NO15G03090, NO15G03090 (gene) Nannochloropsis oceanica

Overview
NameNO15G03090
Unique NameNO15G03090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3667
Alignment locationchr15:849606..853272 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:849606..853272 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO15G03090 vs. NCBI_GenBank
Match: XP_005854968.1 (hypothetical protein NGA_0387100 [Nannochloropsis gaditana CCMP526] >EKU21395.1 hypothetical protein NGA_0387100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1169.8 bits (3025), Expect = 0.000e+0
Identity = 666/1110 (60.00%), Postives = 786/1110 (70.81%), Query Frame = 0 
Query:   33 VPSSSSSSRPNHPLSIQSPGG--STFEVHVAPGPITTREEVDQTGVGPFAFHTPALKAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSRSNSGRLDGSALVSAASGSTSGK-----GRKKEKTLCESNCSNSSGNMDASGQRRAQEGIGMLGRSTRTVKRLWRPFGLVHNIVGDHEEMRRHPSLMHREPTARVTRFFLWRKWTIIVIILQLYVQVGVDIRNFSIFMSDPYESVCPCRNEVAAQKALEEDATRANKARLATRSALGVASILAAVQGSPATAAGYAAQAQLY--DKDVGISVPSELSGAFVGKEELLKGLELSGINGGEG-----DVWSSVLFQADGSVLSPQQAFAQAVADGTLSPESTIKRLQGL---------------------QAAYMNXXXXXXXXXXXXXXXXXXXXXXXXXXITNTSDANGTV--EEDVNTACDICDSVASMARTGMLPSCYKYHALPGFNNVIETAGNDGRVGLVAFRTVNSTTPISLVYRCNDTEVGTKNTTCFYDDKLLLKRGCLLGFYASEYVTIEMSTVLARLTYAPSLTMRWADCDPITHTQVRDKVCLLDGKMVSLGYCEAAGLVSPVVERQCCLGSEDIFDTVYNQDYNNLMIFFDVVSLIVSFSRLISMHLALYFIDSYKMSAIFVMWTWAVPFLGAFLKYSYPLNDFVSQLGREGAINFMQSLTGAEYVSNTVLTKAMAEALSRSGGYDPIVLYLMDLIDALRSYAVYGQAFVMVTIEFYYRFLYALMVLGELGPLAICVLPGFRSAAVVLKTLLPESATLGWMVSVGPMVYMPFLACVLIMFIQVFSDHWFTLAALFYSLSNLAMIVFYWRNSSIYMDPISFRKQLHRQDMIRNILLALSFAFSMVFMVESSQKETQGAASTMRTIGPAGFLSFIVRCISTFQLASVFSADVVLYMLRRLQRQARQDRLSNMEYERALKEFWILDDPKDQELEVHGDSIDISASASAAVAGMGRKTMKEMESSGGISMRSWNSVDGILSPGEGMIDGP----GGIAKVVEVGEGGDGRGG---------LRNSSRRPPSVTFTSSSPTLLQTDSSCGSAVSSDKERTGTTPLRGRR 1093
