NO15G03270, NO15G03270 (gene) Nannochloropsis oceanica

Overview
NameNO15G03270
Unique NameNO15G03270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1335
Alignment locationchr15:955861..957195 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:955861..957195 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G03270 vs. NCBI_GenBank
Match: EWM22267.1 (hypothetical protein Naga_100504g4 [Nannochloropsis gaditana])

HSP 1 Score: 139.4 bits (350), Expect = 1.900e-29
Identity = 76/116 (65.52%), Postives = 89/116 (76.72%), Query Frame = 0 
Query:   16 LVACCTLITTTAFVV---PSISYSRACPSATRLHAAASVAPAGSVAASLEALHDATMAKLTDTLKVEATDYPASMEVESYSGKSGVTGSVAGYKGNVRLVWTGEGKMMREEGTQGG 129
            L+  C + TTTAF+V   P +    +    T L AAA +APAGS AASLEALHDAT+  LT+ LKVE TDYPASME++SY+GKSGV GS+AGYKGNVRLVWTGEGKMMRE G +GG
Sbjct:   13 LLKACMVTTTTAFLVSPGPRVHERSSSRCTTHLRAAAPIAPAGSFAASLEALHDATITTLTEALKVEPTDYPASMELDSYAGKSGVQGSIAGYKGNVRLVWTGEGKMMRENGVEGG 128
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BLAST of NO15G03270 vs. NCBI_GenBank
Match: XP_005777307.1 (hypothetical protein EMIHUDRAFT_238159 [Emiliania huxleyi CCMP1516] >XP_005791053.1 hypothetical protein EMIHUDRAFT_109298 [Emiliania huxleyi CCMP1516] >EOD24878.1 hypothetical protein EMIHUDRAFT_238159 [Emiliania huxleyi CCMP1516] >EOD38624.1 hypothetical protein EMIHUDRAFT_109298 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 87.0 bits (214), Expect = 1.100e-13
Identity = 97/341 (28.45%), Postives = 137/341 (40.18%), Query Frame = 0 
Query:   16 LVACCTLITTTAFVVPSISYSRACPSATRLHAAA---SVAPAGSVAASLEALHDATMAKLTDTLKVEATDYPASMEVESYSGKSGVTGSVAGYK--GNVRLVWTGEGKMMREEGTQGGGMFRSDIAIWVGPLTLVPHLVMSLELGEGEGGKEGEVKVLLDYVSREDLQYTTGNNHLTDYFAGPAREA----------TEAAATDPLTRCRVVLPSFYSRVLVSPSA-------------VSLSLPASPAGITKAGEWMEAHVSRWLGWCESAKEVDR-----MKRGLLLSRDNGVRRTWVEGTAGGLEVFVGGREGGKALAKQAAIAMSGPQQEAYVGGFS 324
            L+A  +L        P  +++R   S + + A A   +    G  A+ +     A ++K+ D   +   DY      + ++G SG  G +  Y+  G   + W     +       GG + R  +A + GPLT VPHLV+S       G  +G V + +DY  R +  Y      L DY +   REA           EA  T+     R  L S    V   P +             V L LP +    + A E   A V RWLGW  SA+E+ R     M++    +RD  VR        G      G  E GKALA     A +GP  EAYVGG S
Sbjct:    3 LIAALSLGLVVPRTPPQPTFARCSTSISMVDAEATRDAATDVGGAASIVTGWQQAALSKIADQCGLTPKDY-----ADDFTGVSGSPGKIVSYEGPGAPNVAWCSGLTL------SGGEVSRGAVAAFCGPLTDVPHLVVSC------GVSDGGVDLYIDYRPRAESGYDPALPTLADYPSPETREAFAEGGNRKDFAEAYFTEEAEAARAALLSIEGAVAAPPLSKEATSALSAGPLLVDLRLPLTDHAASAAAEACSAAVDRWLGWMASAEEMGRGLSAGMRQTATYTRDTKVRANHFGFLLGRYSALFGAEE-GKALAS----ADAGPLDEAYVGGGS 321
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BLAST of NO15G03270 vs. NCBI_GenBank
Match: WP_106403568.1 (oxidoreductase [Actinocorallia sp. A251])

