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Properties
| Property Name | Value |
|---|
| Description | RAP domain protein |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr16 | genome | chr16:14442..21379 - |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO16G00050 vs. NCBI_GenBank
Match: EWM22830.1 (RAP domain protein [Nannochloropsis gaditana]) HSP 1 Score: 420.2 bits (1079), Expect = 2.000e-113 Identity = 244/386 (63.21%), Postives = 273/386 (70.73%), Query Frame = 0
Query: 763 MGPPVEAEDLFRRLLGAAIARLGSSS---SEAFSALSSRKGLGREVDCQDGDCNPVSVHAIRQLRQVARFVCVVLGWEGVQAAVGGSVEADMLAEPEQATSSSLLHLEVLRLLCRDLAAHDARTEVDDGVYVQDIVLMPKRGSSGSTDPSLPAPLPVIVEVDGPPHFFNNMPRCSRGDHKLKKRILHAQTGHNNGGVVSVTWWEWVSRTRTQRTRMMVRKMVEVGVIDPSLYLGGVASLSWEEDVEEEEQDFEDXXXXXXXXXXXXXXXXXXXXXXXXXXRGPSGSGVIQAKTLSLLQRKQHKPQSMITWGKESGGPLNISPT----PLQSSTPRIESEEESYLWSLTVLQLKDRLREKAMPVSGVKAALVARLMEAPVMEAEGRK 1142
MGPPVEAE LFRRLLG+AIARLGS S S A SA SS G GR VDC+DGDCN V VHA+RQLRQVARFV VVLGWEGV+ AVGGS EAD L EPEQ T+SSLLH+ EVDDGVYVQDIVLMPK SLP PLPVIVEVDGPPHFFNN+PR SRGDHKLK RIL AQTG NGGVVSVTWWEWV RTR QRTRMMVRK+VEVGV DPSLYL GVA+LS EE+ EEE ++F + XXXXX + G+IQAK SLLQ+KQ +PQSMI WG+E GG + +P+ L+ RIES+EES+LWSLTV +LK +LREK +PVSGVKAALV+RLM+ EG K
Sbjct: 1 MGPPVEAEGLFRRLLGSAIARLGSPSTSLSAASSAGSSLAGKGRAVDCEDGDCNVVPVHALRQLRQVARFVEVVLGWEGVEMAVGGSPEADKLDEPEQPTASSLLHM-----------------EVDDGVYVQDIVLMPKAAGGLGAKHSLPPPLPVIVEVDGPPHFFNNVPRRSRGDHKLKARILEAQTGKKNGGVVSVTWWEWVCRTRRQRTRMMVRKLVEVGVTDPSLYLRGVAALSSEEEGEEENEEFVEALSFEGEDDEGEWMSYSDDXXXXXSE--AAAGGLIQAKARSLLQQKQERPQSMIIWGREDGGHVYNAPSSARLSLEGLGARIESDEESFLWSLTVPELKAKLREKCLPVSGVKAALVSRLMDILEAVEEGGK 367
BLAST of NO16G00050 vs. NCBI_GenBank
Match: EWM22826.1 (hypothetical protein Naga_100491g4 [Nannochloropsis gaditana]) HSP 1 Score: 100.9 bits (250), Expect = 2.700e-17 Identity = 60/100 (60.00%), Postives = 71/100 (71.00%), Query Frame = 0
Query: 189 RPFSPTTGWLDPLSLSPASLAAAIHGLVKEITTMPRGAGPGPAEAAAKAAYQRKAWERQRYMERELSALLAVAERNLPSLTPEAVSTVINALSKLHPRAL 289
RP P+ G LD SLSPASLAAAIH +V+E+TT P+G G EAAAK Q+K ME+EL ALLAVAERN L+PEAV+T+INALSKL PR +
Sbjct: 184 RPSPPSNGRLDSSSLSPASLAAAIHQIVRELTTPPKGPGAALPEAAAKRLKQKK------LMEKELGALLAVAERNAGYLSPEAVTTIINALSKLPPRCV 277
