NO15G03110, NO15G03110 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO15G03110 vs. NCBI_GenBank
Match: EWM22289.1 (Pectin lyase fold/virulence factor [Nannochloropsis gaditana]) HSP 1 Score: 715.7 bits (1846), Expect = 2.300e-202 Identity = 680/1144 (59.44%), Postives = 811/1144 (70.89%), Query Frame = 0
Query: 52 MSFVAVEGCTPKDADDLRFMVDHTSCSVVTLMPNTNYSIVEHLVIRRRITIIGRPLGMPYIDAQNSTRAFLVEAGGFLDVRFVHVVKGKIIEIVRLLLYQVRGSVCWTRRGGVAMFTGCVFTISFRNAMQIVGLTPPITNIQVIGGGFLAESGTIRMTDCQFASARIGIAFREXXXXXXXXXXXXXXXXXXXXXXXNMAIFSNAFGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPETPIRFRNPGLVAIYVAGNNVILANAIGNARNIYGLVTVNKHGQTDWQKNIFVAKKISWRFSNAGPRGDDFIARRNLGGADENPRRGFSFLEAEANAAGAEGTAEGTPVDYSE---TPDYFHARNLNVVTITDMKPAMKALFDKYMPVDETSPKEEERVLSSGSLGAALLEGLGEIADA-KKTLADTTAALEAAPETSP--------DDWRPEFVKP----------SNVSHADDPLYVFAEMPGLKVNESKTDRIYVAKPLDACGLCDITPGMTMDNVDGPGATS-CAMENACEKLDSSAVDMAATLEGKGTGEGTT--QKPVSGMWMTGREESAANTTVQQLELRAIFTP------SSAGGSP-----EKKQVKHALITAIGELGLSDRWHLHVEASMEATKNVDPLLRYEVSTEDYEDEV--DFGHVDPGEVEGQQECGRNELFKAYIVSDWKNVTDEIS--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAPKGTIPPTAPSICELVTYRTTSILIPASSMVGV-------VDAAPVSRRTTASSTEFHRVLSADGTRWEREEAEVEEDDDQIKALLLKEANAALTIYVSADVNPQDLLRQLPTRVEEVDIGGIYSLIVSNFPPAVRAVTLTVHAVPESGEDVFVGSFASKPHLITRQQVWEWIPSE---VEGLERGREYYLEVTSSDGSSFDATNKFEVR 1146
M +VAVEGCTPK+A++LR+M+DHT+C +TL+P TNYSI E LVIRRR+T++GRPLG+P IDA N+TRAFLVEAGGFLDVRFV +VKGK +E+V L+LY++RG C+ RRGGVA+FTGC F+ ++RNA +G+TPP TN+QV GGG +AESGT+R+TDC RIGIAFRE NMAIF+++ G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P TP+ FR+ GLVAIYVAGNNV L+ +GNA ++ ++TVNKHGQTDW +NIFVA+KISWRF++ GP DDF+ RR L EN + G + A A G V+ + T F +L T D+KP + + +KY+PV++ E+ ++G G +EG G D + TLA + PETSP D+ P N++H + Y FAE+PGLKV +KTD+IYVA P+D CG+CD+TPG T DNVDGPGA S C M+N C D+S + + EG G G G ++P SGMW+T REE +AN+TVQ LE+R+ FTP SS+G SP K +V AL AI LGLS+RWHL VE S E++KNVDP LR E E E + D+G +DP EV Q+ CGR E FKAY+VSDWKNVTDEIS D P PS+CELV YRTTS+ +P+++ G + +APV+RRTTAS++ FHRVLSADG R+E EEAEVEEDD+Q+KALL +EA+AALT+ + +P LLR+LP RV+ V+I YSL++SNFP + TLTV AVPE GEDV + + S+PH++TRQQVW W P + E L +GREYYLEVTSSDG +FD+TNKF +R
Sbjct: 1 MGYVAVEGCTPKNAEELRYMIDHTTCPRLTLVPATNYSITEQLVIRRRVTLVGRPLGLPIIDAHNTTRAFLVEAGGFLDVRFVEIVKGKFVEVVPLVLYRLRGPTCYIRRGGVALFTGCRFSANWRNAALFLGITPPQTNVQVFGGGIVAESGTLRVTDCHVFRPRIGIAFREIQFVGGEFLVLGGNMYLTGCIFVNMAIFASSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPATPVAFRSRGLVAIYVAGNNVFLSTQLGNATVLFNVLTVNKHGQTDWSRNIFVARKISWRFTDVGPNPDDFVGRR-LEAPGEN-KAGLDPAKRSGLGKPATLAARGEDVEVRQTHPTVPRFLTGSLGSETSFDVKPTVTDILNKYLPVEDVESIAED---TTGEEGHDRVEGHGNQNDGPEATLA------KGGPETSPNTSQGRVEDNAVASVTGPKTNYSGDGDLGNITH--NAFYAFAEIPGLKVERTKTDKIYVAAPMDVCGVCDVTPGNTFDNVDGPGALSACGMQNTCATSDASTLALPPGGEGDGNGAGQAGGEQPGSGMWVTSREEKSANSTVQLLEIRSTFTPFAAPPLSSSGASPAVAGVNKIEVAAALGEAIVSLGLSERWHLRVEPSWESSKNVDPYLRLEGDAEMEESDATFDYGSIDPAEVANQEACGRKESFKAYLVSDWKNVTDEISRKLKTSTGTKALTLALQKEVEHTAAVAANATDGENDGGMPAPPSVCELVVYRTTSLYVPSTTFAGSGATAVTRLASAPVTRRTTASTSAFHRVLSADGLRFELEEAEVEEDDEQVKALLSREASAALTLLIPDSTDPYALLRELPPRVDAVEIDENYSLVLSNFPGTFQMATLTVRAVPEKGEDVLLATLPSQPHMLTRQQVWSWRPRDSLGAEQLVKGREYYLEVTSSDGMAFDSTNKFVIR 1131
