGCAACGTGACCTGCTCCAACTTCCAGGACAACACCA
CCTTTGTCGACATGACTCTCTGTGTCTGGCCCTCCGCCGTCTGGTCGCAC
AAGGAGAAGGGCATCATGGCCAATATCACTGCCACCTTCACCAATTACGG
GGTGGGCCTCTGCGACGTTTCGTTCTACATCATCAACCTCGCGGAAAACA
TCGGTCTTAAGCCCACCTGGCTGCCCGATTCCAAGAAGGCTTTCCCCGAC
GGCATTCCCCAGGGGACCGAGATCGAGATCCAGGCCGTCGTCCCCTGGAC
GAATGAAATCGCCGAGAACAAGCCTGTGGTAGATATCCTTAAGGGATGGT
CTGCCTGCCCCAACGGTCGCGCCACCCCTGCTCCTACCGCGGCTCGCACT
GCAGAGCCCAAGATTGACACCGAAGTAATCAACTCGGCCGCGGCGTGCTT
TATCACGGACGCCTGCAAGACCGCCGTGACCCCCTTTAAAGACGACCAGT
GCGGGGCCTACACCCAACTGCTGACCTCCGGCTGCTCCACGTGCTCTGAT
GAGGTGCTTATGTCTGCGACAAAGTCCTGCTTGGCGTCCTGCCAGGCTAA
TGCTTGCGGGGCCATGGCTCAGGTCACGAGCGGGGCCGGCGCGCTTTCCA
AGGCTGTGGCCTTCGTGGTCACCCTCGTTACTGCCTTTGCCTTTGTCCTT
TAAGTGACGAGAAGCAATTGCTTTTTAGGGGAAGGAGGAGGAGAAGGATA
GAAGGAGAGAGTTATTGTATCATATGCGTGTAAGTGTGTGATGTTTGTAG
TGGCTTTGTGTGAGACATCGGATAATGGAAGGAGAAAAGAGGATGGGCGC
GCATGATTGTCGGTTAGATCGCTGCCATTCTTAATTTAAAACTTCTCTTC
TTCCTCTTCTTCTTCTTTTAGGTGCAAGGGGGGGAATCAGGTTTATACAT
GTCGTACATATTTATTGAACGAGGATGTAGAATGAACGAGGGGGAGAGAG
AGGTTTTGTTTTTGTTTGGGGGGGGGGAGG
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protein sequence of NO16G00560.1

>NO16G00560.1-protein ID=NO16G00560.1-protein|Name=NO16G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=595bp
MRVFRLVLTVALAAAVFANEAVTTETDTELATVQGSVDGAVEVTPDAPVT
ETDAELATVQDNVDETIEVTPEAPVSETNAELAVVQGTEDEAIEITPEEA
QTAEADAELAAVQGTVDEAVDVTPEAANATDADMDEIKSKAADALKRAAD
SEIAKDNNMSGALDGAANKIGTAGTNTGSTSSASSAASSAKTLPQILQNS
NNPNVASIGNLAQNSGLMPTNSINSVKNANPELATMLSALTAGAGISQSM
TQCYGSIEGDEDAIQSSLVSLGTSMVNSDSITAAAGVGKALITAAPGATA
SEKDAMYNLFRIYLDQNANAGKALTTTQQKAYSSLTPECNAAFDEIVTTY
QNSKGTVSSLMAGGKSNVTCSNFQDNTTFVDMTLCVWPSAVWSHKEKGIM
ANITATFTNYGVGLCDVSFYIINLAENIGLKPTWLPDSKKAFPDGIPQGT
EIEIQAVVPWTNEIAENKPVVDILKGWSACPNGRATPAPTAARTAEPKID
TEVINSAAACFITDACKTAVTPFKDDQCGAYTQLLTSGCSTCSDEVLMSA
TKSCLASCQANACGAMAQVTSGAGALSKAVAFVVTLVTAFAFVL*
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Synonyms
Publications