NO16G00340, NO16G00340 (gene) Nannochloropsis oceanica

Overview
NameNO16G00340
Unique NameNO16G00340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length975
Alignment locationchr16:125249..126223 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:125249..126223 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0019236response to pheromone
GO:0007186G protein-coupled receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO16G00340 vs. NCBI_GenBank
Match: OLP86696.1 (Integral membrane protein [Symbiodinium microadriaticum])

HSP 1 Score: 173.7 bits (439), Expect = 9.300e-40
Identity = 101/266 (37.97%), Postives = 145/266 (54.51%), Query Frame = 0
Query:   91 FTNIYKSADWGTSPSSHTRSGSGSTITGAFETITKLEPKFRELNITAIADVPSGDCGWQFALSTINAADAYFGGDITPHVAQENAQIFHNHLNKVFAFWDLVECPIPQWYTTCDSTPRPFDIVIVRDVIQHMRLNNAARAIKLIVEESGASYMAVTSF--------------STERCTDQ-------------CLTA-------------LQSDGGFYHNNLHCPPWNFPEPFYSFPSHDNFPEEADHMELYRVDDLKTIVANWQE 317
            F +++K+  WG S S  T SG+GS   GA++ +  +     + NI  +AD+P GD  WQF++  IN A AYFGGDI+  VA+ NA+ + +H+NK+F  WDL+EC +PQ      S+  PFD+VI RD IQHM + +   A+K IV  SGA Y AV+S+              S++R   Q             C T+              +  G +Y N + C P+NFP P    PSH+ F  E DH+++YRVDDLK++  +W E
Sbjct:  254 FDHVHKTNSWG-SDSRITTSGTGSDQKGAYDWVYHINLFILQYNIQTVADLPCGDVAWQFSVPGINKAKAYFGGDISASVARRNAEQYTSHMNKIFRHWDLIECGVPQ--CCRGSSCAPFDLVITRDAIQHMTVFDGLLAVKSIV-HSGAKYFAVSSYLPGTVDRKWKSLGLSSQRAPGQPMGLRREDDYIRECQTSDELKRKFCKPGQRTEETGWWYPNVMRCFPFNFPPPIVDRPSHETFKIENDHLQIYRVDDLKSV--DWNE 513          
BLAST of NO16G00340 vs. NCBI_GenBank
Match: WP_011381501.1 (hypothetical protein [Nitrosospira multiformis] >ABB75494.1 hypothetical protein Nmul_A2202 [Nitrosospira multiformis ATCC 25196] >SEG02322.1 Glycosyltransferase Family 4 [Nitrosospira multiformis ATCC 25196])

HSP 1 Score: 89.7 bits (221), Expect = 1.800e-14
Identity = 72/210 (34.29%), Postives = 91/210 (43.33%), Query Frame = 0
Query:   75 QLGSRCSAGRH--DVANRFTNIYKSADWGTSPSSHTRSGSGSTITGAFETITKLEPKFRELNITAIADVPSGDCGWQFALSTINAADAYFGGDITPHVAQENAQIFHNHLNKVFAFWDLVECPIPQWYTTCDSTPRPFDIVIVRDVIQHMRLNNAARAIKLIVEESGASYMAVTSFSTERCTDQCLTALQSDGGFYHNNLHCPPWNFPEP 283
            Q GS+     H  D  + F  IY    W    S  +RSG GST+        +L P    L +  + D P GDC W+    T+   DAY G DI P + +EN Q F  H N  F   DLVE          D  PR  D V+ RD + H+ L +  RA+  I   SGA Y+  TS  T        T     GG+   NL   P+N P P
Sbjct:  418 QDGSKAGENNHSADRVSVFEQIYVRNAW---QSPESRSGPGSTLERTEILRCELPPLLARLGVRTLVDAPCGDCNWR--QHTVIDLDAYIGVDIVPALIEENRQRF-PHSNWRFEVADLVE----------DDLPRG-DAVLCRDALIHLSLTDILRALSNI-RRSGAKYLLATSHETTSANTDIAT-----GGWRSVNLTLAPFNLPPP 604          
BLAST of NO16G00340 vs. NCBI_GenBank
Match: WP_074774459.1 (hypothetical protein [Nitrosospira multiformis] >SEA37814.1 Glycosyltransferase Family 4 [Nitrosospira multiformis])

