NO15G03280, NO15G03280 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO15G03280 vs. NCBI_GenBank
Match: EWM22269.1 (50s ribosomal protein l17 [Nannochloropsis gaditana]) HSP 1 Score: 301.2 bits (770), Expect = 2.100e-78 Identity = 156/173 (90.17%), Postives = 163/173 (94.22%), Query Frame = 0 Query: 1 MASRSLFFLAAAVVLCLANAFMLPSPLPLRAGSSARVLSTEDMSFDFGGRAKGGMEMMRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 174 MASR FFLAAA+V C NAFMLPSPLPLRAG+S+RVLS E++S DFGGR+KG M+MMRHGKRFKKLG ADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV Sbjct: 41 MASRLFFFLAAALVFCGVNAFMLPSPLPLRAGASSRVLSVEEVS-DFGGRSKGSMDMMRHGKRFKKLGKAADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 212
BLAST of NO15G03280 vs. NCBI_GenBank
Match: EJK74655.1 (hypothetical protein THAOC_03655 [Thalassiosira oceanica]) HSP 1 Score: 191.0 bits (484), Expect = 3.000e-45 Identity = 94/119 (78.99%), Postives = 104/119 (87.39%), Query Frame = 0 Query: 55 MEMMRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 174 +EMMRH KR KLG PADQRKALLRALTTE IRHGRIKTT +RAKAVRK+VD M+ L KRGDLHARRQALGW+YDKDLV ALFE A +RYGER GGY RVLRT+PR+GDNA MA++ELV Sbjct: 116 LEMMRHRKRVPKLGKPADQRKALLRALTTEIIRHGRIKTTAVRAKAVRKHVDHMVELGKRGDLHARRQALGWIYDKDLVHALFEAAPERYGERNGGYTRVLRTMPRQGDNAKMAVIELV 234
BLAST of NO15G03280 vs. NCBI_GenBank
Match: XP_002293494.1 (RK17, ribosomal protein 17 50S large ribosomal subunit, chloroplast [Thalassiosira pseudonana CCMP1335] >EED89230.1 RK17, ribosomal protein 17 50S large ribosomal subunit, chloroplast [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 186.8 bits (473), Expect = 5.700e-44 Identity = 92/116 (79.31%), Postives = 102/116 (87.93%), Query Frame = 0 Query: 58 MRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 174 MRH K+ KLG PADQRKALLRALTTE IRHGRIKTTL+RAKAVRK+VD MI L KRGDLHARRQALGW+YDKDLV +LFE A +RYGER GGY RVLRT+PR+GDNA MA++ELV Sbjct: 1 MRHRKKLPKLGKPADQRKALLRALTTEIIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQALGWVYDKDLVHSLFEAAPERYGERNGGYTRVLRTMPRQGDNAKMAVIELV 116
BLAST of NO15G03280 vs. NCBI_GenBank
Match: GAX10237.1 (large subunit ribosomal protein L17 [Fistulifera solaris]) HSP 1 Score: 184.5 bits (467), Expect = 2.800e-43 Identity = 101/156 (64.74%), Postives = 117/156 (75.00%), Query Frame = 0 Query: 21 FMLPSPLPLRAGSSA---RVLSTEDMSFDFGGRAKGGMEMMRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 174 ++ S L G SA + L T + GR++ + MMRH K FK LG PADQRKALLRALTTE IRHGRIKTTL+RAKAVRK+VD MI L KRGDLHARRQA+ W+YDK+LV +LFE A DRYGE+ GGY RVLRT+ R+GDNA MAILELV Sbjct: 19 YLFSSSLATVTGGSAFVGQALVTSPSASVHTGRSE--LNMMRHRKGFKTLGKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQAMAWVYDKNLVHSLFEAAPDRYGEQNGGYTRVLRTVARQGDNAKMAILELV 172
BLAST of NO15G03280 vs. NCBI_GenBank
Match: CAH25378.1 (50S ribosomal protein L17 [Guillardia theta]) HSP 1 Score: 183.0 bits (463), Expect = 8.200e-43 Identity = 104/166 (62.65%), Postives = 118/166 (71.08%), Query Frame = 0 Query: 8 FLAAAVVLCLANAFMLPSPLPLRAGSSARVLSTEDMSFDFGGRAKGGMEMMRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 174 F A ++L A AF+ LP+ SS+R + A +EMMRHGKR KLGLP DQRKALLR+LTTE IRHGRI TTL RAKAVR VDKMI L+K G L ARRQA+GWMYDK LV ALFEQA +RY ER GGYCRVL+TLPRKGDN+ M I+ELV Sbjct: 3 FAALLLLLPAAAAFLAGPQLPV---SSSR---------NGASSALSSLEMMRHGKRVAKLGLPQDQRKALLRSLTTEVIRHGRITTTLARAKAVRSEVDKMITLAKDGSLSARRQAMGWMYDKQLVHALFEQAPERYSERNGGYCRVLQTLPRKGDNSKMGIIELV 156
BLAST of NO15G03280 vs. NCBI_GenBank
