NO16G00420, NO16G00420 (gene) Nannochloropsis oceanica

Overview
NameNO16G00420
Unique NameNO16G00420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3553
Alignment locationchr16:154309..157861 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:154309..157861 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G00420 vs. NCBI_GenBank
Match: EWM24082.1 (hypothetical protein Naga_102131g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 149.4 bits (376), Expect = 5.200e-32
Identity = 81/161 (50.31%), Postives = 107/161 (66.46%), Query Frame = 0 
Query:  540 RYKLRALLLQDELIRARHALSAXXXXXXXXXXXXXXXXXXXXEATRLTLEREEELKREREGFEKVIDTITNECARLQGGLQKNEVALIMAERAVGKWKMRYREDVKKLNEEVLELDEVLYGMEKEQEGREAVWAATEMKYRRQMGAMRRRNLELMEKLKEI 701
            RYK+R LLL++EL   R +L+                      A R T E E+ L+ E  G++ V+  +T EC  LQG +Q+ E A ++AE A  KWK RYR+DV+++NEEVL LDEV+YG+EKEQE R+AVWAA EMKY+RQ+ AMR+RNLEL EKLKE+
Sbjct:  114 RYKIRTLLLEEELRGTRQSLANVLEGLGEAREHESSLATALARAQRATEEAEKLLEEEGRGYQGVVTALTEECHALQGQVQEKEFARLLAEEATQKWKTRYRQDVRQMNEEVLALDEVVYGLEKEQERRQAVWAAAEMKYKRQLSAMRKRNLELQEKLKEV 274
The following BLAST results are available for this feature:
BLAST of NO16G00420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24082.15.200e-3250.31hypothetical protein Naga_102131g1, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00420.1NO16G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|75659gene_5919Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_102131g1gene6387Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00420.1NO16G00420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00420 ID=NO16G00420|Name=NO16G00420|organism=Nannochloropsis oceanica|type=gene|length=3553bp
ACGTTGAATGGTTTTGTTTTTGACAGCTTTCCATGGAACGGAGGAGGAAT
GGCGTGGGAAACAACAAACCAAAGAGGCCTGGCCATTCCGGCGGGAATGA
GGCAGGTGGGTCGAAGCCCTTTTCCATGAAGACGGATAATGGAATGGACG
TCACTTCTCTCATTCATTTATGAGGTATGGTACACCGTATTCCTCCTTCA
GGTCGAGAATGTGACCATATCACCATACACAAATGGAGGGGAAAAGCAAC
CAGCATGTCGATGGGCTTCTCCCGCTAGGCGCCAAAAGTGGCTTGGCTCG
CCTGCCCGTAAAAAGGAAGAGTTTTACGAGTCGATAAAGCATCGAGCAAC
GCACAACGGGGCGGCACTTTTGTCCGTAAAGCCTCCACCGGTTGGCCATT
CACATTCTATTGATTGTCGATGGCGTGGTAGTTAGCGTAAATTCTCGGAT
TTGATGCCGCTGTGTTGTCATCCTCACAATCACAGTCATTCAAACGCACG