            VP S+S+ +   PLSIQSPGG  STFEVHV  GP TTR   D++G+  F  +T  +K G                                  +   N G ++ +  V+A  G  +       G    +T      ++   ++ +SGQRR QE +G+LG+S+R V RLWRPFG VH+IVGD EEM RHPSLMHR PTARVTRFFLWRKWTIIVIILQ+YVQVGVDIRNFSIFM DPYES+CPCR+ V A+                   ALGVA+++AAV+GSP +AA YAAQAQ Y  D D  + VPS         +++   L+  G+   E      +VW  VL Q DGS+LSP++A+ QA+A G L  E T +RLQ L                     QA                               T  +D  G +  ++D+N  CDICDSVA++ARTGMLP+CYKYHA PGFN V++   ND ++GL+AFRTVNST PISL+Y+CN T+VG K+TTCF D KLLLKR C +GF ASEYVT+EMS VLARLTYAPSLTMRWADCDP TH Q R+KVCL +GKMV+LGYCEAAGL  PV+ER+CCLGSEDIFDTVYNQDYNNL+IFFDVV+L+VSFSRLI+ HLALYFIDS+KMSAIFV+W WAVPFLGAF+KYSYPLN FVS+ GR+GAI FM SLTG+EYV+N  LT+AMAEA+SRSGGYDPI+LYLM+L+DALRSYAVYGQAFV+VTIEFYYRFLYALMVLGELGPLAI VLPGFRSAAVVLKTLLPESATLGW+VSVGPMVYMPFLAC LIMFIQVFSD+WFTL++L YSLSNL MIVF+WRNS IY+DP+SFRKQL RQDMIRN+LLA SFAF+MVFMVESS++E+QGA STMRTIGPAGFLSF+VRC+  FQLASVFSADVVLY+LRRLQRQARQDR SNMEYERALKEFW+LD+ KD ELE+ GDSIDISASASAAVA + R+  K+ +       R     + + S GE   +      G +A VVE+ +GG GRG           RN+S RP SV F+SSSP  L   S C S  S +K  TGTTPLRG+R
Sbjct:   28 VPPSASAMQ---PLSIQSPGGTSSTFEVHVTSGPFTTRAGEDESGLFAFHDYTSGVKGG----------------KSNDNSAKSHTDGKPSKSHGNQNHG-VNRTVAVAATQGRETSPFSHRGGSDSARTTHTPENNSDDESLTSSGQRR-QEQLGLLGKSSRAVTRLWRPFGRVHHIVGDEEEMSRHPSLMHRAPTARVTRFFLWRKWTIIVIILQMYVQVGVDIRNFSIFMQDPYESLCPCRDAVKARXXXXXXXXXXXXXXXXXXXALGVATLMAAVRGSPLSAARYAAQAQQYHTDADRRVEVPS--------WDDMQSTLQQQGVGVNENVGPSLEVWRDVLLQPDGSLLSPEEAYNQAIAHGMLPSEDTAQRLQKLYVSLQKSEKEEEKQGGRRLQAQAPRPGTPPGREDASHQVQETPSLPSSNDSGDTTAGTDEFGPIGSDQDLNPNCDICDSVATVARTGMLPACYKYHASPGFNQVVDAGENDAKIGLLAFRTVNSTRPISLIYQCNGTDVGKKSTTCFQDSKLLLKRDCTIGFDASEYVTVEMSAVLARLTYAPSLTMRWADCDPDTHVQTREKVCLSNGKMVALGYCEAAGLEPPVIERECCLGSEDIFDTVYNQDYNNLLIFFDVVALVVSFSRLIATHLALYFIDSHKMSAIFVVWAWAVPFLGAFIKYSYPLNGFVSESGRDGAIEFMASLTGSEYVNNKGLTQAMAEAMSRSGGYDPILLYLMNLVDALRSYAVYGQAFVVVTIEFYYRFLYALMVLGELGPLAISVLPGFRSAAVVLKTLLPESATLGWLVSVGPMVYMPFLACALIMFIQVFSDYWFTLSSLSYSLSNLVMIVFFWRNSGIYIDPVSFRKQLIRQDMIRNVLLAASFAFAMVFMVESSRRESQGAGSTMRTIGPAGFLSFVVRCVLNFQLASVFSADVVLYLLRRLQRQARQDRSSNMEYERALKEFWVLDELKDLELEMRGDSIDISASASAAVAELDREG-KQDKPGQEKKRRPGREGEKVSSGGEEEREPTTPLNGWVAAVVEM-DGGGGRGAKGREKGKVEKRNASTRPSSVHFSSSSPNGLGAYSDCSSPESPEKLETGTTPLRGKR 1106
