NO16G00490, NO16G00490 (gene) Nannochloropsis oceanica

Overview
NameNO16G00490
Unique NameNO16G00490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1219
Alignment locationchr16:173108..174326 +

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Properties
Property NameValue
DescriptionRibulose--bisphosphate carboxylase oxygenase small subunit n-methyltransferase i
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:173108..174326 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036464Rubisco_LSMT_subst-bd_sf
IPR015353Rubisco_LSMT_subst-bd
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Homology
[Close]
BLAST of NO16G00490 vs. NCBI_GenBank
Match: EWM24078.1 (ribulose- -bisphosphate carboxylase oxygenase small subunit n-methyltransferase i [Nannochloropsis gaditana])

HSP 1 Score: 372.5 bits (955), Expect = 8.900e-100
Identity = 185/210 (88.10%), Postives = 200/210 (95.24%), Query Frame = 0 
Query:    1 MFNPIRGEEVITIYADKDYRKMEQVYISYGPKSNADLLLLYGFCLDRNPYNSVEITVSLLEQDPLFDDKRVFLSQVDRREKEAFPLFADRYPNELFEYLRLVYLTPEDIQGKKLSDMDFTDPISLENELAAMASIESACEDALASYSTKEEDDARLINDGKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQLLNLKSGKRKLRPEEE 211
            MFNPIRGEEVITIYADKDY+KMEQVYISYGPKSNADLLLLYGFCLDRNP+NSV++TV+LL  DPLF++KR FL+Q +RREKEAFPLFADRYPNELFEYLRLVYLT ED+ G+ L +M+FTDPISLENELAAMASIE ACE+ALASYSTKEEDDARLIND KLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQLLNL+SGKRKLRPEEE
Sbjct:  438 MFNPIRGEEVITIYADKDYKKMEQVYISYGPKSNADLLLLYGFCLDRNPFNSVDLTVALLPDDPLFEEKRAFLAQAERREKEAFPLFADRYPNELFEYLRLVYLTKEDMGGRALREMEFTDPISLENELAAMASIEGACEEALASYSTKEEDDARLINDSKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQLLNLRSGKRKLRPEEE 647
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BLAST of NO16G00490 vs. NCBI_GenBank
Match: EJK62256.1 (hypothetical protein THAOC_17139 [Thalassiosira oceanica])

HSP 1 Score: 207.6 bits (527), Expect = 3.800e-50
Identity = 106/204 (51.96%), Postives = 143/204 (70.10%), Query Frame = 0 
Query:    7 GEEVITIYADKDYRKMEQVYISYGPKSNADLLLLYGFCLDRNPYNSVEITVSL-------------LEQDPLFDDKRVFLSQVDRREKEAFPLFADRYPNELFEYLRLVYLTPEDIQGKKLSDMDFTDPISLENELAAMASIESACEDALASYSTKEEDDARLINDGKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQLLN 198
            GEE + +YAD+ YR+MEQVYISYG KSNA+LLLLYGF L+RNPYNSV++TVS+             +E+DPL D+K  FL  V R +   FP +ADRYP E+ EYLRL+ +TPED +GK LSD D++  IS  NE + + S+ +A +  L  +   EEDDA +I D  +F +F   QRMA++HRR+EKRLLK+T AA+++Q+ N
Sbjct:  400 GEEEVILYADRGYRQMEQVYISYGQKSNAELLLLYGFALERNPYNSVDVTVSIAPRTKQIAEANEGVEEDPLADEKLEFLLSVGRDQTVDFPCYADRYPVEMLEYLRLMMMTPEDTRGKPLSDFDYSRTISSANEASVLRSVVAAVKYQLGLFPQTEEDDAAIIKDKGMFRLFSYNQRMAVRHRRNEKRLLKRTLAALEKQIRN 603