TACGACAATCCTCACCCACTCCAACTCCCTCATCCTGGTGAATCAGGTCG
TACGCAGCAGCACCACAAGACGCTCGGTACAAGGCCATACCTTTCGAACA
GGAGGATGGGTTCGTCCCTCCCCTCCCTTCCACGCCTCTGCTCTCGCTCT
GTCATACTCCCCAGGGGCCTCCTCGTGCTGCTAGTGCTCCTCCTCTTAAG
CCGGCACGCCATCGTCACTCCCCATGCCTTTGTCGTCGTACCACCCTTTC
AAGATTACCAGCACCAGCGGCGGCACCCTCATCACCAGCCGCAGGAGCAC
AAGCGGGAGGAGCGGCAAAGGCAGAGAAGGTCCACGACGACAACCTCAAT
GCGACTGCTCCTCCTTCCCTCCCTCTCCACGCACCGGACGCTCTTGAAAA
AGGTGCCCCTCCAACCGCGTGCCGCCGCTGCCACGACAAGCACGACCAGC
GGTACGGTGAGCGAGGGCATTGGTGGAGAGGGCAGTGGGGCCGTCAGGGG
AGGCAGCAACAGCAAGAGCAGCAATCCATTTAACAGCAAGGGCAGCAACC
CAATCACTGCCTTTCTGGCAGGTTTGTTTTCGTCGGCTTCTCCTGCTGTT
GAAACCAAACGGAAGGAGCAACCGCAGTTCTTCGCGGCAACGGACCAGGA
GGAAGACGAGGAGGAAGACGAGGAGGAGATCGAGGGGGAGGGTGAAGGTG
GACGGGAGGAGAGGATGGGGAATGGTGGAGAGGACAAGGAGGGGGAGCAG
CGGCAACGGCAGCGGGAGCGACCGGGCCATTCCATGCATGGCACCGTTCC
TTCCCGCAATGTCTTCCAAACCTTGCGTGCGCCTTCGTGGACAAGCAGCA
GCAGCAGCAGCAGCAGCCTATTTTTCTCCACCTTGTCGTCCTCGACGCTG
CGCCGACGTGAGGAGGCAGAGAGGATAAGGGAAGGGAAAGGCGAGGAGGA
GGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAAGCTATCCAC
TTCCAGTCAGGGAGGAGGGGAAGGGAGTAGACAATGTTTCAGAGCTGGCG
GGCAAACCCGTCGCATCCTCGCACGGAGGTAGCAGCAGTGGCGGCAACGA
CAGCGATGAAGGGAAGGAGGAGGAAGAGGAGGATGAGGAGGTGATGGTGG
TGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAA
GAGGCAGCTATGGACAGCGTGGAGAAGACATTGACACTAGGTCTCGAAGA
CATTGACACCCCTCCCTCCCTCCCTCCCTCCTCCTTCTCCTCCTCCTTCT
CCTTGGCGGACGAGGGAGATGAAGAGAAGGAGGAGGAGGAGGAGGAGGAA
GAGGAGGACGCACCAATGATTGCGAGCGAGGCGGAGGTAACGGAGGAAGT
AATTGAGGCTGTGGTGGAGGAGCTTCTTCATGACCCGGGAGAGGCTGATG
GCAGACCTCCCTCCTCCTCCTCCTCCCCTACCCTCACCACTACCTTGCCC
CCCACGCCCGTGGCTGTATCTCCCTCCTACCCTTCCTCCTCCTCCTCGAC
CTCCTCATCCTCCTTTACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCTCCTTCTTCACCTCAAGCAGCAGCAACAACAGGAGGAGCAGCAGAA
GTAGAAAAATCGTTAACGACAGCAGCAGGTGCAGGAGAAGAAGGAAAAGA
TGAAAAAGAGGAGGATTTGCGTCGATACAAATTGCGTGCCCTTCTCCTGC
AAGATGAGCTAATACGCGCCCGACATGCCCTTTCCGCGGCCACCGCCGCC
GCCTCCGCAAGTGAGACCGAGCGATCCTCCCTCTCTTCCGCTCTCTCAGA
GGCCACACGCCTTACCTTGGAGAGAGAGGAGGAGTTAAAGAGGGAGCGGG
AGGGTTTCGAGAAGGTCATCGATACAATTACAAATGAATGCGCGCGTCTT
CAAGGAGGCCTCCAAAAGAATGAGGTCGCTTTGATCATGGCCGAGAGGGC
CGTAGGGAAGTGGAAGATGCGGTATAGGGAGGACGTGAAGAAGTTGAACG
AGGAGGTATTGGAGCTGGACGAGGTGCTGTACGGCATGGAGAAGGAGCAG
