NO15G02740, NO15G02740 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO15G02740
Unique Name	NO15G02740
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2489
Alignment location	chr15:748189..750677 +

Link to JBrowse

Properties


Property Name	Value
Description	Unknown protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr15	genome	chr15:748189..750677 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

Homology

[Close]

BLAST of NO15G02740 vs. NCBI_GenBank
Match: EWM20011.1 (hypothetical protein Naga_102323g1 [Nannochloropsis gaditana])

HSP 1 Score: 124.4 bits (311), Expect = 1.500e-24
Identity = 80/124 (64.52%), Postives = 94/124 (75.81%), Query Frame = 0

Query:  337 QPHLSGCDSNATIGSLGSSNGSDSGTGSEMHGRQRRRKSSKLRLRCFAGPLCTKLRDEDHLRRTTHPCPMGLACPVLHAVETPETTLXXXXXXXXXXXXXXXLDETFEHSSLFEHVGRNVLPLC 461
            +P +S  +SN  I  L +    +     E   R +R +S KLRLRCFAGPLC KL+DEDH+RRTTHPCP GLACPV+ A ETPET LXXXXXXXXXXXXXXXLDE+  HSSLFEHVGR+++PLC
Sbjct:   80 KPSMSVSESNEAIACLHAPASGE----KEDKDRLKRHRSPKLRLRCFAGPLCKKLQDEDHVRRTTHPCPDGLACPVVRAPETPETMLXXXXXXXXXXXXXXXLDESPGHSSLFEHVGRSIMPLC 199

[Close]

BLAST of NO15G02740 vs. NCBI_GenBank
Match: EWM29557.1 (hypothetical protein Naga_100006g61 [Nannochloropsis gaditana])

HSP 1 Score: 74.3 bits (181), Expect = 1.800e-9
Identity = 66/224 (29.46%), Postives = 101/224 (45.09%), Query Frame = 0

Query:    9 PTEIRPACLLIDGHHMHQAREAAGNPPFHHV-----VRALEIAYGCRFVRKEWHEGTPDGRPTPFHLAISTPEAGHVIPKVRALHTTP--GFAVTSE-GRTTSHRVAIRVPKGVDVALALAMV-----QHGHHNKRFDDYGL-------------VVVVTGDGDL---EEAFERTPMRVVVCGSRDVLAPALRPWVRSEGNRGLYLDEVMAAALSLAAGEHAGG 204
            P+    A L+IDG ++  +  AAGN     V     +  LE      F +K  ++GTP G+P  FH  I+  +  HV     A+H  P     VT + G        I + KGVD+ALAL ++     +  + +       L             +VV+TGD D+    E  ER    VVVCG R  L+  L P+VR    + ++L++++  A +L +G    G
Sbjct:  149 PSHRSRAKLVIDGAYLEASLTAAGNGLGSQVDLLALLSLLEDRLEVSFEKKVLYQGTPGGQPNNFHRLIALVDGAHV-----AVHLQPLKSRTVTLDLGGGCKEDREILLDKGVDLALALEILEPLESERANASPTLSSSSLASAATSTSFSQPVLVVLTGDEDMCPVMERAERVGYSVVVCGGRKSLSEKLHPFVRKGAGQAIWLEDLLDHASALGSGACLNG 367

The following BLAST results are available for this feature:

BLAST of NO15G02740 vs. NCBI_GenBank

BLAST of NO15G02740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2

Position :

Zoom :

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Match Name	E-value	Identity	Description
EWM20011.1	1.500e-24	64.52	hypothetical protein Naga_102323g1 [Nannochloropsi...	[more]
EWM29557.1	1.800e-9	29.46	hypothetical protein Naga_100006g61 [Nannochlorops...	[more]

