NO16G00300, NO16G00300 (gene) Nannochloropsis oceanica

Overview
NameNO16G00300
Unique NameNO16G00300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length929
Alignment locationchr16:113237..114165 +

Link to JBrowse

Properties
Property NameValue
DescriptionHistone-like transcription factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:113237..114165 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
Homology
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BLAST of NO16G00300 vs. NCBI_GenBank
Match: EWM24094.1 (Histone-like transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 82.4 bits (202), Expect = 1.900e-12
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 0 
Query:    6 STHILRDQIGLAFAPVEKAIHTVAKAQGLRVTKPACDLVNALLSDFILQLCHAGNTLEVKKKVISAECIEKGLKKL 82
            +T  LRD+IGL FAPVE+AI  VA     RVTKPA DL+NALLS+FILQLCH G+    KK+V++   +   L+ L
Sbjct:    5 TTAPLRDEIGLPFAPVERAIEAVAAQHNFRVTKPAGDLINALLSEFILQLCHQGSVSASKKRVVNEVHVRTALETL 80
The following BLAST results are available for this feature:
BLAST of NO16G00300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24094.11.900e-1255.26Histone-like transcription factor [Nannochloropsis... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00300.1NO16G00300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671602gene_5906Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101271g1gene6376Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00300.1NO16G00300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00300 ID=NO16G00300|Name=NO16G00300|organism=Nannochloropsis oceanica|type=gene|length=929bp
CAGCCCCTAATCAACAGATGTATATCAATTAGACACGAGCCATGTCGAAT
CCGCCGTCAACTCACATTTTACGGGACCAAATCGGCCTGGCATTTGCCCC
CGTCGAGAAGGCCATACACACCGTGGCGAAGGCGCAAGGCCTGCGCGTCA
CCAAACCCGCCTGCGACCTGGTGAATGCCTTGTTGAGCGgtaagtgagtt
aaaatgagagggagggtacgaaggcgaggagggtgataaagaaggtagag
aggtggatgcaagtatgtgactgaatccgcaggacatcattctttccttc
ccttccccccctccccccctccagACTTCATTCTCCAGCTATGCCATGCG
GGAAACACATTGGAAGTGAAAAAGAAGGTCATCAGCGCAGAATGTATCGA
AAAGGGACTGAAGAAGCTATCTGGGCATTTATCGTTGTCAACAAAAAAGG
AGGAGGAGGTAGAGGATGAGGAAGAGGAGGACGACGAAGGCGAGGAGGGA
GGGCGGGCGAAGAAGAAACCTGCCGCCCCTAAGAGAAGTTCCTCCAAAAA
GGAAGCCGAAAGAGAAACAGGGAAAGGGGGAGGAGGTGGGGGAGGAAGAA
AGAGGAAAGGGAGCGGTCCGAAGACTAAGGAAGACGTGTTGACAGGAGGG
AAAAGTGGGGGGGTTAAGCCAACAGCGAAGAAGCGTCGGCGAAAAAAGAT
GAGTGCAGAGGAGGAGGCGGCATTAATGCGCGAACAAGAGGCAATCTTTG
CACGGCATGCGGCCAAGGCGGTGGAGGGGGGAGAGAGAGGAGGAGGAGGT
GTAGGGGGGAGGTTGTGAAAATCATTGGGTTGAGGCGGAGGAAGGGACTT
CGAAATGTACAATAGCAACAACAACACATGCAGAGGCATTCGAATCAAAG
ACGAACAAAATTGAAAGAAATGTGCGCCG
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protein sequence of NO16G00300.1

>NO16G00300.1-protein ID=NO16G00300.1-protein|Name=NO16G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MSNPPSTHILRDQIGLAFAPVEKAIHTVAKAQGLRVTKPACDLVNALLSD
FILQLCHAGNTLEVKKKVISAECIEKGLKKLSGHLSLSTKKEEEVEDEEE
EDDEGEEGGRAKKKPAAPKRSSSKKEAERETGKGGGGGGGRKRKGSGPKT
KEDVLTGGKSGGVKPTAKKRRRKKMSAEEEAALMREQEAIFARHAAKAVE
GGERGGGGVGGRL*
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Synonyms
Publications