GAAGGGAGGGAGGCCGTGTGGGCCGCGACCGAGATGAAGTATCGGAGGCA
GATGGGGGCGATGCGGCGAAGGAATTTGGAGCTGATGGAGAAGCTCAAGG
AGgtgaggaagggagggagggaaggagggaatgagggagggggggaagcg
atgagtgggtgtatgtgtccacccttgtcatatcttgcccttgttctctt
ttgtgttggtaacggccatggcgagcctttccctcgtggccaggcgcaca
cactgactgacatccttcttcccctccttccctccctccctctctccttg
tatccatctgaatttaattttgaaaaaaacaaacaaaacagATCTCCTTG
ATGGAAGCGGAGTCCATGGAAGTGGTGGATCGGCTTAAACGTCAGGTAGC
CAGCCTGGGCGGACCTAGCAGCAGCAGCAGCAGTAACGGCAGCAGCAGCT
CCCGCTTCCGGCGGGAGGAGCAGGAGGGACAGAGGGAAGGAAGGAGGGAG
GGAGAGTTCTCTTCTTCGACATTTCTTGGTCGTCAGCAGCGGGCCTCGAG
TGCGCATGTTGCTGCTGCTGCTGCTGCTGCTGATGGTGAGGATGATGACG
ATACTGCTGATGATAATATTGATGGTGAGGCGGTTGGTGTTGCGGAGGAA
CAGCTGATAGAGCTCGAGGAGGACGACGAGGATAGTTCCCCTTTTACATC
TTCGGTCATGGGCAGTGACAATAGCAGGAATAGCAGGGGAAGCAGAAATA
GGAGGAGGAAGAGCAGCAGCAGCAGCAGCAGCAGCAGTGTGGGGCACGGG
AAGGCCATTACGGGGGGTATAACCTCTTTCGCCTCCATGGATACTTCGAG
AGGGGGGAGAGAGGGAGGAGGGAAGGCTAAGGAGGAAGGGGGGGGGGAGG
GTCAGGGAGGGGTACCATGCGCCGGGCCTTGCGAGACGCCTTCCGGAAGC
TGA
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protein sequence of NO16G00420.1

>NO16G00420.1-protein ID=NO16G00420.1-protein|Name=NO16G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=903bp
MGSSLPSLPRLCSRSVILPRGLLVLLVLLLLSRHAIVTPHAFVVVPPFQD
YQHQRRHPHHQPQEHKREERQRQRRSTTTTSMRLLLLPSLSTHRTLLKKV
PLQPRAAAATTSTTSGTVSEGIGGEGSGAVRGGSNSKSSNPFNSKGSNPI
TAFLAGLFSSASPAVETKRKEQPQFFAATDQEEDEEEDEEEIEGEGEGGR
EERMGNGGEDKEGEQRQRQRERPGHSMHGTVPSRNVFQTLRAPSWTSSSS
SSSSLFFSTLSSSTLRRREEAERIREGKGEEEEEEEEEEEEEEEESYPLP
VREEGKGVDNVSELAGKPVASSHGGSSSGGNDSDEGKEEEEEDEEVMVVE
EEEKEEEEEEEEEEEEAAMDSVEKTLTLGLEDIDTPPSLPPSSFSSSFSL
ADEGDEEKEEEEEEEEEDAPMIASEAEVTEEVIEAVVEELLHDPGEADGR
PPSSSSSPTLTTTLPPTPVAVSPSYPSSSSSTSSSSFTSSSSSSSSSSSS
PSSPQAAATTGGAAEVEKSLTTAAGAGEEGKDEKEEDLRRYKLRALLLQD
ELIRARHALSAATAAASASETERSSLSSALSEATRLTLEREEELKREREG
FEKVIDTITNECARLQGGLQKNEVALIMAERAVGKWKMRYREDVKKLNEE
VLELDEVLYGMEKEQEGREAVWAATEMKYRRQMGAMRRRNLELMEKLKEI
SLMEAESMEVVDRLKRQVASLGGPSSSSSSNGSSSSRFRREEQEGQREGR
REGEFSSSTFLGRQQRASSAHVAAAAAAADGEDDDDTADDNIDGEAVGVA
EEQLIELEEDDEDSSPFTSSVMGSDNSRNSRGSRNRRRKSSSSSSSSSVG
HGKAITGGITSFASMDTSRGGREGGGKAKEEGGGEGQGGVPCAGPCETPS
GS*
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Synonyms
Publications