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO16G00050 ID=NO16G00050|Name=NO16G00050|organism=Nannochloropsis oceanica|type=gene|length=6938bp
ATGGTTGTCAGGGCCAGGCAACGAGAGCCCAAGCCTGCTCACCCGCACCA
CCAGCTCCTGACGTGGTTATCCCTCTTCGCCGTTCTAAACCTCGGAGTGC
ACGCCTTTGTCCTCCCGTCGGTGTCGTCAATAGCCGCATCAAGACGGAGG
GTACGTGCCACAGCATCACATCTTCCTGCATACCGCGATTCCTTCAGTCA
GGGGGACCGGGGAGGCAGCCGCAGCGGTAGCAGCAGCAGCAGCAACAGCC
AAGGCGACGAGGATGAAAGCCCGAAAAAGAGGAAGCTCGCCAAAGCCCCC
CACAGCAGCAGCAGCAGCAGTAGCAGTGATCCAGCCTCTATACTCAGCAA
AGATTCAGATGCATGGGATTCAAGCGTTCTTCGGACTCCGCCGTCTTCCG
CCCTCAAGCCGCACCACCGACAAGTGGCAAGTGCAGCTGCTGCGGGCCCT
TCCTCCTTCACTTATTCCTCTTCCCCCTCTCGTACGTCAGTACCACCAGT
CCCACCGTCAGCAGATGCCTCGTCTTTTGCCTCCTCCTCCTCGGCTAATG
CTGGGTTAGGGCAGCGgtacgtccgtccacacgatgaggagcaacgggga
gatgcaccaaacattcatgttcacattccttccttcctccctccctcctt
cccttcctattttcgtccctacagCCCATTCTCTCCCACGACCGGGTGGC
TCGATCCCCTTTCCCTCTCTCCCGCTTCGTTGGCCGCGGCCATTCACGGG
CTCGTCAAGgtccgtttttctttctgttcttctctccctccctccctatc
ttcctccctcctccctcctttctggtctatgctcctttttgttgttgtat
cttcttttcccgtcttttctcctttctgccactctcgtgtcttacactcg
tacccctcgcccacatcctgcttccctcctcctgccgtctcctccccccc
ccacccaagGAAATAACAACCATGCCTAGAGGAGCAGGTCCCGGCCCGGC
GGAAGCAGCGGCCAAAGCAGCCTACCAGAGGAAGGCCTGGGAGCGACAAC
GGgtaaggagatggaagaggggatggatagggaagggatgagagagataa
gggtgtgttgggacaagttttttgtgtaggttgtgcatgcttagtacctc
ccttccgccgtcctctctccctccctccagTACATGGAGCGGGAACTGAG
CGCGCTCTTGGCAGTGGCTGAGCGTAACTTGCCTTCCCTTACGCCCGAGG
CCGTTTCGACAGTCATAAATGCCCTATCCAAGCTGCACCCACGgtgaggg
agggagggagggagggagggagggagggagggagggagggagggagggag
ggagggagggtgaggggggagtttgggttgtcgcgctcgatgggttgtcg
cgctcgaagagctctcacctcaggtatttccactcacattttccccctcc
tcccctcttccccttcctctcttcccagCGCTCTCCGGAACGTGGTGCCT
CTGTCATCGTCTTACCGGCTGAGCGGAAAGCCTCAGCAGCAGCAGCAGCA
ACAACAACAGCAGGAGGAGGGGGTAGGAGGGAATCATGTGGCAGGCGTGT
TCGCGGCGACGACCAACGAGGAGgtaaatagggaaagaagagtaaaatgg
aattattgggggatggaacgacgaagggagggaaggagggagggagggag
ggagggagggagggaaggagggaaggagggagggagggagggagggactg
ggcacatgggtgggagaggaaagcgagcatggtgggtggtacacagcttc
actcactgagcctagaggtgataaggctctaaggcgagagatatttaggc
tttaaggctagaggtaatttgatttaaaggctaaaggtaattaggtttaa
aggctagaggttgttaatctctcggtcttgcttcatttgctgcatgctca