[Close]
BLAST of NO16G00490 vs. NCBI_GenBank
Match: XP_002185762.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Phaeodactylum tricornutum CCAP 1055/1] >ACI65232.1 ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 206.8 bits (525), Expect = 6.400e-50
Identity = 104/204 (50.98%), Postives = 142/204 (69.61%), Query Frame = 0 
Query:    7 GEEVITIYADKDYRKMEQVYISYGPKSNADLLLLYGFCLDRNPYNSVEITVSL---------------LEQDPLFDDKRVFLSQVDRREKEAFPLFADRYPNELFEYLRLVYLTPEDIQGKKLSDMDFTDPISLENELAAMASIESACEDALASYSTKEEDDARLINDGKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQL 196
            G+E + +YAD+ YR+MEQ+YISYGPKSNA+LLLLYGF ++RNP+NSV++TVS+               +  DPL ++K  FL QV R     FP +ADRYP E+ EYLRL+ +TPED +GK L++ D++  ISL NE A + S+ +A    L++Y   EEDDA LI D  LF +    QRMA++HRR+EKRLLK+T AA+++QL
Sbjct:  321 GDEEVILYADRGYRRMEQIYISYGPKSNAELLLLYGFAVERNPFNSVDVTVSIAPRTASFVKELDDDTIPVDPLAEEKAAFLEQVGRDATVDFPCYADRYPVEMLEYLRLMQMTPEDTRGKPLAEFDYSRTISLGNEAAVLTSVITAVSRQLSNYPQSEEDDAALIKDKSLFRLLSYNQRMAVRHRRNEKRLLKRTIAALEKQL 524
[Close]
BLAST of NO16G00490 vs. NCBI_GenBank
Match: CBJ29688.1 (putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Ectocarpus siliculosus])

HSP 1 Score: 202.2 bits (513), Expect = 1.600e-48
Identity = 98/189 (51.85%), Postives = 134/189 (70.90%), Query Frame = 0 
Query:   11 ITIYADKDYRKMEQVYISYGPKSNADLLLLYGFCLDRNPYNSVEITVSLLEQDPLFDDKRVFLSQVDRREKEAFPLFADRYPNELFEYLRLVYLTPEDIQGKKLSDMDFTDPISLENELAAMASIESACEDALASYSTKEEDDARLINDGKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQLLNLK 200
            + +YAD+ Y+KMEQVYISYGPK N+DLLLLYGF LDRNPYNSV++TVSL E D L++ K+ FLS+      +AFPL+ DRYP+EL +YLRL+ L  + ++G+ L D+ F    +  NEL  + S+  AC+  +A Y T EE D++L+ND  +F    KTQRMA+KHRR EK +L++T AAV +    L+
Sbjct:  325 VVVYADRSYKKMEQVYISYGPKGNSDLLLLYGFSLDRNPYNSVDVTVSLDENDELYERKKAFLSEAGLPPTKAFPLYNDRYPDELLQYLRLIQLNTDQLRGRTLEDLSFEKKQTDVNELMVLDSLVEACKATIAGYPTTEEQDSKLMNDPGMFRALSKTQRMAVKHRRQEKVILRRTIAAVTKDKEKLR 513
[Close]
BLAST of NO16G00490 vs. NCBI_GenBank
Match: OEU18174.1 (ribulose-1,5-bisphosphate caboxylase, small subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 196.8 bits (499), Expect = 6.700e-47
Identity = 100/204 (49.02%), Postives = 137/204 (67.16%), Query Frame = 0 
Query:    7 GEEVITIYADKDYRKMEQVYISYGPKSNADLLLLYGFCLDRNPYNSVEITVSL---------------LEQDPLFDDKRVFLSQVDRREKEAFPLFADRYPNELFEYLRLVYLTPEDIQGKKLSDMDFTDPISLENELAAMASIESACEDALASYSTKEEDDARLINDGKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQL 196
            GEE + +YAD+ YR+MEQ+YISYG KSNA+LLLLYGF ++RNPYNSV++TV++               +  DPL ++K  FL+ V R     FP +ADRYP EL E+LRL+ +TP+D +GK L+D D++  IS  NE A ++S+  A    +  Y   EEDDA LI D  +F +    QRMAI+HRR+EKRLLK+T AA++ Q+