HSP 1 Score: 89.7 bits (221), Expect = 1.800e-14
Identity = 72/210 (34.29%), Postives = 91/210 (43.33%), Query Frame = 0
Query:   75 QLGSRCSAGRH--DVANRFTNIYKSADWGTSPSSHTRSGSGSTITGAFETITKLEPKFRELNITAIADVPSGDCGWQFALSTINAADAYFGGDITPHVAQENAQIFHNHLNKVFAFWDLVECPIPQWYTTCDSTPRPFDIVIVRDVIQHMRLNNAARAIKLIVEESGASYMAVTSFSTERCTDQCLTALQSDGGFYHNNLHCPPWNFPEP 283
            Q GS+     H  D  + F  IY    W    S  +RSG GST+        +L P    L +  + D P GDC W+    T+   DAY G DI P + +EN Q F  H N  F   DLVE          D  PR  D V+ RD + H+ L +  RA+  I   SGA Y+  TS  T        T     GG+   NL   P+N P P
Sbjct:  418 QDGSKAGENNHSADRVSVFEQIYVRNAW---QSPESRSGPGSTLERTEILRCELPPLLARLGVRTLVDAPCGDCNWR--QHTVIDLDAYIGVDIVPALIEENRQRF-PHSNWRFEVADLVE----------DDLPRG-DAVLCRDALIHLSLTDILRALSNI-RRSGAKYLLATSHETTSANTDIAT-----GGWRSVNLTLAPFNLPPP 604          
BLAST of NO16G00340 vs. NCBI_GenBank
Match: XP_016612374.1 (hypothetical protein SPPG_00066 [Spizellomyces punctatus DAOM BR117] >KND04335.1 hypothetical protein SPPG_00066 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 88.6 bits (218), Expect = 3.900e-14
Identity = 64/203 (31.53%), Postives = 95/203 (46.80%), Query Frame = 0
Query:   89 NRFTNIYKSADWGTSPSSHTRSGSGSTITGAFETITKLEPKFRELNITAIADVPSGDCGWQFALSTINAADAYFGGDITPHVAQENAQIFHNHLNKVFAFWDLVECPIPQWYTTCDSTPRPFDIVIVRDVIQHMRLNNAARAIKLIVEESGASYMAVTSFSTERCTDQCLTALQSDGGFYHNNLHCPPWNFPEP-FYSFPSHD 291
            N F +I+++  WG   S   RSG GST+         ++      +I    D P GDC WQ  + + +   AY G DI P+V  +N + +    N  F   DL    +P            FD ++ RD IQH+ L +  + I    + SGA Y+ +T+F   R  +   T ++  G FYHNN   PP+NF  P FY+  + D
Sbjct:   86 NTFVSIFENNGWGNPES---RSGPGSTVRNTARIRNFIDTVINHFSIQTFLDAPCGDCNWQPGIPSFSKI-AYTGADIVPNVIIQNMRKYLYKPNMRFVNLDLAMDAVPH---------DAFDAILCRDAIQHLPLEDGLK-IYSNFQRSGAKYL-ITNFHDPRKGNFQNTNIK-PGDFYHNNPLLPPFNFSLPLFYTIDASD 272          
BLAST of NO16G00340 vs. NCBI_GenBank
Match: WP_074703759.1 (methyltransferase domain-containing protein [Nitrosospira multiformis] >SES66220.1 Methyltransferase domain-containing protein [Nitrosospira multiformis])

