NO15G03390, NO15G03390 (gene) Nannochloropsis oceanica

Overview
NameNO15G03390
Unique NameNO15G03390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length531
Alignment locationchr15:982774..983304 +

Link to JBrowse

Properties
Property NameValue
DescriptionNAD(P)-binding domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:982774..983304 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G03390 vs. NCBI_GenBank
Match: EWM22245.1 (NAD(P)-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 102.8 bits (255), Expect = 1.100e-18
Identity = 50/90 (55.56%), Postives = 58/90 (64.44%), Query Frame = 0 
Query:   72 QSMNDDALWPYKILFRREGRPDLVPLEPKLHRLAAIVFVAVASLLGVGLGAGLWKMGEEAARWMRAGKTPPRGLVSAMEKGSPWR-DGIG 161
            + MN+D LW YKIL RREGRPD+ PL PKLHRL   +FV   S LGVGLGAGLWK G    RW+R    PP+  + A  +G  W   GIG
Sbjct:  393 RGMNNDPLWSYKILLRREGRPDVTPLSPKLHRLGVCIFVTAVSSLGVGLGAGLWKGGHALGRWLRQRALPPQEGIPATMRGGCWSLAGIG 482
The following BLAST results are available for this feature:
BLAST of NO15G03390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22245.11.100e-1855.56NAD(P)-binding domain protein [Nannochloropsis gad... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G03390.1NO15G03390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G03390.1NO15G03390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G03390 ID=NO15G03390|Name=NO15G03390|organism=Nannochloropsis oceanica|type=gene|length=531bp
ATGACTCTGTCAGTTGCGGGGGTGGGGACGAAGGAGGAAAAGAGGCGGAG
GAAGAAAGATGAGAGGGTAATGATGAAGAGCATTGACGGCCCGGCGACCA
TGGGTATCGAAACCCGGCGTAGCAGCACCCTCGACAAGAACGGCAAACCC
TCCGCCTCCTCATTTTCCTCCTCCTCCTCGTCCTCCTCCGTCTCTCCACC
TTCACGTGCCGTCCAGAGCATGAACGACGACGCCCTGTGGCCTTATAAGA
TCCTCTTCCGCCGTGAAGGGCGACCGGACCTCGTCCCCCTTGAACCCAAG
CTCCATCGTCTGGCCGCAATAGTCTTCGTGGCGGTCGCGTCCCTCTTGGG
GGTGGGTCTAGGGGCAGGCCTGTGGAAGATGGGAGAGGAGGCAGCGCGAT
GGATGAGAGCAGGGAAGACACCACCAAGAGGGTTGGTTTCGGCGATGGAG
AAGGGTAGCCCTTGGAGAGATGGGATAGGAAGAGGGGGTGGAGAAGGAGG
AAGAGGGGTGGAAGGGTGGAAAAATATGTAA
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protein sequence of NO15G03390.1

>NO15G03390.1-protein ID=NO15G03390.1-protein|Name=NO15G03390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MTLSVAGVGTKEEKRRRKKDERVMMKSIDGPATMGIETRRSSTLDKNGKP
SASSFSSSSSSSSVSPPSRAVQSMNDDALWPYKILFRREGRPDLVPLEPK
LHRLAAIVFVAVASLLGVGLGAGLWKMGEEAARWMRAGKTPPRGLVSAME
KGSPWRDGIGRGGGEGGRGVEGWKNM*
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Synonyms
Publications