tcttcctgtctttccacagctcaggaacgattccttctcgtccgtctctc
tttcccgtcactcacttacacagCAGCAGCAGCATCAGCAGCGGCTCTCC
ACGACTCCCACCGCCGCATTTCTGCCCAGCCTCTTGACCCGTGCCTTGGA
ACTCGTCAATTACATGAGCCCACGgtatttcccgccgtcccctttctccc
ttcctccttccttcctccttccttcccttcttttgtgatttaagcttagc
ctccctccctccctcgttccctttctagATGCATCGCCACGACTGTGAAT
TCTCTGGCGCGGCTTGTTTCGTCCGTGGCACCTTTTGCCCTGCCCTTGCC
GCCTCAGCTCCTCTCGGGGCTCACTGCGCAGgtgagggaggaaagaggag
aggggcaggggatggacggacagagaagggaaaaaaggatggaatggtga
aggctggctgactgactgactcactcgttttctactctctctctctctct
ctctctctctctctctctctctctctgtctcggtctctctctctctctgc
agGCGCAAAGACTCTTCTTGGTTCAGCAAGAGCGACGAGTGGGAGAGATG
GATGCAGGGCGAGCGAGCAGCAGCAGCAGCAGCAGCAGCGGTTACCAGGC
CAAGGAGCGCTTCACGCCGCAGGGTCTCGCCAACATTATCAACGGCTATG
CTCGCCTCGgtgcgccttccactcccactcaccacctcattattttttgt
gcctgctgtctctgcgtcggtgtcgtcgtcctccctcttgttctttcttg
gatcgccctcttcgttcctctatctcaccttccttccctccctcccgccc
tcctttcctcgctcagGCTTCCATCCGGGCCGGAAATTTTTGGAGCTGTT
TTGTGAGGAGCAACTCACCATGATAGACGACGTTGGACCGCAGgtaggga
ggaaaggagagcggaaggaagggagggaaggagagcggaaggatgcagag
gctgcgtgtcagtgtcggtgccaccacatccacgtccctctccctccctc
cctcccttcctcccttcccctttcagACTCTGGCCAACACGATGAATGCC
CTGGGCAAGCTCGGCTTCCATCCTGGGATCGCCTTCCTGGAGCGCATGGC
CGCCCGCGCCCACGACACTCTCCCGCACTTCAACACCCAGgcatgtccct
tccctccctccctccctccctccctcccccctgccctcctttcccccttt
ctggatgctcgtgatggcctccaaccacgtccttgtgcgcgaagctcacg
cacctcacccctccatccccatccctcccgtcctccgtccctcagGGTCT
CTCCAACCTCCTCAACGGTTTCGCTCGCCTCTCTCCTCCCTTCCACCCCG
GCCCGGCCTTTCTAGAGGCCCTCAAAGACGCTTCTCTTCCCTGCCTGCCT
GCTTTCGAGTCGAGAGGGCTAGCGGCCCTGGCACATGGgtaaagcattca
ttctcctccgccttctcaccctcgtttcctcccccctcgtttcctccctc
cctccttccctttctcgctcctagcgcactcatccgtctcttccctcctt
tcctgcctgtctccctctgtcccttcctcccggccctccagTTTCTCCAC
GCTAGGGCACCATCCTGGCAACGACTACCTCGATGCCCTGGGGGAGGCCA
TGGCCTGCCGCCTCGAACGCGCCACGCAAGGACGgtgcgtcctccctccc
tccccctttcgaccctacttttcccgtcctctcacccgcaaatccctttg
tctcccctcccctcccgccttcttcttctccagCGAGGGCATGACGGGCT
GGACGCTCTCAACGCTTTACAATGGCCTCGCCCGCCTTGACTGGCACCCG
GGGGTGGAGCCCCTCGGCGGCAAGTGGAAAGAGgtatatctgtccgctcc
ccctcccttccctccctccctcctctcccctcccatctttcccaaagatc
aagggctgggcctagactgcctcttccacccatacatccttacctttccc
cccctccctccctccctccctccctccctcccttcttccctccctccctc
