NO15G03280, NO15G03280 (gene) Nannochloropsis oceanica

Overview
NameNO15G03280
Unique NameNO15G03280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1039
Alignment locationchr15:957893..958931 -

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Properties
Property NameValue
Description50s ribosomal protein l17
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:957893..958931 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0016020membrane
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR036373Ribosomal_L17_sf
IPR000456Ribosomal_L17
Homology
BLAST of NO15G03280 vs. NCBI_GenBank
Match: EWM22269.1 (50s ribosomal protein l17 [Nannochloropsis gaditana])

HSP 1 Score: 301.2 bits (770), Expect = 2.100e-78
Identity = 156/173 (90.17%), Postives = 163/173 (94.22%), Query Frame = 0
Query:    1 MASRSLFFLAAAVVLCLANAFMLPSPLPLRAGSSARVLSTEDMSFDFGGRAKGGMEMMRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 174
            MASR  FFLAAA+V C  NAFMLPSPLPLRAG+S+RVLS E++S DFGGR+KG M+MMRHGKRFKKLG  ADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV
Sbjct:   41 MASRLFFFLAAALVFCGVNAFMLPSPLPLRAGASSRVLSVEEVS-DFGGRSKGSMDMMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212          
BLAST of NO15G03280 vs. NCBI_GenBank
Match: EJK74655.1 (hypothetical protein THAOC_03655 [Thalassiosira oceanica])

HSP 1 Score: 191.0 bits (484), Expect = 3.000e-45
Identity = 94/119 (78.99%), Postives = 104/119 (87.39%), Query Frame = 0
Query:   55 MEMMRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 174
            +EMMRH KR  KLG PADQRKALLRALTTE IRHGRIKTT +RAKAVRK+VD M+ L KRGDLHARRQALGW+YDKDLV ALFE A +RYGER GGY RVLRT+PR+GDNA MA++ELV
Sbjct:  116 LEMMRHRKRVPKLGKPADQRKALLRALTTEIIRHGRIKTTAVRAKAVRKHVDHMVELGKRGDLHARRQALGWIYDKDLVHALFEAAPERYGERNGGYTRVLRTMPRQGDNAKMAVIELV 234          
BLAST of NO15G03280 vs. NCBI_GenBank
Match: XP_002293494.1 (RK17, ribosomal protein 17 50S large ribosomal subunit, chloroplast [Thalassiosira pseudonana CCMP1335] >EED89230.1 RK17, ribosomal protein 17 50S large ribosomal subunit, chloroplast [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 186.8 bits (473), Expect = 5.700e-44
Identity = 92/116 (79.31%), Postives = 102/116 (87.93%), Query Frame = 0
Query:   58 MRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 174
            MRH K+  KLG PADQRKALLRALTTE IRHGRIKTTL+RAKAVRK+VD MI L KRGDLHARRQALGW+YDKDLV +LFE A +RYGER GGY RVLRT+PR+GDNA MA++ELV
Sbjct:    1 MRHRKKLPKLGKPADQRKALLRALTTEIIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQALGWVYDKDLVHSLFEAAPERYGERNGGYTRVLRTMPRQGDNAKMAVIELV 116          
BLAST of NO15G03280 vs. NCBI_GenBank
Match: GAX10237.1 (large subunit ribosomal protein L17 [Fistulifera solaris])

HSP 1 Score: 184.5 bits (467), Expect = 2.800e-43
Identity = 101/156 (64.74%), Postives = 117/156 (75.00%), Query Frame = 0
Query:   21 FMLPSPLPLRAGSSA---RVLSTEDMSFDFGGRAKGGMEMMRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 174
            ++  S L    G SA   + L T   +    GR++  + MMRH K FK LG PADQRKALLRALTTE IRHGRIKTTL+RAKAVRK+VD MI L KRGDLHARRQA+ W+YDK+LV +LFE A DRYGE+ GGY RVLRT+ R+GDNA MAILELV
Sbjct:   19 YLFSSSLATVTGGSAFVGQALVTSPSASVHTGRSE--LNMMRHRKGFKTLGKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQAMAWVYDKNLVHSLFEAAPDRYGEQNGGYTRVLRTVARQGDNAKMAILELV 172          
BLAST of NO15G03280 vs. NCBI_GenBank
Match: CAH25378.1 (50S ribosomal protein L17 [Guillardia theta])

