NO16G00370, NO16G00370 (gene) Nannochloropsis oceanica

Overview
NameNO16G00370
Unique NameNO16G00370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2610
Alignment locationchr16:140465..143074 +

Link to JBrowse

Properties
Property NameValue
DescriptionRNI-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:140465..143074 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G00370 vs. NCBI_GenBank
Match: CBN74366.1 (Hypothetical leucine rich repeat protein [Ectocarpus siliculosus])

HSP 1 Score: 82.0 bits (201), Expect = 6.200e-12
Identity = 73/256 (28.52%), Postives = 101/256 (39.45%), Query Frame = 0 
Query:  270 WCGPFATARKIMREREAAREAREA---------------------------XLXXXXXXXXXXXXXXXXXXLSLSAQCLAFLLDHVDELEGLGEVSTQVRYQFAEALARQGKLTPEIVLRCIAHPGLLEFYLPDCKHVNESTLIAAFERVAQYPEADEEEDNPIQSRGPLDGPCSPPSSSSSRLKILRLRWAGQALGPRVLSIFTSLSLGASLTTLELTGLYRLPDHPLLLLLASCPVLTTLELPFKSSVSVALVE 499
            W GPFA AR++M  REAA   RE+                                                SL   CL  L D+ D +E LG+VS +VR   A  + RQ KLT E + R ++ PG+ E  LPDC  +                E D+  ++ +Q R                L++LRL   G+ +G   L   T       L    L G Y+L D  +L LL+ CP LT LEL   S +++  +E
Sbjct:  232 WPGPFAEARRLMDNREAAAALRESIRVNGKAQPASDEDGDSDDEGDETPPPIKVDWKPTGKGSRSGKSRTIPSLFRLCLDLLADNFDHIESLGDVSPEVRNHLAAVMCRQLKLTTEALQR-LSEPGVTEIILPDCSRI----------------EPDQMRNSILQCR--------------RTLRVLRLGTCGRCVGDATLEALTKAGGVPRLEMASLAGTYQLTDAGVLELLSCCPRLTGLELSANSRITLKALE 456
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BLAST of NO16G00370 vs. NCBI_GenBank
Match: XP_005645942.1 (RNI-like protein [Coccomyxa subellipsoidea C-169] >EIE21398.1 RNI-like protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 66.6 bits (161), Expect = 2.700e-7
Identity = 53/172 (30.81%), Postives = 77/172 (44.77%), Query Frame = 0 
Query:  316 LSAQCLAFLLDHVDELEGLGEVSTQVRYQFAEALARQGKLTPEIVLRCIAHPGLLEFYLPDCKHVNESTLIAAFERVAQYPEADEEEDNPIQSRGPLDGPCSPPSSSSSRLKILRLRWAGQALGPRVLSIFTSLSLGASLTTLELTGLYRLPDHPLLLLLASCPVLTTLELP 488
            L + CLA L++++D++E L  + T ++ Q A A+A   ++TPE VLR     G  E  LP+C  +  +TL  A                          PC+ P     RL+ L L   G+  G  V +   +    + L +L L G YR  D  L  LLA+ P L  L LP
Sbjct:  108 LFSMCLAVLVEYIDDVETLYGMPTMIKVQLARAVADARRMTPE-VLRLFTDDGPDEVVLPECSQLMPATLAEALV------------------------PCATP-----RLERLELGLCGRGFGDAVAAAMVAGGQLSRLRSLTLGGAYRTTDADLAKLLAAAPDLAELRLP 249
The following BLAST results are available for this feature:
BLAST of NO16G00370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
CBN74366.16.200e-1228.52Hypothetical leucine rich repeat protein [Ectocarp... [more]
XP_005645942.12.700e-730.81RNI-like protein [Coccomyxa subellipsoidea C-169] ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00370.1NO16G00370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00370.1NO16G00370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00370 ID=NO16G00370|Name=NO16G00370|organism=Nannochloropsis oceanica|type=gene|length=2610bp
ATGTCGGGCGAACGTGTTGCCAAGAAAGCCAAGGGCTCTACAGCCACCGT
AGTGACCGCCGCGACCGTGCCCGCATCTGCTGCCGCGTCTTCGCCGGGCG
CTTCCGTCGCTACCGAGATGGTAGACGACCCTGACGATGATGAGCGGACC
ATCACGCAACGCACGCAATCTCCGGGCCAGCAGAAGGAAGCGGGCGCCGG
GGAGGACATGGCACCTACCCTTTCTTCTTTCTCGACTTCATCCGGCCCCT
CTTTTGCCTCGGGTGTGGCTGCTGCTGTCGCTGCTGCAGCTGGTTTAGTC
CCTATCAAGAGACCTCTCCGCAGCAGAAGCGTTGTTGGCGGCAACGGGGG
AGGGAATGGAATGAAGGTGAAGACGGAGGAAGAGGAGGAGGAGAAGAAGG
AAAAAGAAGAAGAAGAAGAGAAAGAGGAGCAGACAGAAGAGGAAACGTCT
ACCAAGGCAAATGCCAGCAGCAGAAGCCAGGAAAAAGGCAAAGGGAAAGT
AAGAGCAGAAGAAGGAAAAAACGGAGGGGGGCGAGGAGGAGCAGGAGGAG
GACGGAAGGAGTCCATGCGTCGGGTGGCTGAGAGCCGGGCTGCCTTCTTT
GCCCGTGCCGATGCTGGCGACCGTGCAGTGCCACAGGCCATGTCAGGGGG
AGGGCTGGAGGAAAGAGGGGGGTCAGGGCAGGTGGGACGGTCGGTGCGGA
GTTCGATGCCTCTACCGGCATTGGAGGAGAAGAAGAAGAAGAGGACGAAA
AGGAAGAAGGAGGAGGGCGGGAAGAAGGGAGGAAGGGAGGGGGAGGAGAA
GGAGGAGTGGTGTGGCCCGTTTGCAACGGCGAGGAAGATAATGAGGGAGA
GGGAGGCGGCGAGGGAGGCCCGGGAGGCACGATTGGAAGCGGGGGGAGGC
TCGAGCGAGGAGGAGTCTTCTTCAGAGGAAGAGGAGgtaggggagggggg
ggggggaacaaaaagaagaggaaggagaagaagaaggtggtggtggagtg
gacgccgatggtgcggaagacgagacccggggtctggcatcagCCGTTGT
CGCTGAGTGCCCAGTGCCTGGCCTTCTTGCTCGATCACGTGGACGAGTTG
GAGGGCTTGGGGGAGGTGTCGACGCAGgtagggagggagggagggaggga
gggacaggcgggtgtgttgtccacgagtgggtattgttcggctgtttggc
gtaagacttgcccttccctccctccctccctccctccctccctccctccc
tccctccctcccctcagGTCCGGTATCAATTCGCCGAGGCCCTGGCACGA
CAAGGCAAGCTGACGCCCGAGATCGTCTTGCGCTGCATCGCCCATCCCGG
CCTACTGGAGTTTTACCTTCCCGgtaccaagggagggagggagggaggga
gggagggagggagggagaatgggggaatgaggaaaggaaatgactcgaca
actttacaccattgtctatgcatactcataaatatatatatagtatatat
attatatacacatgcatctgcaccccctcacattcccctgctcccaaccc
ccccctacggcacacagACTGCAAGCACGTCAACGAAAGCACCCTCATCG
CGGCCTTTGAACGCGTGGCCCAATACCCGGAGGCAGACGAGGAGGAGGAC
AATCCCATTCAGgtacgccctccctccctccctcccttcctccctccctc
cctccctccctctccctcttcaacctcctctccctcttcaaccccctcct
tccttcctcatctcactatttcactcacctccctctgtccttctcctgtc
tcgctaactcactcacgctgtcctcccctctaccttcttccctgaagAGC
CGTGGTCCTCTCGATGGCCCTTGCTCCCCCCCTTCCTCCTCCTCCTCCCG
CCTGAAAATCCTCCGTCTCCGATGGGCGGGCCAGGCCCTCGGTCCACGGG
TGCTGTCTATCTTCACCTCCCTCTCCCTGGGAGCTTCCTTGACTgtagga
gggagggagggagggagggagggagggagggagggagggaaagggggaac
tgtgtttcccgtatctctatttcttcaataggtgattcattcatctctcc
ctgcctccctctctccctccctctctccctccctctttctccttccctcc
ttccatctttcagACGCTCGAGCTTACGGGCCTCTACCGCCTACCTGACC
ACCCCCTCCTCCTCCTCCTCGCCTCCTGCCCCGTCCTCACTACGCTGGAG
CTGCCGTTCAAGAGCTCTGTCTCGGTCGCCCTGGTGGAGGGGATCGCTGC
CCGCTGCTGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAAGG
AGGGACGTTGCGGGCGTTGTCCATTGCCTTCTGTGCTGATgtatgtagag
gaagggagggagggagggagggagggaaagagggagaaagggaaggaagg
gaggcagaaaagaaggtatatatcttctcagtcgccacctcatctatctt
accctcccaccttcccccctccctccctccctccctccctccctccctcc
cccagCTCTCCCCCGCCAGCGCCGCCGCCCTCTCGTCGCTACAGGGCATG
TATAAACTAG
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protein sequence of NO16G00370.1