HSP 1 Score: 85.9 bits (211), Expect = 2.500e-13
Identity = 69/197 (35.03%), Postives = 86/197 (43.65%), Query Frame = 0
Query:   86 DVANRFTNIYKSADWGTSPSSHTRSGSGSTITGAFETITKLEPKFRELNITAIADVPSGDCGWQFALSTINAADAYFGGDITPHVAQENAQIFHNHLNKVFAFWDLVECPIPQWYTTCDSTPRPFDIVIVRDVIQHMRLNNAARAIKLIVEESGASYMAVTSFSTERCTDQCLTALQSDGGFYHNNLHCPPWNFPEP 283
            D  + F  IY    W    SS +RSG GST+        +L P    L +  + D P GDC W+    T    DAY G DI P + +EN Q F  H N  F   DLVE          DS PR  D V+ RD + H+ L +  RA+  I   SGA Y+  TS           T     GG+   NL   P+N P P
Sbjct:  431 DRVSVFEQIYTCNAW---QSSESRSGPGSTLERTGILRRELPPLLTRLGVRTLVDAPCGDCNWR--QHTAIDLDAYIGVDIVPALIEENRQRF-PHPNWRFEVADLVE----------DSLPRG-DAVLCRDALIHLSLADILRALSNI-RRSGAKYLLATSHEMTSANTDIAT-----GGWRSVNLTLAPFNLPPP 604          
BLAST of NO16G00340 vs. NCBI_GenBank
Match: WP_107762824.1 (hypothetical protein [Nitrosospira multiformis] >PTQ79840.1 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Nitrosospira multiformis])

HSP 1 Score: 85.1 bits (209), Expect = 4.300e-13
Identity = 68/197 (34.52%), Postives = 86/197 (43.65%), Query Frame = 0
Query:   86 DVANRFTNIYKSADWGTSPSSHTRSGSGSTITGAFETITKLEPKFRELNITAIADVPSGDCGWQFALSTINAADAYFGGDITPHVAQENAQIFHNHLNKVFAFWDLVECPIPQWYTTCDSTPRPFDIVIVRDVIQHMRLNNAARAIKLIVEESGASYMAVTSFSTERCTDQCLTALQSDGGFYHNNLHCPPWNFPEP 283
            D  + F  IY    W    SS +RSG GST+        +L P    L +  + D P GDC W+    T    DAY G DI P + +EN + F  H N  F   DLVE          D  PR  D V+ RD + H+ L +  RA+  I   SGA Y+  TS  T        T     GG+   NL   P+N P P
Sbjct:  431 DRVSVFEQIYTRNAW---QSSESRSGPGSTLERTEILRRELPPMLARLGVRTLVDAPCGDCNWR--QHTAIDLDAYIGVDIVPTLIEENRRRF-PHPNWRFELADLVE----------DDLPRG-DAVLCRDALIHLSLADILRALSNI-RRSGAKYLLATSHETISANTDVTT-----GGWRSVNLMLAPFNLPPP 604          
BLAST of NO16G00340 vs. NCBI_GenBank
Match: XP_002297201.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED86526.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 84.0 bits (206), Expect = 9.700e-13
Identity = 47/135 (34.81%), Postives = 70/135 (51.85%), Query Frame = 0
Query:   92 TNIYKSADWGT-SPSSHTRSGSGSTITGAFETITK-LEPKFRELNITAIADVPSGDCGWQFALSTINAADAYFGGDITPHVAQENAQIFHNHLNKVFAFWDLVECPIPQWYTTCDSTPRPFDIVIVRDVIQHMRL 225
            ++ Y  A W T +  + + SG GS +  A ET  K ++    + ++ ++ DVP GD  W F     +    Y G D+T  V   N   FH+H NK F+FWD  EC +P++          F++V VRDVIQH+ L
Sbjct:   77 SDFYSDAAWPTKAMRASSASGPGSNLGYATETSLKIIKDAIAKYHVQSMIDVPCGDVNWVFDSLETDTLPIYLGLDVTSAVIDVNNVRFHHHNNKFFSFWDATECVLPKFKNGTAVELSSFELVHVRDVIQHLTL 211          
BLAST of NO16G00340 vs. NCBI_GenBank
Match: ODT78013.1 (hypothetical protein ABS69_08250 [Nitrosomonadales bacterium SCN 54-20])