HSP 1 Score: 183.0 bits (463), Expect = 8.200e-43
Identity = 104/166 (62.65%), Postives = 118/166 (71.08%), Query Frame = 0
Query:    8 FLAAAVVLCLANAFMLPSPLPLRAGSSARVLSTEDMSFDFGGRAKGGMEMMRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 174
            F A  ++L  A AF+    LP+   SS+R         +    A   +EMMRHGKR  KLGLP DQRKALLR+LTTE IRHGRI TTL RAKAVR  VDKMI L+K G L ARRQA+GWMYDK LV ALFEQA +RY ER GGYCRVL+TLPRKGDN+ M I+ELV
Sbjct:    3 FAALLLLLPAAAAFLAGPQLPV---SSSR---------NGASSALSSLEMMRHGKRVAKLGLPQDQRKALLRSLTTEVIRHGRITTTLARAKAVRSEVDKMITLAKDGSLSARRQAMGWMYDKQLVHALFEQAPERYSERNGGYCRVLQTLPRKGDNSKMGIIELV 156          
BLAST of NO15G03280 vs. NCBI_GenBank
Match: OEU18714.1 (50S ribosomal protein L17 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 183.0 bits (463), Expect = 8.200e-43
Identity = 90/124 (72.58%), Postives = 103/124 (83.06%), Query Frame = 0
Query:   50 RAKGGMEMMRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 174
            ++   + M+ H K F KLG PADQRKALLRALTTE IRHGRIKTTL+RA+AVRK+VD MI L KRGDLHARRQAL WMYDK LV +LF+ A DRYG+R GGYCRVLRT+ R+GDNA MAI+ELV
Sbjct:   35 KSTSSLNMISHRKGFNKLGKPADQRKALLRALTTETIRHGRIKTTLVRARAVRKHVDHMITLGKRGDLHARRQALAWMYDKQLVHSLFDAAPDRYGDRNGGYCRVLRTVARQGDNAKMAIIELV 158          
BLAST of NO15G03280 vs. NCBI_GenBank
Match: GAX22358.1 (large subunit ribosomal protein L17 [Fistulifera solaris])

HSP 1 Score: 182.6 bits (462), Expect = 1.100e-42
Identity = 92/117 (78.63%), Postives = 101/117 (86.32%), Query Frame = 0
Query:   57 MMRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 174
            MMRH K FK LG PADQRKALLRALTTE IRHGRIKTTL+RAKAVRK+VD MI L KRGDLHARRQA+ W+YDK+LV +LFE A DRYGE+ GGY RVLRT+ R+GDNA MAILELV
Sbjct:    1 MMRHRKGFKTLGKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQAMAWVYDKNLVHSLFEAAPDRYGEQNGGYTRVLRTVARQGDNAKMAILELV 117          
BLAST of NO15G03280 vs. NCBI_GenBank
Match: XP_002177177.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51640.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 180.6 bits (457), Expect = 4.100e-42
Identity = 91/116 (78.45%), Postives = 100/116 (86.21%), Query Frame = 0
Query:   58 MRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 174
            MRH   FKKL  PADQRKALLRALTTE IRHGRIKTTL+RAKAVRK+VD MI L KRGDLHARRQALGW+YDK+LV +LFE A DRYGE+ GGY RVLRT+ R+GDNA MAI+ELV
Sbjct:    1 MRHRHGFKKLSKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQALGWVYDKNLVHSLFEAAPDRYGEQNGGYTRVLRTVARQGDNAKMAIIELV 116          
BLAST of NO15G03280 vs. NCBI_GenBank
Match: CBJ27244.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 177.9 bits (450), Expect = 2.600e-41
Identity = 87/122 (71.31%), Postives = 100/122 (81.97%), Query Frame = 0
Query:   52 KGGMEMMRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 174
            +  + MMRH K FKKL LPADQRKALLR LTT+ IRHGRI TT++RAKAVRK+VD MI LSK G LHARRQA+G++YDK LV ALFE   +RYGER GGY R++RT PRKGDNA MAI+ELV
Sbjct:   60 RSALRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKHVDHMITLSKNGSLHARRQAMGYIYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 181          
BLAST of NO15G03280 vs. NCBI_GenBank
Match: OSX78545.1 (hypothetical protein BU14_0106s0011 [Porphyra umbilicalis])

