NO15G02670, NO15G02670 (gene) Nannochloropsis oceanica

Overview
NameNO15G02670
Unique NameNO15G02670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1371
Alignment locationchr15:729756..731126 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:729756..731126 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0030246carbohydrate binding
Vocabulary: INTERPRO
TermDefinition
IPR019028CBM_49
Homology
The following BLAST results are available for this feature:
BLAST of NO15G02670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL141nonsL141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR064ngnoR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001339NSK001339Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02670.1NO15G02670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630038gene_4828Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02670.1NO15G02670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02670 ID=NO15G02670|Name=NO15G02670|organism=Nannochloropsis oceanica|type=gene|length=1371bp
ATGCACCACCGCCCCTCCCTTTTCAAGTATCTTTTGCTCTGGCTTGTCGG
TTTTGTCGTCAACGGCCAAGGCCAAGAACAGCAACAACCGCCCTTGACTC
AGTGGGGCGCCATGGAAGACCTGAGCACCTTTCCCACAGTTTTCAACACA
ACGTTTGCTGCACGGCAGGGCGATAGAACTGTGGATGAGATCTTGCATAT
CCGTCCTACCCTCTTTGTAAACTATGACGCCTTCGGCAATTTTACCACGC
CTTCTAGTGGCAGCACTCAAATATATAAAGTGAGCGTGTTGAACGAGGGT
CCAGGGGACGTGACACAGCTTGCGATCAAGATTGAGGACTTCAACATTTC
TTCCTCCTTCTGGGGCTTAAACACCTTGGACAGCAATGAAACCTACCAGT
ATCTGCCCAAGTACCGCGCACCCCTTCGCCAAGGCGATAAATGGATATTT
GGTTTCATTCAGAACACGAACCGGCCAAGCTTTGCCGAGGTAGAACCTCT
TTACGGGCAAACCGGCGACGGACGATTTTTTAACTTTACCTCTATTATTC
CCTCCCCTCCAAACCCTGATGGGACCGATGCGGTGCTGGTGGAGGAAGAT
GTGAAGGAGAGCTACTGGAGGGACCAGCGCTACGTGATTTGGAGTGGCCG
CGTGACGAACATGGGTTCTTATCCTTTGAGCGCCGTGGGCGTGGATGTGC
AAAACATCACTTCGACTACTGGCACGTGGCAGTTGGTGTATGATCCTGCG
ACCAACGCTACATACCTGCCCTTGCGTGGCGGTTTCTTGCATCCGAACGA
AAGCCAGCGCTTCGGGTTTATCATGCCCGTGGTCGAGGGACGACCGAATG
TGAGCCTCAGCTATGTCACCACACCAAATGCTTTGTACAACCTCACGGCG
CCAAACGTCTTTGATGAGGAGAAGCCAAGAGAATTCTTGCCGCGCATGGG
AAGCAACGCGACCCTGCAGGAGTCCTCTGGGGGCTTGCTTGTTCCTTACC
CTCCTACCCGCGTCCGCCCTGGGCAGCAGCAGCAGGAGGGTGAGCATCCA
GAGGGCCAACACCAGGACCAGTACCAGGACCAGCAGCAGCAGTATCGAGA
CCAGGGACAGCGGCAGCAAGGGGAGCAGCGGTTACCGCAAGAACAGCGAG
GCGACGTACAGCAGCAGCAGCAGCAGCCCGAACAACAGACTCGAGATGAA
GCGGATAGAGCAGGTCGAGGCGAGCAGGGAGAGGAGATAGGACAAAACAC
GACCGCGTCGGTGAATGAGACACAGGCCACTGAAAAGACTTTCGTCAAGA
GTGGGATGCCGTGTAAGAATAAAGAGATCCACCACCGCCTCCGGGAGATG
GGACAGGCTGGGCGAGAGTAA
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protein sequence of NO15G02670.1

>NO15G02670.1-protein ID=NO15G02670.1-protein|Name=NO15G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MHHRPSLFKYLLLWLVGFVVNGQGQEQQQPPLTQWGAMEDLSTFPTVFNT
TFAARQGDRTVDEILHIRPTLFVNYDAFGNFTTPSSGSTQIYKVSVLNEG
PGDVTQLAIKIEDFNISSSFWGLNTLDSNETYQYLPKYRAPLRQGDKWIF
GFIQNTNRPSFAEVEPLYGQTGDGRFFNFTSIIPSPPNPDGTDAVLVEED
VKESYWRDQRYVIWSGRVTNMGSYPLSAVGVDVQNITSTTGTWQLVYDPA
TNATYLPLRGGFLHPNESQRFGFIMPVVEGRPNVSLSYVTTPNALYNLTA
PNVFDEEKPREFLPRMGSNATLQESSGGLLVPYPPTRVRPGQQQQEGEHP
EGQHQDQYQDQQQQYRDQGQRQQGEQRLPQEQRGDVQQQQQQPEQQTRDE
ADRAGRGEQGEEIGQNTTASVNETQATEKTFVKSGMPCKNKEIHHRLREM
GQAGRE*
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Synonyms
Publications