HSP 1 Score: 82.4 bits (202), Expect = 2.800e-12
Identity = 66/197 (33.50%), Postives = 85/197 (43.15%), Query Frame = 0
Query:   86 DVANRFTNIYKSADWGTSPSSHTRSGSGSTITGAFETITKLEPKFRELNITAIADVPSGDCGWQFALSTINAADAYFGGDITPHVAQENAQIFHNHLNKVFAFWDLVECPIPQWYTTCDSTPRPFDIVIVRDVIQHMRLNNAARAIKLIVEESGASYMAVTSFSTERCTDQCLTALQSDGGFYHNNLHCPPWNFPEP 283
            D  + F  IY    W    S  +RSG GST+        +L P    L +  + D P GDC W+    T    DAY G DI P + +EN + F  H N  F   DLVE          D  PR  D V+ RD + H+ + +  RA+  I   SGA Y+  TS  T        T     GG+   NL   P+N P P
Sbjct:  431 DRVSVFEQIYARNAW---QSPESRSGPGSTLERTEILRRELPPLLARLGVRTLVDAPCGDCNWR--QHTAIDLDAYIGVDIVPALIEENRRRF-PHPNWRFEVADLVE----------DDLPRG-DAVLCRDALIHLSMADILRALSNI-RRSGAKYLLATSHETTSANTDIAT-----GGWRSVNLTLAPFNLPPP 604          
BLAST of NO16G00340 vs. NCBI_GenBank
Match: WP_081363554.1 (hypothetical protein [Nitrosospira multiformis] >SFU57960.1 Glycosyltransferase Family 4 [Nitrosospira multiformis])

HSP 1 Score: 82.0 bits (201), Expect = 3.700e-12
Identity = 67/197 (34.01%), Postives = 84/197 (42.64%), Query Frame = 0
Query:   86 DVANRFTNIYKSADWGTSPSSHTRSGSGSTITGAFETITKLEPKFRELNITAIADVPSGDCGWQFALSTINAADAYFGGDITPHVAQENAQIFHNHLNKVFAFWDLVECPIPQWYTTCDSTPRPFDIVIVRDVIQHMRLNNAARAIKLIVEESGASYMAVTSFSTERCTDQCLTALQSDGGFYHNNLHCPPWNFPEP 283
            D  + F  IY    W    SS +RSG GST+        +L P    L +  + D P GDC W+    T    DAY G DI P + +EN + F  H N  F   DLVE          D  PR  D V+ RD + H+ L    RA+  I   SGA Y+  TS           T     GG+   NL   P+N P P
Sbjct:  431 DRVSVFEQIYARNAW---QSSESRSGPGSTLERTEILRQELPPLLARLGVRTLVDAPCGDCNWR--QHTAIDLDAYIGVDIVPALIEENRRRF-PHPNWRFELADLVE----------DDLPRG-DAVLCRDALIHLSLAEILRALSNI-RRSGAKYLLATSHEKISANTDVTT-----GGWRSVNLMLAPFNLPPP 604          
BLAST of NO16G00340 vs. NCBI_GenBank
Match: WP_074744770.1 (methyltransferase domain-containing protein [Nitrosospira multiformis] >SEN21476.1 Methyltransferase domain-containing protein [Nitrosospira multiformis])