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL141	nonsL141	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR006	ncniR006	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR064	ngnoR064	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR063	ngnoR063	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK001347	NSK001347	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO15G02740.1	NO15G02740.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|565596	gene_4835	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO15G02740.1	NO15G02740.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO15G02740 ID=NO15G02740|Name=NO15G02740|organism=Nannochloropsis oceanica|type=gene|length=2489bp
ATGGCGTCGTTGTCGCCATCCTCACCCACGGAGATCCGCCCAGCCTGTCT
CCTGATCGATGGACATCACATGCATCAAGCCAGGGAAGCTGCAGgtacgt
tatgttgtggctgtgtcgaatctatgtccctgcgcctgcagacaccgcaa
cggattttaggcaacaatgcatccatttcattttcgcgatacctttcctt
ccctcgctaactttccttgcacagGCAACCCTCCCTTTCACCACGTCGTC
CGCGCTCTGGAAATCGCTTATGGGTGTAGGTTCGTCCGCAAGGAATGGCA
CGAAGGCACGCCCGACGGCCGTCCCACACCCTTCCACCTTGCCATCTCTA
CACCAGAAGCGGGGCATGTCATCCCGAAAGTCCGTGCTTTACATACGACT
CCCGGGTTTGCGGTCACGTCGGAAGGACGGACCACATCCCACCGTGTCGC
GATTCGCGTCCCTAAAGGCGTGGATGTGGCATTAGCCCTGGCAATGGTGC
AACATGGCCATCACAATAAGAGATTCGACGATTATGGGCTTGTTGTCGTG
GTGACGGGCGATGGGGATTTGGAAGAGGCTTTTGAACGGACGCCCATGCG
AGTGGTGGTGTGTGGGTCCAGGGACGTGCTGGCACCAGCCTTGAGGCCTT
GGGTGCGGTCGGAGGGGAACCGAGGGCTGTATTTGGATGAGGTCATGGCG
GCTGCTCTATCACTGGCTGCTGGGGAGCACGCGGGAGGGTCCGGGAAGAT
GGTTGCTAAGCAGCACCAGCACCAGCACCAGCATCAGCATCAGCACCAGC
AGGAACTCGCTGCGTCACGAGACCCTGGGACTGGCGGTTTGCACACCGAC
GACGCCCTCTCCTCTTCTTCCTCTTCCCGCAGCACCAATCGCAACGACAC
GCGGCCAGTTAACACTGTGGTCAACTCCGGTATGGGCACCCTGTCCTCCG
CTGCCACCGCGACGAATAGCAGTAGCAGCACCAACAAGATGGTTGACTCC
TCCGTTTCCTTCGCCTCTGCCTACGGCACCATCCCTACCTCGGGTGACGT
ACAATCGGAGCACTGGAAGCAGCATGTACTACAACAGCAGCATCAGCAGC
ATGACGACGAACACGCTTTGATTGGCCCTTCTTTGCTACAGCCCCATCTC
TCCGGCTGCGACAGCAATGCCACCATCGGAAGCCTCGGGAGCAGCAACGG
CAGTGACAGTGGGACCGGCAGCGAAATGCACGGACGACAGAGACGCCGTA
AGTCCTCGAAGCTCCGATTACGTTGCTTTGCTGGTCCGCTGTGTACGAAA
CTGAGGGATGAAGATCACTTGCGGAGGACGACGCACCCATGTCCTATGGG
CTTGGCGTGCCCGGTTTTGCATGCCGTCGAGACGCCAGAAACGACCTTAC
ACATGGAGAGGTTCTTGCATCCATGCCCGAGGGGGCGTGTGTGTTTGGAC
GAAACTTTCGAGCATTCGTCGCTGTTTGAGCATGTAGGACGGAATGTGTT
GCCCCTGTGCTCGATCGTGGGCTGCAAGGGGGGGGCTAACGGGGGAGGGA
TTATTGGGGCGGCCGGGGGGGGGAGGGGGGGAAGGGGGGGGGGGAGGGAG
CCAGAAGGATCGACAGATGATCAAGATGGCAGTACAGCAGTACCATGgtg
gggtgccacacatgcacatatgtccacatgggcgacaatgttcgttttta
tcgcactcggtggcggacaagagagtgattcggcatacggcgagtttcat
ccatccttgcccctggggggcaagGTGCGTGGCGCGGAGGGCGGAGACGT
GGAACTGGCAGCACATGTTGCAATTTACCCATTTCGCGGAGGATGATGAG
CAGGTGCAACGGGAGAGAGAGGAGGAGGAGGCGAAGGGAAGGTTGGGAGG
AGGGAAAGGGAGGGAGGACATAAGCGCGGAGAGGGACGAGGGGAGGATGG
AGGAGCACGGGTTCTTTTCCCTGTCGTCGAACATTGGCAACGGTGGCAGC
AACAACCATGTCGGGCTGCATGGGCTGAACCGTTTGTCATCGCTTATGCA
CCACTTGCCTTCCTCTGGCATGACAGCTGCTCATGCCTCAATTGTGACTC
GTCTGCAGGCCCAGGCCTACGCCCATGCGCTTGCCTCCGCGCAGCACAGC
CCGCCTTCAATGCCGGAGGAGCGGAGAGACATTGATGCAGGACTGCTGCT
ATCTTCCTCTTCCTCGGAAGGAGGAGATTACTCCCTCTTGGGTGGCGCGG
GGGTGGCGGCAGGGAAGGGGGAAGGGGAGCGAGGAAGGAGGTATTTTCAA
AATGGGCAACACCACACGGCTTCTTCTTTGGGGCGAGGTGGCGTGGATGG
CAGTGGAGAGGACGAGGAGGATGAGGAGGGGAGGGAAAGAGAGGGGGTAG
GAGGAGGCGATGGTGGTGAGAAAGAGCAGTTTTTGATTCCGTCTTTTAGC
TCTTCTCTCTTGCCGCCGGCCTACCAAAATATTTGGTGA

