NO15G02970, NO15G02970 (gene) Nannochloropsis oceanica

Overview
NameNO15G02970
Unique NameNO15G02970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3199
Alignment locationchr15:805049..808247 +

Link to JBrowse

Properties
Property NameValue
DescriptionCalponin domain containing protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:805049..808247 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036872CH_dom_sf
IPR001715CH-domain
Homology
[Close]
BLAST of NO15G02970 vs. NCBI_GenBank
Match: EWM22307.1 (Calponin domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 236.1 bits (601), Expect = 4.800e-58
Identity = 262/725 (36.14%), Postives = 309/725 (42.62%), Query Frame = 0 
Query:  366 GGREGVTHSDLSQQRPCSSPCSLPFDRDPFRNGRLLCALFIHLEPDLASHTKGLHELLHEDLTS----------SPSSPLHRARERVACALWLFRCRTCPPIPSSYFNDVDGVLRGDPHIIYGLLWELQQVY---APSPYFSPSLYHARQSKGQTDGYQTASLNSGRLASSPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETRASDGTTAVIDCGYRRPFPRRLEASQ--ETEEVR------------GGRRTPAGIG-----------------------------AVRRTLSAQKETETE---IEEEKLGEDILPIIEGNGRASMXXXXXXXXXXXXXXXXXXXXXXXXXXVPQLESSSLSVAPSFHLSSTFPFPISSHEARHNRRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCYRYHVGKTELATLEREIINEVSFSRLSPPPSPSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRHLQ---FEPTXXXXXXXXXXXXXXXXXXXXXXXXXDFRPRFH---------------------LGGAEAEELLQWLEDEGVTLQQPERLLLSASHHQDCPEFSDGLLLARLVGRLEGWGEKGLEGIDWTPGAAMVTRLKNIKRVLEVWKRKRRGIPVHLLHREFDILEGRTDVLLPLLWHIRRVY 1008
            GG EG       + +  SSP  LP  RD FRNGR LCALF+ LEP++A+ TKGL ELL E+ TS          SP S L RARER+ CA WLFRCRT P IP  YF  V+ VL GD  +++ LLWEL+ +Y   +P               G++   +    ++G    +                                 +R  DG T     G +RP PR     Q  E E VR            G    PAG G                                      K  E E    EEE+               S  XXXXXXXXXXXXXXXXXXXX      P     S S +P   LSS  P   S    R                                                                       G++  A  +R  + +    R+SP  S     XXXXXXXXXXXXXXXXXXXXXXXXXX                          L      PT                            P  H                     LG AEAE++L WL   G+ LQQPERLLLS+S   DCPEFSDGLLLARL+GRLEGWGE+G+EGIDW+PG A+VTRL+N+KRVL+VW+RKR+GIP+HLLHREFDILEGRTDVLLPLLWH+RRVY
Sbjct:    4 GGCEGGGGRGRGEDQGPSSPSHLPLHRDSFRNGRFLCALFLRLEPEIAACTKGLQELLCEEDTSHSFLPPSLPPSPPSSLVRARERLGCAFWLFRCRTFPLIPLCYFERVEDVLLGDTTVLWSLLWELRNIYNLSSPXXXXXXXXXXXXXXXGRSHSMKLPFEHAGNGTRAHGREPCEI-------------------------SREKDGATP-YPPGGQRPAPRAWAPGQGTEAEGVRSEKTANARKFWSGRCGVPAGGGQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPSKGAEGERPRWEEER--------ARRQRTESGQXXXXXXXXXXXXXXXXXXXXFPEDLYPHPYGPSPSCSPVPTLSSLRPHAFSPDRVREAISFHGASAGEASSGERDGRLPRSIQTPRHDQGQPLWARPRHWHQEHLHEEGAKTRHTILREGRARSDDHGRS--AGRDRTPMGKTISMRVSPSLSQEDASXXXXXXXXXXXXXXXXXXXXXXXXXXGHALRPDRLPCPFLSESERRAAPSPALSPSFASPTLGYPPSSQDFDHSFPPEAFTRPLTDFSAPLLHAQPILSPRLSEDEASLPCPARLGSAEAEDILGWLGAHGIVLQQPERLLLSSSQQSDCPEFSDGLLLARLLGRLEGWGEEGVEGIDWSPGTAVVTRLQNLKRVLDVWRRKRKGIPLHLLHREFDILEGRTDVLLPLLWHVRRVY 692
The following BLAST results are available for this feature:
BLAST of NO15G02970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22307.14.800e-5836.14Calponin domain containing protein [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL146nonsL146Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001281NSK001281Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02970.1NO15G02970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588132gene_4859Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100465g3gene8133Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02970.1NO15G02970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02970 ID=NO15G02970|Name=NO15G02970|organism=Nannochloropsis oceanica|type=gene|length=3199bp