HSP 1 Score: 79.0 bits (193), Expect = 3.100e-11
Identity = 66/197 (33.50%), Postives = 84/197 (42.64%), Query Frame = 0
Query:   86 DVANRFTNIYKSADWGTSPSSHTRSGSGSTITGAFETITKLEPKFRELNITAIADVPSGDCGWQFALSTINAADAYFGGDITPHVAQENAQIFHNHLNKVFAFWDLVECPIPQWYTTCDSTPRPFDIVIVRDVIQHMRLNNAARAIKLIVEESGASYMAVTSFSTERCTDQCLTALQSDGGFYHNNLHCPPWNFPEP 283
            D  + F  IY    W    S  +RSG GS +        +L P    L +  + D P GDC W+    T    DAY G DI P + +EN + F  H N  F   DLVE          D  PR  D V+ RDV+ H+ L +  RA+  I   S A Y+  TS  T        T     GG+   NL   P+N P P
Sbjct:  431 DRVSVFEQIYARNAW---QSPESRSGPGSMLERTGILRRELPPLLTRLGVRTLVDAPCGDCNWR--QHTAIDLDAYIGVDIVPALIEENRRRF-PHPNWRFEVADLVE----------DDLPRG-DAVLCRDVLIHLSLADILRALSNI-RRSRAKYLLATSHETTSINTDIAT-----GGWRSVNLTLAPFNLPPP 604          
The following BLAST results are available for this feature:
BLAST of NO16G00340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OLP86696.19.300e-4037.97Integral membrane protein [Symbiodinium microadria... [more]
WP_011381501.11.800e-1434.29hypothetical protein [Nitrosospira multiformis] >A... [more]
WP_074774459.11.800e-1434.29hypothetical protein [Nitrosospira multiformis] >S... [more]
XP_016612374.13.900e-1431.53hypothetical protein SPPG_00066 [Spizellomyces pun... [more]
WP_074703759.12.500e-1335.03methyltransferase domain-containing protein [Nitro... [more]
WP_107762824.14.300e-1334.52hypothetical protein [Nitrosospira multiformis] >P... [more]
XP_002297201.19.700e-1334.81predicted protein [Thalassiosira pseudonana CCMP13... [more]
ODT78013.12.800e-1233.50hypothetical protein ABS69_08250 [Nitrosomonadales... [more]
WP_081363554.13.700e-1234.01hypothetical protein [Nitrosospira multiformis] >S... [more]
WP_074744770.13.100e-1133.50methyltransferase domain-containing protein [Nitro... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00340.1NO16G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593095gene_5911Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00340.1NO16G00340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00340 ID=NO16G00340|Name=NO16G00340|organism=Nannochloropsis oceanica|type=gene|length=975bp
ATGGCAGCATCTCCTTACAGGCAGTGGCCTCGGAGACACGTCTTCAAAAT
TCTGAATGGCCACAAAAACACCTTAGTATTCGCAGCAGGATTCTTGATCG
CCCTGCTCGTATTGAAGCTTGACCGCACCTATGACGCATCTAAAGACCAG
AAAGGTTCCATTCCTTCACACGCCACTTCTACACTACTTGCTGTGCCATC
AGATGAACAAGCGTGCCGTGTGCAGCTCGGATCTCGCTGCAGTGCGGGCC
GACACGACGTCGCCAATCGGTTTACGAATATCTACAAGTCTGCTGATTGG
GGGACTTCGCCGTCTTCTCATACCCGTAGTGGCTCCGGAAGCACGATTAC
AGGAGCTTTTGAAACGATCACCAAGCTCGAGCCTAAATTTCGCGAACTTA
ATATCACTGCCATAGCGGACGTGCCTTCGGGAGATTGTGGCTGGCAGTTT
GCTTTGAGCACCATAAATGCGGCAGACGCCTATTTCGGCGGAGACATTAC
GCCGCATGTAGCGCAAGAAAATGCGCAAATTTTTCACAACCATCTGAATA
AAGTATTTGCCTTCTGGGATCTGGTAGAGTGTCCCATTCCTCAGTGGTAC
ACCACATGCGATTCCACGCCGCGGCCCTTTGATATCGTGATTGTGAGGGA
TGTCATTCAGCATATGAGGTTGAACAATGCGGCAAGGGCCATCAAATTGA
TAGTGGAGGAATCAGGTGCCAGCTACATGGCTGTGACCTCCTTCTCTACA
GAGAGATGTACCGACCAGTGCTTGACTGCCCTCCAATCCGACGGAGGCTT
CTACCACAACAATTTGCACTGTCCACCGTGGAATTTCCCTGAACCATTCT
ATAGCTTCCCTAGTCACGACAACTTCCCCGAGGAGGCCGACCATATGGAA
TTGTATCGTGTTGACGACCTGAAGACTATAGTGGCCAATTGGCAGGAGCC
ACCTTGCGCGGTAGCCTCGAAGTGA
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protein sequence of NO16G00340.1

>NO16G00340.1-protein ID=NO16G00340.1-protein|Name=NO16G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MAASPYRQWPRRHVFKILNGHKNTLVFAAGFLIALLVLKLDRTYDASKDQ
KGSIPSHATSTLLAVPSDEQACRVQLGSRCSAGRHDVANRFTNIYKSADW
GTSPSSHTRSGSGSTITGAFETITKLEPKFRELNITAIADVPSGDCGWQF
ALSTINAADAYFGGDITPHVAQENAQIFHNHLNKVFAFWDLVECPIPQWY
TTCDSTPRPFDIVIVRDVIQHMRLNNAARAIKLIVEESGASYMAVTSFST
ERCTDQCLTALQSDGGFYHNNLHCPPWNFPEPFYSFPSHDNFPEEADHME
LYRVDDLKTIVANWQEPPCAVASK*
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Synonyms
Publications