The following BLAST results are available for this feature:
BLAST of NO15G03090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854968.10.000e+060.00hypothetical protein NGA_0387100 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL146nonsL146Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001268NSK001268Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G03090.1NO15G03090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588188gene_4873Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G03090.1NO15G03090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G03090 ID=NO15G03090|Name=NO15G03090|organism=Nannochloropsis oceanica|type=gene|length=3667bp
ATTTGCTCTCGCGTACTCTCACCTTCGTCTCCTCTGGGCCTTTCCTTGGG
CCTAAGCCATGTGGGAGCTCCTTTTTTGGTACATGAATGCACCGCTGTAT
GCCAATGATGGCTTAATCTGTCGCACTTCTTGCGTATCCATTCTGCCTTT
TCCACCGCTCCTTGTCCGGCAATTGCGTCATGTTCCGTGGCTCTACCCTT
GCACATAAACACCACCTAAACACTCCCACCTAACACGCAAATGTAGGATC
CTTTTCAACTGTTAGCGGGCTTGTGGGGGCTGCAATGGTAGGCCGAAAGC
AAGAGGGGCCATCTCTCCTGAACGACAGCGAAGCGTCCTCTCGTGCCTAT
TTAGCCTCGGCTTCTGTCACTTCTTCAACAGTGCCCTCATCCTCCTCATC
AAGCAGACCTAATCATCCCTTATCAATTCAGAGCCCTGGAGGAAGTACAT
TTGAAGTGCACGTGGCCCCTGGGCCAATCACAACCCGCGAGGAGGTGGAT
CAGACTGGGGTCGGCCCCTTCGCCTTTCACACCCCTGCGCTTAAAGCCGG
CAGCAGTGGCGGTGGTGGTGGGAAGAGCTATAGTAACACCACAAGCAACA
ATAACAGCAAAAGCAGTAGCAGCAGCTCCAACCGCAAGGCTTTGAGGAAG
AAGTACAGTCGAAGCAACAGTGGGAGGCTGGATGGCTCCGCCTTGGTCTC
AGCCGCCAGCGGCAGTACGAGCGGGAAGGGGAGGAAGAAAGAGAAAACCT
TATGCGAAAGCAATTGTAGCAACAGCAGCGGCAACATGGATGCCAGCGGT
CAGCGTCGAGCACAGGAGGGAATAGGTATGCTGGGCCGAAGCACTAGGAC
TGTAAAGCGGTTGTGGCGACCGTTCGGGTTGGTTCATAATATTGTTGGGG
ACCACGAAGAGATGAGACGCCACCCTTCCCTGATGCACCGCGAACCCACC
GCTCGAGTCACCCGTTTTTTCCTCTGGAGGAAATGGACGATCATAGTCAT
TATTTTGCAGTTGTACGTTCAGGTAGGGGTGGACATTAGAAATTTTAGCA
TCTTCATGTCTGACCCGTACGAGTCAGTCTGCCCTTGCCGGAACGAGGTG
GCGGCACAAAAGGCATTGGAAGAAGATGCTACGCGAGCTAATAAGGCCCG