ATAGGCCGATGATGATGGCGATTGATTGCCTCTTCCGCTAGGCTTGCAAG
CTGCAGGCAGGACTCACCCACGACTCTCAGCCATGGCCCGTCGAGGCATC
CACTCGCCAGCCTCCTCACCCTCTCTCCCACTGCTCCTGCACTGGGTCAA
TACTTTGCCGCCTACCTCCTGCTTACTCGTCAGCGACCCCAAAGATCTTC
AGGATGGTCAGGTTCTGTGTAATTTGGTGGTCGAATGCTTGCTACCACGC
CACCACGCCGTCTCCTCCCTCGACAAAGCCTTGCGTCTCCTTGAGCATTA
TCACGCCCCTCGATTCCCCGCCCTCTTCGCTGCACTCTACGATGAATACG
ACATCATGGAGCTTGTCTGGCTGGTGAAGCAGGGCAACGAGCGGGTTATC
ACCAAGTTGCTGACGGCGCTGCGGATGCTATGGGAAGAGGAAGGCTTGGA
CTGTCGAGTGCGTCGAGTGAAGGAAGAGGAAACGGAGGCGGCACCGTCAG
CATCTAGGAGCAAGAACGGCACCAGTAGCAACAGGAATGGGAATAAGAGC
AAAAGAAAGGGGAAGTCGATTACTAAAATGGATGAAGAGGCAGTGGACGT
AAGGGAAGATAGGCATGGAGGAAGACAAAGCAGAACTTTCGCAAGCAACG
AGAGCGCGGCGCGGAAAGCCTACCATCCACATCCCCACGCCCCCTACCAC
CACCACATCAATTATCCTTCTATCCGCAATGGGAGAGAGGAGAAATCTAT
TTCCGAAAAAGTACCTAAAGCGCAATCTCGACGCAGATCTCCTTTGCAAT
TGTCCTCGTCGCTTGTGTCCTCCTCCTCCTCCCCTTCTTCCCCCTCCACC
ACCGACGCACATGGGAAGGTAGGGAGGCATGTAGCAAGTAACGATGCAAC
CTTATCCTCACCTCCGGGGGCAGCCACAAATCCCCATTATGGGCGAAAAT
GCACCTCTTCGGAGCGACCACGAAGGACAGGCCAAGCTATCGCACTCTCC
GGCAGGAGCAGCAGCAGCAGCAGCAATCGAAGAACCCATGCTTCTACAAC
ACCTGTATCAGAACAACAGCAGCTCAGTGTTTGCACTTGGCTGAGTCATC
TCTCTCTTTCCTTGCCTTCACGTTCGTCGCTATCTCCTTCCGTACTCGAT
ACGGGGCGTTATGATATGGGCAGAGAAGGAGGGAGGGAGGGTGTGACTCA
CTCTGATTTATCCCAGCAACGTCCTTGCTCCTCGCCCTGTTCTCTTCCAT
TCGACCGAGATCCTTTCCGCAACGGTCGTCTACTCTGCGCCCTCTTCATC
CACCTCGAGCCGGACCTTGCCTCCCACACCAAAGGCTTACACGAACTCCT
CCACGAAGACCTGACCTCCTCCCCCTCTTCCCCTCTCCACCGTGCCCGCG
AACGTGTCGCATGCGCTCTCTGGCTGTTTCGGTGTCGTACCTGCCCTCCA
ATCCCCTCCTCGTACTTCAACGACGTTGATGGCGTTCTCCGCGGTGACCC
GCATATCATCTATGGACTTCTCTGGGAGCTGCAACAAGTTTACGCCCCAT
CTCCTTATTTCTCTCCTTCCCTCTATCACGCTCGGCAAAGCAAGGGTCAA
ACAGATGGATATCAAACGGCATCGTTGAATTCAGGGCGGCTCGCATCATC
GCCGGCAGCAGTAGCAAAAGCAGCAGCTTGGCATCGGCAGCAGCAGCAGC
AGCAGGAGGGAAAACAAAAGGAGGAAGAAGTGGAGGGGGAAGGAGATGAA
ACAAGAGCATCCGATGGCACCACAGCCGTCATTGACTGTGGATATCGTCG
TCCTTTTCCAAGACGCCTGGAGGCAAGCCAGGAGACGGAAGAAGTAAGGG
GAGGGCGAAGAACGCCCGCAGGAATAGGAGCAGTAAGAAGGACGCTGTCA
GCTCAAAAGGAGACGGAGACTGAGATAGAGGAGGAGAAACTGGGGGAAGA
CATTCTGCCGATTATAGAAGGCAACGGCAGAGCAAGTATGTTGGAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGGAGCAAGAAGAAGAGGAAGACCTC
TTTCCCAGTTCCTCAGCAGTCCCTCAGCTAGAATCTTCATCTCTCTCCGT
TGCCCCCTCCTTCCATCTTTCGTCGACCTTTCCATTTCCCATCTCTTCCC
ACGAGGCCAGGCACAACCGCAGGTGCAGCAGCAGCAGTCGTCGACACCTT
CACGATGACCAGAACTCCTACCACCACCGTCACCACCACCACCACCAGCA
GCACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCACCAGAAGC
ACCAGCACCAGCACCAGCACCAGCACCAGCACCACCAGCAGCAAGAAACG
GAAAGCTGCTACCGTTACCACGTCGGGAAGACAGAGCTGGCAACGTTGGA
GCGAGAAATTATCAATGAAGTCTCCTTCAGCCGTCTTTCTCCTCCTCCTT
CTCCCTCCTTCCCCACCTCGCGGCCTTCTCCCACGACGAGCAGAAGTGCA
ACAAGACGCAGCCGTCTTCCTATTCACAGCCACTCTTTTCCTTCTACTTC
TACTCCCTTGCCGTCCGACCACAATAGCACTTCCCACTACCATGGTAACG
TCCACCCTTACCACCAACGGCACCTCCAGTTTGAACCCACCACTGCTGGT
ACTGCTGCTGCTGCTGCTGCTGATGACGACGACGACGACGACGACGACGA
ATGTGTAGACGAAGACGACTTCCGTCCCCGCTTTCACCTCGGTGGTGCCG
AGGCCGAGGAGCTGCTCCAGTGGTTGGAAGACGAGGGCGTCACCCTACAG
CAACCCGAGCGGCTCCTTCTTTCGGCGTCCCACCACCAGGACTGCCCCGA
GTTTTCCGACGGCTTGCTCTTGGCGCGGTTGGTGGGGAGGTTGGAGGGAT
GGGGGGAGAAAGGGTTGGAAGGGATTGACTGGACCCCCGGCGCCGCCATG
GTGACGAGGTTAAAGAATATTAAGAGGGTGTTGGAGGTATGGAAGAGGAA
GCGGAGGGGGATTCCTGTGCATTTGTTGCATCGGGAATTCGATATTTTGG
AGGGAAGGACGGATGTCTTGCTGCCCTTGTTGTGGCACATCCGTCGGGTG
TACGGGAGGGAGAGGATCAACGCTGATGACTAGAAAGAGGAAGCTCTAAG
AAAACAGTCTACATATTTTCTGATAACGAAGGAGCGCATAAAACCATCA
back to top