Sbjct:  332 GEEEVILYADRGYRRMEQIYISYGQKSNAELLLLYGFAVERNPYNSVDVTVAIAPLTESFVKELNDDTIPVDPLAEEKVTFLASVGRESLVDFPCYADRYPVELLEFLRLMQMTPDDTRGKPLNDFDYSRTISAANEAAVLSSVIEAVTRQIDKYPNTEEDDAALIKDKGMFRLLSYNQRMAIRHRRNEKRLLKRTIAALENQM 535
[Close]
BLAST of NO16G00490 vs. NCBI_GenBank
Match: XP_002286075.1 (rubisco small subunit small subunit n-methyltransferase, partial [Thalassiosira pseudonana CCMP1335] >EED95716.1 rubisco small subunit small subunit n-methyltransferase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 196.1 bits (497), Expect = 1.100e-46
Identity = 101/194 (52.06%), Postives = 133/194 (68.56%), Query Frame = 0 
Query:    7 GEEVITIYADKDYRKMEQVYISYGPKSNADLLLLYGFCLDRNPYNSVEITVSL-------------LEQDPLFDDKRVFLSQVDRREKEAFPLFADRYPNELFEYLRLVYLTPEDIQGKKLSDMDFTDPISLENELAAMASIESACEDALASYSTKEEDDARLINDGKLFNMFPKTQRMAIKHRRSEKRLLKKT 188
            GEE + +YAD+ YR+MEQVYISYG KSNA+LLLLYGF L+RNPYNSV++TVS+             +E DPL  +K  FL+ V R +   FP +ADRYP E+ E+LRL+ +TPED +GK L+D D++  IS  NE A ++S+  A +  L  Y   EEDDA +I D  LF +    QRMA++HRR+EKRLLK+T
Sbjct:  240 GEEEVILYADRGYRQMEQVYISYGQKSNAELLLLYGFALERNPYNSVDVTVSIAPRTAALAAANEGIEVDPLAQEKVEFLASVGRDQTVDFPCYADRYPVEMLEFLRLMMMTPEDTRGKPLADFDYSRTISPANEAAVLSSVVEAVKYQLNLYPQSEEDDANIIKDKALFRLLSYNQRMAVRHRRNEKRLLKRT 433
[Close]
BLAST of NO16G00490 vs. NCBI_GenBank
Match: GAX18704.1 (hypothetical protein FisN_10Hh082 [Fistulifera solaris])

HSP 1 Score: 194.9 bits (494), Expect = 2.500e-46
Identity = 99/205 (48.29%), Postives = 136/205 (66.34%), Query Frame = 0 
Query:    7 GEEVITIYADKDYRKMEQVYISYGPKSNADLLLLYGFCLDRNPYNSVEITVSL---------------LEQDPLFDDKRVFLSQVDRREKEAFPLFADRYPNELFEYLRLVYLTPEDIQGKKLSDMDFTDPISLENELAAMASIESACEDALASYSTKEEDDARLINDGKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQLL 197
            G+E + +YAD+ YR+MEQ+YISYGPKSNA+LLLLYGF ++RNP+NSV++TVS+               +  DPL ++K  FL  V R     FP +ADRYP E+ EYLRL+ +TP+D +GK L+  D++  IS  NE A + S+  A    L  Y   EE+D  LI D  LF +    QRMAI+HRR+EKRLLK+T AA+++Q++
Sbjct:  290 GDEEVILYADRGYRRMEQIYISYGPKSNAELLLLYGFAVERNPFNSVDVTVSIAPRTASFIKELNDENIPVDPLAEEKLQFLESVGRANTVDFPCYADRYPTEMLEYLRLMQMTPDDTRGKPLNAFDYSRTISPGNEAAVLTSVIEAVTRQLGKYPQTEEEDNALIKDKSLFRLLSYNQRMAIRHRRNEKRLLKRTIAALEKQII 494
[Close]
BLAST of NO16G00490 vs. NCBI_GenBank
Match: GAX17228.1 (hypothetical protein FisN_10Lh082 [Fistulifera solaris])

HSP 1 Score: 194.5 bits (493), Expect = 3.300e-46
Identity = 99/205 (48.29%), Postives = 136/205 (66.34%), Query Frame = 0 
Query:    7 GEEVITIYADKDYRKMEQVYISYGPKSNADLLLLYGFCLDRNPYNSVEITVSL---------------LEQDPLFDDKRVFLSQVDRREKEAFPLFADRYPNELFEYLRLVYLTPEDIQGKKLSDMDFTDPISLENELAAMASIESACEDALASYSTKEEDDARLINDGKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQLL 197