TCTAGCCACGCGTTCGGCGTTGGGAGTAGCCTCCATCTTGGCGGCCGTGC
AGGGATCGCCTGCAACCGCCGCAGGGTATGCGGCGCAGGCCCAGCTTTAC
GACAAAGACGTGGGGATAAGTGTCCCATCTGAACTTAGCGGGGCCTTCGT
AGGGAAAGAGGAGCTCTTGAAAGGACTTGAGTTGAGTGGAATAAATGGAG
GGGAAGGGGATGTGTGGAGCAGTGTGCTGTTTCAGGCGGATGGGAGTGTA
CTCTCGCCGCAGCAGGCCTTCGCCCAAGCCGTGGCTGATGGAACGTTATC
GCCGGAGAGCACAATTAAGCGGCTACAGGGCTTGCAAGCTGCTTATATGA
ACGATGACGGAGGAGATGAAGGTAGACGTCGTCTTCAAGAGCAGCAGCTG
CTGCCCTCCTCCTCAACCACGACTCCCACAATCACCAATACCTCAGACGC
TAATGGCACGGTTGAGGAAGACGTTAACACGGCCTGTGACATCTGCGACA
GCGTGGCAAGCATGGCCCGGACCGGAATGCTTCCTTCTTGTTACAAGTAT
CATGCCTTGCCAGGGTTCAATAACGTGATCGAAACGGCGGGGAACGACGG
GAGGGTTGGCCTGGTGGCCTTTCGGACTGTCAACTCGACCACGCCTATCT
CTCTGGTCTACCGGTGCAACGACACGGAGGTGGGCACCAAAAACACCACC
TGCTTTTACGACGATAAGCTCTTGCTCAAACGGGGTTGTTTATTAGGGTT
TTATGCTTCGGAGTACGTGACAATCGAGATGAGTACTGTGTTGGCTCGTC
TGACGTACGCGCCTAGCTTGACCATGCGGTGGGCAGACTGCGACCCTATC
ACACACACACAAGTCCGAGACAAGGTCTGCTTATTAGATGGAAAGATGGT
GTCGCTGGGGTATTGTGAGGCAGCGGGCTTGGTATCCCCTGTGGTAGAAC
GGCAATGCTGCTTGGGCTCGGAGGATATTTTTGACACGGTCTACAACCAG
GACTACAACAACTTGATGATCTTCTTCGACGTGGTATCCTTGATTGTCTC
CTTTTCGCGGCTTATTTCCATGCACCTGGCACTGTATTTCATCGACTCCT
ACAAGATGTCGGCCATCTTCGTTATGTGGACCTGGGCAGTTCCCTTCCTG
GGGGCTTTCCTTAAGTACTCCTACCCATTGAATGACTTCGTCTCTCAATT
AGGCCGGGAGGGAGCGATCAACTTTATGCAATCCTTGACGGGAGCCGAGT
ACGTGAGTAACACCGTACTGACCAAAGCGATGGCTGAGGCTTTGTCACGC
TCTGGAGGATACGATCCTATCGTGCTTTACCTCATGGATCTGATCGATGC
ACTGCGAAGTTACGCCGTGTACGGTCAGGCGTTTGTAATGGTGACGATCG
AATTTTACTATCGCTTTTTATACGCGCTGATGGTCCTGGGTGAACTCGGC
CCTCTAGCCATATGTGTCTTGCCGGGGTTCCGGTCTGCAGCTGTGGTACT
TAAGACACTGCTACCCGAGTCAGCCACGCTGGGATGGATGGTGAGCGTGG
GCCCTATGGTGTACATGCCTTTTTTGGCTTGTGTCCTCATCATGTTCATC
CAGGTGTTTTCGGACCACTGGTTCACCTTGGCGGCGCTCTTCTACTCATT
GAGCAATCTGGCCATGATTGTCTTCTATTGGCGCAACTCAAGCATTTATA
TGGACCCTATCTCCTTCCGAAAGCAGTTGCACAGGCAAGACATGATCCGC
AATATTCTGTTGGCCTTGTCTTTTGCATTTTCCATGGTCTTTATGGTCGA
AAGCTCTCAAAAAGAGACCCAGGGTGCTGCGAGTACGATGCGGACGATCG
GCCCGGCGGGATTCCTAAGTTTCATAGTCCGCTGCATTTCCACCTTTCAG
TTGGCAAGTGTGTTTAGCGCTGATGTGGTTCTCTACATGCTTCGGCGACT
