NO15G03350, NO15G03350 (gene) Nannochloropsis oceanica

Overview
NameNO15G03350
Unique NameNO15G03350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1344
Alignment locationchr15:974242..975585 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:974242..975585 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G03350 vs. NCBI_GenBank
Match: EWM22260.1 (hypothetical protein Naga_100376g6 [Nannochloropsis gaditana])

HSP 1 Score: 146.4 bits (368), Expect = 1.600e-31
Identity = 96/204 (47.06%), Postives = 125/204 (61.27%), Query Frame = 0 
Query:  119 LLPKVESVAAKEKEVVTQSQEEYAKLEAAKEVARNEGLYTTXXXXXXXXXXXXXXXXXXXXXXXXVLEIWPEKKDVVQLISMVERAGTLNGVSLIKGGAVARLQSAADRGKSCKVPKKVSDLWVEAKSQRPKDIKTRAEAQMLRMDFGKGKLGEGG---RATNSGGDGSTAAKKGTPKLVRMFDKLTVDVPTSPVVQPQQPQQV 320
            L  KV+  A K K VVT   +E  KL+ A + A  E                              +E+WPEK+D+VQL+SMVE+AG+++G+SL +GGA+ARLQSAADRG SC V KK +DL  EA+++RPKDIKTRA AQ++R++ GK +  EGG   R  +S GD     KK T  LVR  ++L VDVP SPVVQPQ  QQ+
Sbjct:   27 LKQKVQPAATKGKGVVTGKLKEDEKLKWASDNASGE----PKTRGKKKKIRQNGEKEAPSKEKDETVEVWPEKEDIVQLVSMVEQAGSIHGISLKRGGAIARLQSAADRGTSCIVSKKAADLLREARTRRPKDIKTRAVAQVIRLEHGKKEEFEGGKISRDASSAGD----KKKATLTLVRDLNRLAVDVPLSPVVQPQYAQQM 222
The following BLAST results are available for this feature:
BLAST of NO15G03350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22260.11.600e-3147.06hypothetical protein Naga_100376g6 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G03350.1NO15G03350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|447125gene_4899Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100376g6gene8183Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G03350.1NO15G03350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G03350 ID=NO15G03350|Name=NO15G03350|organism=Nannochloropsis oceanica|type=gene|length=1344bp
CGTCTTCTTGTTATTTCTTTTTTTTCTCCTGTTTCCTGTATGCTCCCAAA
CGCAGCGAGTTTACCCCCCACCCTTTTACACATGACGTCCAGGCACCTGC
ATGCTCACCAAAAAATGTTCTGCTTGGCGATATTACGACGCCTTCAAGCG
TCTTGCATCTATCTCGAACGCAACGTATGGTTTGTATGTTGCGAGCCTTT
GCAAACCGTTCACTACCATCGCCTCCCCACTCCACAGCGACACAAAAGCA
CCACGTTACCACAACAACAAACATGTCAGAACACGAACTCCGCATCGCCA
CCGAGGAGCAAGAGAACATTCAATCTGGGAGGACCGCCGGAGCCAAGAAG
CAGGGTAAGAAGAGCAAGGCCAAGCCTGTCGCGGCGACGGACATGGAGTC
GGTCCTGCAAGCAGGGAAGCATGTAGTGCCCTTGACCAGGAAGGATGCGG
CAGTCCTGCAGAGCATGGAGGCCCACGGCAAGTCGGGTCAAGGGACTAAA
ATGTCGACGAAGAAGAGGGAAGAAGGGGGCTTGTTGCCCAAGGTTGAGAG
CGTTGCGGCCAAGGAAAAAGAGGTGGTGACGCAGAGCCAGGAAGAGTACG
CGAAATTGGAAGCAGCGAAGGAGGTAGCGAGAAATGAGGGGCTGTACACC
ACGCGCGGAGAGAAGAAAAAGAAGAAGAAGAAGAAGGAGCAGCAACAGCG
GCCATTCGCTGGAGGACAGGAGGAAGTGTTAGAGATTTGGCCCGAAAAAA
AAGATGTCGTGCAATTGATTAGCATGGTGGAACGCGCTGGTACCCTAAAT
GGCGTGTCCCTGATTAAAGGTGGGGCTGTGGCGCGATTGCAAAGTGCGGC
CGATCGGGGAAAATCGTGTAAGGTGCCAAAGAAGGTATCGGATCTTTGGG
TGGAAGCCAAGTCGCAGCGGCCCAAGGATATTAAGACGCGGGCCGAGGCG
CAGATGCTGCGAATGGATTTCGGGAAGGGCAAGCTGGGAGAGGGAGGGAG
GGCTACCAACAGCGGCGGAGACGGCAGCACTGCAGCGAAGAAAGGCACAC
CGAAGCTTGTGCGGATGTTTGACAAATTGACGGTAGATGTACCCACGTCG
CCTGTGGTACAGCCGCAGCAGCCGCAGCAGGTGGAGATGAGGCCGTCGGA
AGGAGAGTGGGAGGAGGGTTAAATGATGAGAGAAGAAATATGGAAGCGAA
TAAATAACGGAAGAAGAGACAGTACCCTAGAGGAAACGGGCTTCGAAATA
GATTGAGAATATGATAGAATAAAAGACAAAAGGTGGTGAGAGCGGGGGAG
GTAGAGAGACGTATGACAGCAATTTATAAGGAAGAGGACCGGGA
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protein sequence of NO15G03350.1

>NO15G03350.1-protein ID=NO15G03350.1-protein|Name=NO15G03350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MVCMLRAFANRSLPSPPHSTATQKHHVTTTTNMSEHELRIATEEQENIQS
GRTAGAKKQGKKSKAKPVAATDMESVLQAGKHVVPLTRKDAAVLQSMEAH
GKSGQGTKMSTKKREEGGLLPKVESVAAKEKEVVTQSQEEYAKLEAAKEV
ARNEGLYTTRGEKKKKKKKKEQQQRPFAGGQEEVLEIWPEKKDVVQLISM
VERAGTLNGVSLIKGGAVARLQSAADRGKSCKVPKKVSDLWVEAKSQRPK
DIKTRAEAQMLRMDFGKGKLGEGGRATNSGGDGSTAAKKGTPKLVRMFDK
LTVDVPTSPVVQPQQPQQVEMRPSEGEWEEG*
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Synonyms
Publications