HSP 1 Score: 67.0 bits (162), Expect = 1.200e-7
Identity = 67/241 (27.80%), Postives = 96/241 (39.83%), Query Frame = 0 
Query:   77 KVEATDYPASMEVESY-SGKSGVTGSVAGYKGNVRLVWTGEGKMMREEGTQGGGMFRSDIAIWVGPLTLVPHLVMSLELGEGEGGKEGEVKVLLDYVSREDLQYTTGNNHLTDYFAGPAREATEAAATDPLTRCRVVLPSFYSRVLVSPSAVSLSLPASPAGITKAGEWMEAHVSRWLGWCESAKEVDRMKRGLLLSRDNGVRRTWVEGTAGGLEVFVGGREGGKALAKQAAIAMSGPQQE 317
            + E T  P+++E+ESY +   G  G VA Y G   + W     +    G          + +W+GP   VPHL ++L L         E     D V R  L      ++  DY+A P  E       D         PS + R  +SP+A   S   S        +WM AHV RWLGW + A+ V   +R      D  +RR   E         +G R  G+ L  +   A+ G  +E
Sbjct:   41 RFETTRDPSTLELESYGTYPDGPGGKVAAYSG-PEVDWMVHSWL----GNPAASFVNLHLTVWLGPQVRVPHLGIALLLWP-------EGWFYCDSVPRTSL--VIDADYYDDYYA-PVNEDWLKFQADHPDFEWFTSPSAFIRTSLSPTAQCYSFKWSEENFQAVNDWMHAHVDRWLGWVDEAEAVPEAEREAQRDTDLTIRRNIAERDPAN---SMGVRFFGEELTGKLVRALWGGDRE 263
The following BLAST results are available for this feature:
BLAST of NO15G03270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM22267.11.900e-2965.52hypothetical protein Naga_100504g4 [Nannochloropsi... [more]
XP_005777307.11.100e-1328.45hypothetical protein EMIHUDRAFT_238159 [Emiliania ... [more]
WP_106403568.11.200e-727.80oxidoreductase [Actinocorallia sp. A251][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G03270.1NO15G03270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO15G03270.2NO15G03270.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670607gene_4891Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100504g4gene8174Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G03270.1NO15G03270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO15G03270.2NO15G03270.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G03270 ID=NO15G03270|Name=NO15G03270|organism=Nannochloropsis oceanica|type=gene|length=1335bp
AACACGGACAGGACCATGCAGAGGCCCGTGACGATCGCAAGCAGGTCGAG
AGCGTTTTCCCTGGTGGCCTGCTGCACGTTGATAACAACCACAGCTTTTG
TCGTGCCCTCCATTTCGTATAGTCGTGCTTGCCCCAGCGCCACTCGTCTC
CATGCCGCCGCGTCTGTCGCTCCCGCTGGCTCTGTGGCGGCCTCCTTGGA
AGCCTTGCACGACGCTACCATGGCCAAACTCACCGACACACTCAAGGTTT
GTAATTGATGGCGCAGTTATTTACCGTTTGTCTCATGACCCTGTTAATCT
ATATTCTATCTCACTCTCTTGCAAATGCCCTGCTTTTTTTCTATTTTGCT
TTGTGATTTCCCTGCTTTTCCTCTCCTCTCCCACTCACCTGCTTGAAACA
GGTGGAAGCTACGGATTATCCTGCTTCAATGGAAGTGGAATCCTACTCCG
GCAAGAGCGGCGTCACAGGCAGCGTTGCCGGCTACAAGGGCAACGTCCGT
TTAGTCTGGACGGGAGAGGGGAAGATGATGCGCGAGGAGGGGACACAGGG
CGGGGGGATGTTTCGAAGTGACATTGCAATTTGGGTGGGGCCTTTGACAT
TGGTTCCTCATTTGGTAATGTCGCTGGAGCTGGGGGAGGGGGAGGGAGGG
AAGGAGGGCGAGGTGAAGGTGTTGTTGGACTATGTGTCGAGGGAGGATCT
ACAGTACACAACGGGGAACAACCACTTGACCGACTACTTCGCGGGACCGG
CTCGAGAAgtaagtgggcaagggagaaagggcgggagagataggagggaa
gagaggaagggaaggagacatggacgtaaaaatgttgagtacgtatttct
atcttgttggacaaaacaaacctctttctcccctctccaacatttcttct
ttccctttccccttcatcctcctgtcttcatttccccctcgctcttcaca
gGCAACAGAAGCAGCCGCCACCGACCCCTTGACCCGCTGTCGGGTCGTGC
TTCCGTCCTTCTACTCCCGCGTCCTCGTCTCTCCCTCCGCTGTGTCTCTC
TCCCTCCCTGCCTCCCCCGCTGGGATAACCAAGGCCGGCGAGTGGATGGA
GGCCCACGTCTCCCGCTGGTTGGGCTGGTGCGAGAGCGCGAAGGAGGTAG
ACCGGATGAAGAGGGGATTGCTGCTTTCGAGGGACAACGGAGTGCGGCGG
ACGTGGGTCGAGGGCACGGCCGGGGGGCTGGAAGTGTTTGTGGGAGGGAG
GGAGGGAGGGAAGGCCTTGGCGAAGCAGGCGGCGATTGCGATGAGTGGCC
CGCAGCAGGAGGCGTACGTGGGGGGGTTCAGTTGA
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protein sequence of NO15G03270.1

>NO15G03270.1-protein ID=NO15G03270.1-protein|Name=NO15G03270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MQRPVTIASRSRAFSLVACCTLITTTAFVVPSISYSRACPSATRLHAAAS
VAPAGSVAASLEALHDATMAKLTDTLKVEATDYPASMEVESYSGKSGVTG
SVAGYKGNVRLVWTGEGKMMREEGTQGGGMFRSDIAIWVGPLTLVPHLVM
SLELGEGEGGKEGEVKVLLDYVSREDLQYTTGNNHLTDYFAGPAREATEA
AATDPLTRCRVVLPSFYSRVLVSPSAVSLSLPASPAGITKAGEWMEAHVS
RWLGWCESAKEVDRMKRGLLLSRDNGVRRTWVEGTAGGLEVFVGGREGGK
ALAKQAAIAMSGPQQEAYVGGFS*
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protein sequence of NO15G03270.2

>NO15G03270.2-protein ID=NO15G03270.2-protein|Name=NO15G03270.2|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MEVESYSGKSGVTGSVAGYKGNVRLVWTGEGKMMREEGTQGGGMFRSDIA
IWVGPLTLVPHLVMSLELGEGEGGKEGEVKVLLDYVSREDLQYTTGNNHL
TDYFAGPAREATEAAATDPLTRCRVVLPSFYSRVLVSPSAVSLSLPASPA
GITKAGEWMEAHVSRWLGWCESAKEVDRMKRGLLLSRDNGVRRTWVEGTA
GGLEVFVGGREGGKALAKQAAIAMSGPQQEAYVGGFS*
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Synonyms
Publications