>NO16G00370.1-protein ID=NO16G00370.1-protein|Name=NO16G00370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=550bp
MSGERVAKKAKGSTATVVTAATVPASAAASSPGASVATEMVDDPDDDERT
ITQRTQSPGQQKEAGAGEDMAPTLSSFSTSSGPSFASGVAAAVAAAAGLV
PIKRPLRSRSVVGGNGGGNGMKVKTEEEEEEKKEKEEEEEKEEQTEEETS
TKANASSRSQEKGKGKVRAEEGKNGGGRGGAGGGRKESMRRVAESRAAFF
ARADAGDRAVPQAMSGGGLEERGGSGQVGRSVRSSMPLPALEEKKKKRTK
RKKEEGGKKGGREGEEKEEWCGPFATARKIMREREAAREAREARLEAGGG
SSEEESSSEEEEPLSLSAQCLAFLLDHVDELEGLGEVSTQVRYQFAEALA
RQGKLTPEIVLRCIAHPGLLEFYLPDCKHVNESTLIAAFERVAQYPEADE
EEDNPIQSRGPLDGPCSPPSSSSSRLKILRLRWAGQALGPRVLSIFTSLS
LGASLTTLELTGLYRLPDHPLLLLLASCPVLTTLELPFKSSVSVALVEGI
AARCCREGGREGGREGEKEGRCGRCPLPSVLISPPPAPPPSRRYRACIN*
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Synonyms
Publications