Match: OEU18714.1 (50S ribosomal protein L17 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 183.0 bits (463), Expect = 8.200e-43 Identity = 90/124 (72.58%), Postives = 103/124 (83.06%), Query Frame = 0 Query: 50 RAKGGMEMMRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 174 ++ + M+ H K F KLG PADQRKALLRALTTE IRHGRIKTTL+RA+AVRK+VD MI L KRGDLHARRQAL WMYDK LV +LF+ A DRYG+R GGYCRVLRT+ R+GDNA MAI+ELV Sbjct: 35 KSTSSLNMISHRKGFNKLGKPADQRKALLRALTTETIRHGRIKTTLVRARAVRKHVDHMITLGKRGDLHARRQALAWMYDKQLVHSLFDAAPDRYGDRNGGYCRVLRTVARQGDNAKMAIIELV 158
BLAST of NO15G03280 vs. NCBI_GenBank
Match: GAX22358.1 (large subunit ribosomal protein L17 [Fistulifera solaris]) HSP 1 Score: 182.6 bits (462), Expect = 1.100e-42 Identity = 92/117 (78.63%), Postives = 101/117 (86.32%), Query Frame = 0 Query: 57 MMRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 174 MMRH K FK LG PADQRKALLRALTTE IRHGRIKTTL+RAKAVRK+VD MI L KRGDLHARRQA+ W+YDK+LV +LFE A DRYGE+ GGY RVLRT+ R+GDNA MAILELV Sbjct: 1 MMRHRKGFKTLGKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQAMAWVYDKNLVHSLFEAAPDRYGEQNGGYTRVLRTVARQGDNAKMAILELV 117
BLAST of NO15G03280 vs. NCBI_GenBank
Match: XP_002177177.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51640.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 180.6 bits (457), Expect = 4.100e-42 Identity = 91/116 (78.45%), Postives = 100/116 (86.21%), Query Frame = 0 Query: 58 MRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 174 MRH FKKL PADQRKALLRALTTE IRHGRIKTTL+RAKAVRK+VD MI L KRGDLHARRQALGW+YDK+LV +LFE A DRYGE+ GGY RVLRT+ R+GDNA MAI+ELV Sbjct: 1 MRHRHGFKKLSKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQALGWVYDKNLVHSLFEAAPDRYGEQNGGYTRVLRTVARQGDNAKMAIIELV 116
BLAST of NO15G03280 vs. NCBI_GenBank
Match: CBJ27244.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 177.9 bits (450), Expect = 2.600e-41 Identity = 87/122 (71.31%), Postives = 100/122 (81.97%), Query Frame = 0 Query: 52 KGGMEMMRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 174 + + MMRH K FKKL LPADQRKALLR LTT+ IRHGRI TT++RAKAVRK+VD MI LSK G LHARRQA+G++YDK LV ALFE +RYGER GGY R++RT PRKGDNA MAI+ELV Sbjct: 60 RSALRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKHVDHMITLSKNGSLHARRQAMGYIYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 181
BLAST of NO15G03280 vs. NCBI_GenBank
Match: OSX78545.1 (hypothetical protein BU14_0106s0011 [Porphyra umbilicalis]) HSP 1 Score: 175.6 bits (444), Expect = 1.300e-40 Identity = 85/116 (73.28%), Postives = 101/116 (87.07%), Query Frame = 0 Query: 58 MRHGKRFKKLGLPADQRKALLRALTTEAIRHGRIKTTLIRAKAVRKYVDKMIGLSKRGDLHARRQALGWMYDKDLVAALFEQAQDRYGERAGGYCRVLRTLPRKGDNAPMAILELV 174 MRH K+ KLG PADQRKAL+R+LTTE IRHGRI TTL+RA+AVRK+VD MIGL+K G LH+RRQALG+++DK LV +LFE A +RYGER GGYCRVLRT+PR+GDNA MAI+ELV Sbjct: 61 MRHRKKVDKLGKPADQRKALMRSLTTEVIRHGRITTTLVRARAVRKHVDAMIGLAKDGSLHSRRQALGYIFDKPLVHSLFEAAPERYGERNGGYCRVLRTMPRRGDNAKMAIIELV 176 The following BLAST results are available for this feature:
BLAST of NO15G03280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO15G03280 ID=NO15G03280|Name=NO15G03280|organism=Nannochloropsis oceanica|type=gene|length=1039bpback to top protein sequence of NO15G03280.1 >NO15G03280.1-protein ID=NO15G03280.1-protein|Name=NO15G03280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=174bpback to top Synonyms
Publications
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