tctctcagTCTACGAGCTGGGACCAAAATACTCCCGCTCCTCCTCCTCCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTGGTGGTGGTGG
TGGTAGTGCTGGTGGTAGTGCTGGTGGTAGTGGTGTGGGGGGTCGCAGCG
CTTCCTCTCTGACTGACTCCGCCCGGGCCAGCGCCGACCTCTCAGGCATG
GGCTGGCGCATGCCCTCCTCGTCCCCTTCCTCGCCTTCAAACGGAGACGG
TGGGGACGGACGAAGGGAAGGGGAGATCCCGACGGGCATGCGGCTGTGGC
AAGCAACGGCGTCCTGGCTCGTGGCGCAGGGGCAGGACGAGATGATGTGG
GGGGACGTCCTCGAGCCGCAGCAGCTGACACAGgtaggagagtgaggaag
ggaaggaaggaggagaatgaaagagaatcagcaagctttcagcatccccc
tccccgacctaatatatctcacaccaagctcatcacctccctgcctccct
ccctccccccctccctccctccctccctccctccctccctccctccctct
ccacagCTTCTTTGGTCCTTGGCCGCCATGGGCCCGCCCGTGGAAGCCGA
AGACCTCTTCCGCCGCCTGCTGGGAGCTGCCATTGCCCGCCTCGGCTCCT
CCTCCAGCGAAGCTTTTTCCGCCTTGTCCTCGCGGAAGGGGTTGGGCAGG
GAGGTGGACTGCCAGGACGGAGACTGCAACCCGGTTTCAGTGCATGCCAT
CCGACAACTGCGACAGgcacgaaggggggggggtggaagagggagggagg
gagatgaaagggaaggaagaggggttgagcaggtaatgggaggaagtcgc
tggatgaaaatatggccaggatcatgcatcgctcactgtactctgttcct
cacattttccctcccctctcctcccgtcctcttttcaacttcttcccgcc
tcctcagGTGGCGCGCTTCGTGTGCGTGGTGCTGGGCTGGGAAGGAGTGC
AGGCGGCGGTTGGCGGCTCCGTGGAAGCCGACATGCTGGCCGAGCCCGAG
CAAGCCACCTCGTCCTCGCTCTTGCACCTGgtgagggaaaagggggagag
gaagggaggaaggaaggggggaaacgaaagaggaaacgagggaggatgta
ggcatctatctcgtctgatatcttcttccgcccgcatttcttgacagGAG
GTGCTACGTCTTCTCTGCCGGGACTTGGCTGCTCATGACGCGCGGACAgt
aagtcctccctttctccctccttctctcgctccatctcccgccctctttt
tccctttccacccttccccttcccttttcctgccttccttttctcatttc
ttcccgcctccctccctggctcactctaaattcctgacagGAGGTGGACG
ACGGTGTGTACGTGCAAGACATAGTCCTCATGCCCAAGAGGGGCAGCAGC
GGCAGCACCGACCCCTCCCTCCCTGCCCCCCTCCCCGTCATCGTGGAGGT
GGACGGGCCTCCCCACTTCTTCAACAACATGCCTCGCTGTTCTCGCGGCG
ACCACAAGCTCAAGgtaggtagggagggagggagggagggagggagggag
agagggagggagggaaggagagagggagggagggaaggagagagggaggg
agggagggagggagggaaggagggagggagggagggagggagggagggag
ggaaggagggagggagggagggagggagggagggagggagggagggaggg
agggagggaaggagggagggagggagggagggagggaaggagggagggag
ggagggagggagggagggaggagggagggagggagggagggagggagggg
agggaggggggagggagggagggagggagggagggagtggggtaatatga
gcatgtggaagcaaagcagtagcactcatctctcctcttttcctgcctcc
ctccctcccttccttccttcctagAAACGCATCTTGCACGCCCAGACGGG
TCACAACAACGGAGGCGTCGTGAGTGTGACGTGGTGGGAGTGGGTGAGTC
GCACGCGCACGCAGCGGACGCGGATGATGGTGCGGAAGATGGTGGAGGTC
GGCGTGATTGACCCCTCGCTGTACCTCGGGGGCGTGGCGTCGCTGTCGTG