CCAGCGTCAAGCACGACAAGATCGACTTAGCAACATGGAGTACGAACGCG
CGCTGAAAGAGTTCTGGATCCTGGATGATCCGAAGGACCAGGAATTGGAG
GTGCACGGGGATAGTATTGACATAAGTGCAAGTGCCAGCGCGGCCGTGGC
TGGCATGGGCCGCAAGACCATGAAGGAAATGGAGAGTTCCGGGGGAATCA
GTATGCGGAGCTGGAATAGTGTGGATGGTATTCTGTCGCCAGGAGAGGGG
ATGATTGACGGACCAGGGGGAATCGCGAAAGTGGTGGAGGTGGGTGAAGG
AGGGGATGGCCGGGGGGGGTTGCGAAACAGCAGCAGGCGCCCGCCATCGG
TCACATTTACATCGTCTTCGCCTACCTTGTTGCAGACGGACAGTAGCTGT
GGTAGTGCAGTAAGTAGTGACAAGGAGAGGACTGGTACAACCCCTTTGAG
GGGAAGGCGAGGCCCGTAATTTTCTAAAGTTTTTAAATAACATAGGAGAC
GCCGAACGCAGCATGTAAATTTTATAAATTGACTGAAATGAGAAAGAAAC
TACGACAGGAAAAGCCT
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protein sequence of NO15G03090.1

>NO15G03090.1-protein ID=NO15G03090.1-protein|Name=NO15G03090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1095bp
MVGRKQEGPSLLNDSEASSRAYLASASVTSSTVPSSSSSSRPNHPLSIQS
PGGSTFEVHVAPGPITTREEVDQTGVGPFAFHTPALKAGSSGGGGGKSYS
NTTSNNNSKSSSSSSNRKALRKKYSRSNSGRLDGSALVSAASGSTSGKGR
KKEKTLCESNCSNSSGNMDASGQRRAQEGIGMLGRSTRTVKRLWRPFGLV
HNIVGDHEEMRRHPSLMHREPTARVTRFFLWRKWTIIVIILQLYVQVGVD
IRNFSIFMSDPYESVCPCRNEVAAQKALEEDATRANKARLATRSALGVAS
ILAAVQGSPATAAGYAAQAQLYDKDVGISVPSELSGAFVGKEELLKGLEL
SGINGGEGDVWSSVLFQADGSVLSPQQAFAQAVADGTLSPESTIKRLQGL
QAAYMNDDGGDEGRRRLQEQQLLPSSSTTTPTITNTSDANGTVEEDVNTA
CDICDSVASMARTGMLPSCYKYHALPGFNNVIETAGNDGRVGLVAFRTVN
STTPISLVYRCNDTEVGTKNTTCFYDDKLLLKRGCLLGFYASEYVTIEMS
TVLARLTYAPSLTMRWADCDPITHTQVRDKVCLLDGKMVSLGYCEAAGLV
SPVVERQCCLGSEDIFDTVYNQDYNNLMIFFDVVSLIVSFSRLISMHLAL
YFIDSYKMSAIFVMWTWAVPFLGAFLKYSYPLNDFVSQLGREGAINFMQS
LTGAEYVSNTVLTKAMAEALSRSGGYDPIVLYLMDLIDALRSYAVYGQAF
VMVTIEFYYRFLYALMVLGELGPLAICVLPGFRSAAVVLKTLLPESATLG
WMVSVGPMVYMPFLACVLIMFIQVFSDHWFTLAALFYSLSNLAMIVFYWR
NSSIYMDPISFRKQLHRQDMIRNILLALSFAFSMVFMVESSQKETQGAAS
TMRTIGPAGFLSFIVRCISTFQLASVFSADVVLYMLRRLQRQARQDRLSN
MEYERALKEFWILDDPKDQELEVHGDSIDISASASAAVAGMGRKTMKEME
SSGGISMRSWNSVDGILSPGEGMIDGPGGIAKVVEVGEGGDGRGGLRNSS
RRPPSVTFTSSSPTLLQTDSSCGSAVSSDKERTGTTPLRGRRGP*
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Synonyms
Publications