HSP 1 Score: 175.6 bits (444), Expect = 1.300e-40
Identity = 85/116 (73.28%), Postives = 101/116 (87.07%), Query Frame = 0
Query:   58 MRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 174
            MRH K+  KLG PADQRKAL+R+LTTE IRHGRI TTL+RA+AVRK+VD MIGL+K G LH+RRQALG+++DK LV +LFE A +RYGER GGYCRVLRT+PR+GDNA MAI+ELV
Sbjct:   61 MRHRKKVDKLGKPADQRKALMRSLTTEVIRHGRITTTLVRARAVRKHVDAMIGLAKDGSLHSRRQALGYIFDKPLVHSLFEAAPERYGERNGGYCRVLRTMPRRGDNAKMAIIELV 176          
The following BLAST results are available for this feature:
BLAST of NO15G03280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22269.12.100e-7890.1750s ribosomal protein l17 [Nannochloropsis gaditan... [more]
EJK74655.13.000e-4578.99hypothetical protein THAOC_03655 [Thalassiosira oc... [more]
XP_002293494.15.700e-4479.31RK17, ribosomal protein 17 50S large ribosomal sub... [more]
GAX10237.12.800e-4364.74large subunit ribosomal protein L17 [Fistulifera s... [more]
CAH25378.18.200e-4362.6550S ribosomal protein L17 [Guillardia theta][more]
OEU18714.18.200e-4372.5850S ribosomal protein L17 [Fragilariopsis cylindru... [more]
GAX22358.11.100e-4278.63large subunit ribosomal protein L17 [Fistulifera s... [more]
XP_002177177.14.100e-4278.45predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CBJ27244.12.600e-4171.31conserved unknown protein [Ectocarpus siliculosus][more]
OSX78545.11.300e-4073.28hypothetical protein BU14_0106s0011 [Porphyra umbi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G03280.1NO15G03280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588275gene_4892Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100504g2gene8175Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G03280.1NO15G03280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G03280 ID=NO15G03280|Name=NO15G03280|organism=Nannochloropsis oceanica|type=gene|length=1039bp
ATGGCCTCCCGGTCTCTCTTTTTCCTGGCGGCGGCCGTGGTGCTCTGCCT
GGCCAATGCCTTCATGCTCCCCTCCCCCCTCCCTCTGCGCGCCGGGTCGT
CTGCCCGCGTGCTTTCGACCGAGGACATGTCGTTCGACTTTGGCGGGCGA
GCAAAGGGTGGCATGGAGATGATGCGACACGGCAAGCGTTTCAAGAAGTT
GGGCTTGCCCGCTGACCAGCGTAAGGCGTTGCTCCGAGCGTTAACCACTG
AGGgtaagtcgagaggaagcagagagatggagggagagagagagggaggg
aatgaaaaataagttgaatgatgccctcggggtattgcttcgggggatat
ggagcgtattgaaatgaaaagagggggaagagaatgcaacattgacaagc
ggagctttggacgagatgactgagcgtggacgagtgaggttagggttgtg
gagaaaacatgaaagtaagccgcaaggtgaatatgacgtaccacagacca
gctcacccgcccaccctgctcctcctcactcacctccctccccttctcct
cccagCCATCCGCCACGGACGCATCAAGACGACGCTTATCCGGGCCAAGG
CCGTGCGTAAATACGTTGATAAGATGATCGGCTTAAGCAAGCGAGGAGAC
CTTCACGCCCGCCGACAGGCCCTGGGGTGGATGTACGACAAAGACCTAGT
CGCTGCTTTATTTGAGCAGgtaggcgtgggtgtgggtgtgtgaaacgggt
gtcggggagctgctgtgggcagtctttcgcgtgggatcctctctttcctc
cccgcccttgcaggcgtcttctctctccttgtttcctgatggctttgagt
cctcacgggtacctctcccgcttctccctctcacatctccatcgctcctt
cctccctcgctatctgtttctcttcctctcccagGCGCAAGATCGTTACG
GGGAGCGTGCCGGTGGCTACTGTCGTGTCCTCCGCACCCTGCCCCGCAAG
GGAGACAACGCCCCCATGGCCATCTTGGAGCTTGTCTAA
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protein sequence of NO15G03280.1

>NO15G03280.1-protein ID=NO15G03280.1-protein|Name=NO15G03280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MASRSLFFLAAAVVLCLANAFMLPSPLPLRAGSSARVLSTEDMSFDFGGR
AKGGMEMMRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKA
VRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGG
YCRVLRTLPRKGDNAPMAILELV*
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Synonyms
Publications