GGAAGgtgagggagggagggagggaggaagggagggaatgactggagggg
ggagagatttctatgaatcattctggatatagagggttcgtcgctcattc
actcacgcacttgtcttccttccctcctcccctcttttttcccgtccctc
tttccctccacagAGGATGTAGAAGAAGAGGAGCAAGATTTTGAGGATTC
CATGACCTTCGACGAGGAGGAGGAGGAGGATGAGGAGTGGATGAGgtgag
attccgaagatggaagagggagaaggagggagttcatgactcgagaaaag
tgtgacaaggaaagccagaagctccattcgagtcaattcccattttctgt
cccccttccaacccctccttccaccctcccatctagCGACGAAAGTGAGG
AAGACCAAGACGAGGCGCGGGGTCCGAGTGGCAGCGGCGTGATTCAAGCC
AAGACCCTCTCCCTTCTCCAGCGGAAGCAGCACAAGCCCCAGTCCATGAT
CACGTGGGGCAAGGAAAGCGGCGGGCCTCTCAACATCTCACCTACTCCTC
TCCAGTCATCCACCCCCAGGATCGAGAGCGAGGAGGAGTCATACCTGTGG
TCGCTGACGGTGCTGCAGTTGAAGGACCGGCTGAGGGAAAAAGCTATGCC
CGTTTCGGGGGTCAAGGCCGCCTTGGTTGCGCGGCTGATGGAGGCGCCGG
TGATGGAGGCAGAAGGGAGGAAGGATGCACCACGGTAG back to topprotein sequence of NO16G00050.1 >NO16G00050.1-protein ID=NO16G00050.1-protein|Name=NO16G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1146bp
MVVRARQREPKPAHPHHQLLTWLSLFAVLNLGVHAFVLPSVSSIAASRRR
VRATASHLPAYRDSFSQGDRGGSRSGSSSSSNSQGDEDESPKKRKLAKAP
HSSSSSSSSDPASILSKDSDAWDSSVLRTPPSSALKPHHRQVASAAAAGP
SSFTYSSSPSRTSVPPVPPSADASSFASSSSANAGLGQRPFSPTTGWLDP
LSLSPASLAAAIHGLVKEITTMPRGAGPGPAEAAAKAAYQRKAWERQRYM
ERELSALLAVAERNLPSLTPEAVSTVINALSKLHPRALRNVVPLSSSYRL
SGKPQQQQQQQQQQEEGVGGNHVAGVFAATTNEEQQQHQQRLSTTPTAAF
LPSLLTRALELVNYMSPRCIATTVNSLARLVSSVAPFALPLPPQLLSGLT
AQAQRLFLVQQERRVGEMDAGRASSSSSSSSGYQAKERFTPQGLANIING
YARLGFHPGRKFLELFCEEQLTMIDDVGPQTLANTMNALGKLGFHPGIAF
LERMAARAHDTLPHFNTQGLSNLLNGFARLSPPFHPGPAFLEALKDASLP
CLPAFESRGLAALAHGFSTLGHHPGNDYLDALGEAMACRLERATQGREGM
TGWTLSTLYNGLARLDWHPGVEPLGGKWKESTSWDQNTPAPPPPAAAAAA
AAAAAAGGGGGGSAGGSAGGSGVGGRSASSLTDSARASADLSGMGWRMPS
SSPSSPSNGDGGDGRREGEIPTGMRLWQATASWLVAQGQDEMMWGDVLEP
QQLTQLLWSLAAMGPPVEAEDLFRRLLGAAIARLGSSSSEAFSALSSRKG
LGREVDCQDGDCNPVSVHAIRQLRQVARFVCVVLGWEGVQAAVGGSVEAD
MLAEPEQATSSSLLHLEVLRLLCRDLAAHDARTEVDDGVYVQDIVLMPKR
GSSGSTDPSLPAPLPVIVEVDGPPHFFNNMPRCSRGDHKLKKRILHAQTG
HNNGGVVSVTWWEWVSRTRTQRTRMMVRKMVEVGVIDPSLYLGGVASLSW
EEDVEEEEQDFEDSMTFDEEEEEDEEWMSDESEEDQDEARGPSGSGVIQA
KTLSLLQRKQHKPQSMITWGKESGGPLNISPTPLQSSTPRIESEEESYLW
SLTVLQLKDRLREKAMPVSGVKAALVARLMEAPVMEAEGRKDAPR* back to top
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