BLAST of NO15G03110 vs. NCBI_GenBank
Match: EWM26817.1 (Pectin lyase fold/virulence factor [Nannochloropsis gaditana]) HSP 1 Score: 132.5 bits (332), Expect = 8.300e-27 Identity = 68/171 (39.77%), Postives = 97/171 (56.73%), Query Frame = 0
Query: 54 FVAVEGCTPKDADDLRFMVDHTSCSVVTLMPNTNYSIVEHLVIRRRITIIGRPLGMPYIDAQNSTRAFLVEAGGFLDVRFVHVVKGKIIEIVRLLLYQVRGSVCWTRRGGVAMFTGCVFTISFRNAMQIVGLTPPITNIQVIGGGFLAESGTIRMTDCQFASARIGIAFRE 225
++AV GCTP LR +V+ SC V+TL P Y + E + +RR + IIGRPL +P IDA RAF VEA G LD+RFV V +G + +V + ++RG V W R GG +FTGC+ + ++ + ++ GG L E+GT+R+ DC R G+ RE
Sbjct: 182 YIAVHGCTPDTGVQLRSLVETGSCPVITLTPGVRYVLDEEIHVRRAVVIIGRPLTLPVIDAHLIARAFSVEAKGRLDLRFVKVWRGVPMAVVDEVYLELRGGVAWIREGGEGVFTGCLMLVHDDEVGDVLLASDLRVTARLYGGFLLLEAGTLRVRDCHMLLQRPGVLLRE 352
BLAST of NO15G03110 vs. NCBI_GenBank
Match: EWM25479.1 (hypothetical protein Naga_100207g1 [Nannochloropsis gaditana]) HSP 1 Score: 80.5 bits (197), Expect = 3.800e-11 Identity = 56/212 (26.42%), Postives = 97/212 (45.75%), Query Frame = 0
Query: 22 AQTLSDTVNDALQSKVAGIMGQIQATKQATMSFVAVEGCTPKDADDLRFMV-DHTSCSVVTLMPNTNYSIV-----EHLVIRRRITIIGRPLGMPYIDAQNSTRAFLVEAGGFLDVRFVHVVK--GKIIEIVRLLLYQVRGSVCWTRRGGVAMFTGCVFTISFRNAMQIVGLTPPITN-IQVIGGGFLAESGTIRMTDCQFASARIGIAFRE 225
A+ SD + + +T S ++ C P+ +LR M D + C++++L+P Y++ + + I R IIG P+ +P ID +S R F + AGG LD++FV + G++I + +L RG GG G +FT + M + + P ++ ++V GG G + +T F + G+ FRE
Sbjct: 114 AEKSSDLIGGVFGEEAGAASEDFFSTMLKDTSLISGSACVPQSGMELRQMAEDPSRCAIISLLPGKIYNVALPDSDDDITISTRKVIIGNPISLPTIDGADSKRIFHIVAGGNLDLQFVRTYRGGGELIATIPVL----RGGTALVELGGRFSAFGVIFTNAPPVGMPAILIAPDVSRAVRVFGGQVFVTGGIVTITLSHFWVLQPGVLFRE 321
BLAST of NO15G03110 vs. NCBI_GenBank
Match: EWM26475.1 (hypothetical protein Naga_100045g21 [Nannochloropsis gaditana]) HSP 1 Score: 67.4 bits (163), Expect = 3.300e-7 Identity = 49/202 (24.26%), Postives = 91/202 (45.05%), Query Frame = 0
Query: 41 MGQIQATKQATMSFVAVEGCTPKDADDLRFMVDHTSCSVVTLM-PN-TNYSIVE--HLVIRRRITIIGRPLGMPYIDAQNSTRAFLVEAGGFLDVRFVHVVKGKII----------EIVRLLLYQVRGSVCWTRRGGV-AMFTGCVFTISFRN---AMQIVGLTPPITNIQVIGGGFLAESGTIRMTDCQFASARIGIAFRE 225
MG FV + C P++ +L+ V+ C +V L PN Y +++ +++ R + ++G P +P IDA RAF + GGFL++++V V +G + + + +++++G G A F G +F N Q + +T ++ GG +GT+R +C F + I + F +
Sbjct: 185 MGNSPRNATDLSKFVGKDTCWPRNIVELQIAVEEADCPLVVLTNPNPMAYMLMDMNEIMVMRHVRVLGHPALLPTIDAMMGMRAFTIMEGGFLELQYVRVRQGMGMYRDRYGLEGRDDISSKVFEIKGGSVMLEEGAEGANFVGVIFLAVMTNQEMTEQAIQDQIDMTGWRIYGGHVYVTAGTVRFFNCHFWDSMILMPFTD 386 The following BLAST results are available for this feature:
BLAST of NO15G03110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 4
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO15G03110 ID=NO15G03110|Name=NO15G03110|organism=Nannochloropsis oceanica|type=gene|length=5342bpback to top protein sequence of NO15G03110.1 >NO15G03110.1-protein ID=NO15G03110.1-protein|Name=NO15G03110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1146bpback to top Synonyms
Publications
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