protein sequence of NO15G02970.1

>NO15G02970.1-protein ID=NO15G02970.1-protein|Name=NO15G02970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1017bp
MARRGIHSPASSPSLPLLLHWVNTLPPTSCLLVSDPKDLQDGQVLCNLVV
ECLLPRHHAVSSLDKALRLLEHYHAPRFPALFAALYDEYDIMELVWLVKQ
GNERVITKLLTALRMLWEEEGLDCRVRRVKEEETEAAPSASRSKNGTSSN
RNGNKSKRKGKSITKMDEEAVDVREDRHGGRQSRTFASNESAARKAYHPH
PHAPYHHHINYPSIRNGREEKSISEKVPKAQSRRRSPLQLSSSLVSSSSS
PSSPSTTDAHGKVGRHVASNDATLSSPPGAATNPHYGRKCTSSERPRRTG
QAIALSGRSSSSSSNRRTHASTTPVSEQQQLSVCTWLSHLSLSLPSRSSL
SPSVLDTGRYDMGREGGREGVTHSDLSQQRPCSSPCSLPFDRDPFRNGRL
LCALFIHLEPDLASHTKGLHELLHEDLTSSPSSPLHRARERVACALWLFR
CRTCPPIPSSYFNDVDGVLRGDPHIIYGLLWELQQVYAPSPYFSPSLYHA
RQSKGQTDGYQTASLNSGRLASSPAAVAKAAAWHRQQQQQQEGKQKEEEV
EGEGDETRASDGTTAVIDCGYRRPFPRRLEASQETEEVRGGRRTPAGIGA
VRRTLSAQKETETEIEEEKLGEDILPIIEGNGRASMLEQQQQQQQQQQEQ
EEEEDLFPSSSAVPQLESSSLSVAPSFHLSSTFPFPISSHEARHNRRCSS
SSRRHLHDDQNSYHHRHHHHHQQHQHQHQHQHQHQHHQKHQHQHQHQHQH
HQQQETESCYRYHVGKTELATLEREIINEVSFSRLSPPPSPSFPTSRPSP
TTSRSATRRSRLPIHSHSFPSTSTPLPSDHNSTSHYHGNVHPYHQRHLQF
EPTTAGTAAAAAADDDDDDDDDECVDEDDFRPRFHLGGAEAEELLQWLED
EGVTLQQPERLLLSASHHQDCPEFSDGLLLARLVGRLEGWGEKGLEGIDW
TPGAAMVTRLKNIKRVLEVWKRKRRGIPVHLLHREFDILEGRTDVLLPLL
WHIRRVYGRERINADD*
back to top
Synonyms
Publications