protein sequence of NO15G02740.1

>NO15G02740.1-protein ID=NO15G02740.1-protein|Name=NO15G02740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=744bp
MASLSPSSPTEIRPACLLIDGHHMHQAREAAGNPPFHHVVRALEIAYGCR
FVRKEWHEGTPDGRPTPFHLAISTPEAGHVIPKVRALHTTPGFAVTSEGR
TTSHRVAIRVPKGVDVALALAMVQHGHHNKRFDDYGLVVVVTGDGDLEEA
FERTPMRVVVCGSRDVLAPALRPWVRSEGNRGLYLDEVMAAALSLAAGEH
AGGSGKMVAKQHQHQHQHQHQHQQELAASRDPGTGGLHTDDALSSSSSSR
STNRNDTRPVNTVVNSGMGTLSSAATATNSSSSTNKMVDSSVSFASAYGT
IPTSGDVQSEHWKQHVLQQQHQQHDDEHALIGPSLLQPHLSGCDSNATIG
SLGSSNGSDSGTGSEMHGRQRRRKSSKLRLRCFAGPLCTKLRDEDHLRRT
THPCPMGLACPVLHAVETPETTLHMERFLHPCPRGRVCLDETFEHSSLFE
HVGRNVLPLCSIVGCKGGANGGGIIGAAGGGRGGRGGGREPEGSTDDQDG
STAVPWCVARRAETWNWQHMLQFTHFAEDDEQVQREREEEEAKGRLGGGK
GREDISAERDEGRMEEHGFFSLSSNIGNGGSNNHVGLHGLNRLSSLMHHL
PSSGMTAAHASIVTRLQAQAYAHALASAQHSPPSMPEERRDIDAGLLLSS
SSSEGGDYSLLGGAGVAAGKGEGERGRRYFQNGQHHTASSLGRGGVDGSG
EDEEDEEGREREGVGGGDGGEKEQFLIPSFSSSLLPPAYQNIW*

Synonyms

Publications