            G+E + +YAD+ YR+MEQ+YISYGPKSNA+LLLLYGF ++RNP+NSV++TVS+               +  DPL ++K  FL  V R     FP +ADRYP E+ EYLRL+ +TP+D +GK L+  D++  IS  NE A + S+  A    L  Y   EE+D  LI D  LF +    QRMAI+HRR+EKRLLK+T AA+++Q++
Sbjct:  290 GDEEVILYADRGYRRMEQIYISYGPKSNAELLLLYGFAVERNPFNSVDVTVSIAPRTTSFIKELNDENIPVDPLAEEKLQFLESVGRANTVDFPCYADRYPTEMLEYLRLMQMTPDDTRGKPLNAFDYSRTISPGNEAAVLTSVIEAVTRQLKKYPQTEEEDNALIKDKSLFRLLSYNQRMAIRHRRNEKRLLKRTIAALEKQII 494
[Close]
BLAST of NO16G00490 vs. NCBI_GenBank
Match: XP_005856057.1 (ribulose- -bisphosphate carboxylase oxygenase small subunit n-methyltransferase i [Nannochloropsis gaditana CCMP526] >EKU20304.1 ribulose- -bisphosphate carboxylase oxygenase small subunit n-methyltransferase i [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 174.1 bits (440), Expect = 4.600e-40
Identity = 91/100 (91.00%), Postives = 96/100 (96.00%), Query Frame = 0 
Query:  111 GKKLSDMDFTDPISLENELAAMASIESACEDALASYSTKEEDDARLINDGKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQLLNLKSGKRKLRPEEE 211
            G+ L +M+FTDPISLENELAAMASIE ACE+ALASYSTKEEDDARLIND KLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQLLNL+SGKRKLRPEEE
Sbjct:    3 GRALREMEFTDPISLENELAAMASIEGACEEALASYSTKEEDDARLINDSKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQLLNLRSGKRKLRPEEE 102
[Close]
BLAST of NO16G00490 vs. NCBI_GenBank
Match: XP_005719244.1 (unnamed protein product [Chondrus crispus] >CDF39333.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 169.5 bits (428), Expect = 1.100e-38
Identity = 84/191 (43.98%), Postives = 131/191 (68.59%), Query Frame = 0 
Query:    5 IRGEEVITIYADKDYRKMEQVYISYGPKSNADLLLLYGFCLDRNPYNSVEITVSLLEQDPLFDDKRVFLSQVDRREKEAFPLFADRYPNELFEYLRLVYLTPEDIQGKKLSDMDFTDPISLENELAAMASIESACEDALASYSTKEEDDARLINDGKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQL 196
            + G+  +T+Y D+ Y +M+QV+++YGPKSN DLLLLYGF  DRNPY+SVE+ V+L ++D LF+ K+ +L +        FPL++DRYP EL E+LR   +  ED    +L + DF D ++ +NE     ++ SAC+DALA+Y    E+D +LI D  ++ MF + QR AI+ RR+EKR+L++T A +++++
Sbjct:  267 LTGKRFVTLYTDRPYAQMDQVFVTYGPKSNGDLLLLYGFITDRNPYDSVELVVALSDEDELFERKKKYLDESGVGTTATFPLYSDRYPMELIEFLRFC-VAGED----ELDNGDFGDFMNEDNETLVAKTLISACQDALAAYPQSREEDDKLIADRSMYKMFAQKQRWAIRQRRAEKRILERTIANIEREI 452
The following BLAST results are available for this feature:
BLAST of NO16G00490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24078.18.900e-10088.10ribulose- -bisphosphate carboxylase oxygenase smal... [more]
EJK62256.13.800e-5051.96hypothetical protein THAOC_17139 [Thalassiosira oc... [more]
XP_002185762.16.400e-5050.98ribulose-1,5-bisphosphate carboxylase/oxygenase sm... [more]
CBJ29688.11.600e-4851.85putative ribulose-1,5-bisphosphate carboxylase/oxy... [more]
OEU18174.16.700e-4749.02ribulose-1,5-bisphosphate caboxylase, small subuni... [more]
XP_002286075.11.100e-4652.06rubisco small subunit small subunit n-methyltransf... [more]
GAX18704.12.500e-4648.29hypothetical protein FisN_10Hh082 [Fistulifera sol... [more]
GAX17228.13.300e-4648.29hypothetical protein FisN_10Lh082 [Fistulifera sol... [more]
XP_005856057.14.600e-4091.00ribulose- -bisphosphate carboxylase oxygenase smal... [more]
XP_005719244.11.100e-3843.98unnamed protein product [Chondrus crispus] >CDF393... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00490.1NO16G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00490.1NO16G00490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00490 ID=NO16G00490|Name=NO16G00490|organism=Nannochloropsis oceanica|type=gene|length=1219bp
ATGTTCAATCCCATCAGGGGCGAGGAGGTGATAACCATTTATGCTGACAA
GGACTACCGGAAGATGGAGCAGgtaccacaaacacagcttcgctcgagct
ctctatccatcccccacctttgcatctatcttttccctctctcttcttat
tctctttcctgcattctttcggcatttctgcctcgtgatgtgctccttgt
gtgaaaaaaatgtgttcaaaattcctgtcttccttccctccttcctccct
gtagGTGTACATCTCGTACGGCCCCAAGAGCAACGCGGACCTGCTCCTCC
TCTACGGCTTCTGCCTTGACCGCAACCCCTACAACTCCGTGGAGATCACG
GTGTCACTGCTCGAGCAAGATCCGCTGTTTGATGACAAGCGGGTCTTCTT
GTCCCAGGTGGACAGAAGGGAAAAGGAGGCGTTCCCACTGTTCGCGGACC
Ggtagggagggagggggggagaaagggaaaatccacacgaattaaaaggg
cgatgattatggaaatggaggagtttggacattcatcattcaccccaacg
ttctttcctccctccttccccccctctacttgtgccctgccgattccggg
cgcacgtgtgttcgtccatcccaaggaagtgattgacataaataggaaac
ttaatcttccctccttccctctcctttctcccctcttcagCTACCCCAAC
GAGCTCTTCGAGTACCTGCGTCTTGTTTATCTCACACCCGAGGACATACA
AGGCAAGAAGCTAAGCGACATGGACTTTACAGACCCCATCAGCCTAGAGA
ACGAGCTGGCAGCCATGGCTTCCATTGAGAGTGCTTGTGAAGATgtaagt
ggaaaggaggcggggaggttgcgtgtatcttacctcatcttccatggacc
tccctatttttactcgtccattcctgcttttccccttcctgtactaatga
tgacgtcgcacctcataccccctccgtcctaccctcactctcccgccatc
ctcaagGCTCTCGCCTCCTACTCCACCAAGGAAGAGGACGACGCGCGGCT
CATAAATGACGGGAAACTTTTTAACATGTTCCCCAAGACACAGCGCATGG
CCATCAAGCATAGACGCTCCGAAAAGCGGTTGTTGAAAAAGACGGCGGCG
GCCGTGAAGCAGCAGTTGCTCAACTTGAAAAGTGGGAAGAGGAAGTTGAG
GCCAGAGGAGGAGGATTAA
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protein sequence of NO16G00490.1

>NO16G00490.1-protein ID=NO16G00490.1-protein|Name=NO16G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MFNPIRGEEVITIYADKDYRKMEQVYISYGPKSNADLLLLYGFCLDRNPY
NSVEITVSLLEQDPLFDDKRVFLSQVDRREKEAFPLFADRYPNELFEYLR
LVYLTPEDIQGKKLSDMDFTDPISLENELAAMASIESACEDALASYSTKE
EDDARLINDGKLFNMFPKTQRMAIKHRRSEKRLLKKTAAAVKQQLLNLKS
GKRKLRPEEED*
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Synonyms
Publications