NO15G02570, NO15G02570 (gene) Nannochloropsis oceanica

Overview
NameNO15G02570
Unique NameNO15G02570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2384
Alignment locationchr15:707806..710189 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:707806..710189 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO15G02570 vs. NCBI_GenBank
Match: EWM22336.1 (hypothetical protein Naga_100277g5 [Nannochloropsis gaditana])

HSP 1 Score: 459.9 bits (1182), Expect = 1.500e-125
Identity = 426/777 (54.83%), Postives = 478/777 (61.52%), Query Frame = 0 
Query:    1 MRRQGARTALLRA-FLMLFMAAAPTVTWGFSILPLPSSSTTHHPLPRSHTIALASQRQPAGGDAGGEFIGHSYDGESESEDPYLKSLKRGQ-------AGRTGAPPA--SRGPVTRTSEEIKAMNDAAKARMEAYARGELPPGFGTPAQAPAGLPPSTPSSPEGFNPNKFMDFYREHEAKLAAENAAKVAETAARAPPPPLRPPGAPIVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSRFKGVFDAAASAPGSNPAKERLKQFLLSKYAPDDMSEQAVNYRRLIHFADT-GGYSGPQTEDSDEGYISKLKADAREKIKNNPWQTIRKEDLAPGEKGVPLPPSIPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPKMGIESSLTQLGAYLTAHQAVGERLQGADLDRLEQLLTSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEMLASLGADEEGARAAGAQVPRLLNLLQDV-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEPKELTSEERSKMQGTMALVLKHSGAFGKMSGPLKGEELGLLKTVLGDTMALLRGETEEAYGQSVEEYLQENPGAIEELKQAQAAAEGAVSPFSVPKVPPPAEGKMKSYRELLEEAKRKKEA 762
            MRR G    +  A  L++ +  AP  TWGF +LP+ SS        R  + ALASQ+ P  G   GE+I  SY  + E+EDPYL SLKRG+        G T A P   S    TRT EEIKA+N+AAKARMEAYARGE PPGFG     P+G  PST     GFNPNKFMDFYREHEAKLAAEN                         XXXXXXXXXXXXXXXXXXXXXXXXXX              GGSRFKGVFDAAA+A  +NPAKERLKQ+LLS+YAPDDMSEQAVNYRRLI FADT GGYSG  TEDSDE Y+++LKADAREKI+NNPWQT+R+E+LAP EKGVPLPP  PTP                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXX L +MGIESS+TQLGAYLTAH+A GERLQG DLDRLE LLTSV                                                        L+ LA LGADEEGA AAG +VPRL  LL+                                                             XXXXXXXXXXXXXXXXXL+  EL+SE+R+K+QGTMALVLKHSGAFGKMSGPL+GEELGLLK+VL DTMA+LR ETE AY  SVE+YL+++P A+EEL +AQAAA    S F+V  VP PA GK KSY+ELL EA++KK++
Sbjct:   25 MRRHGTDIKMFWAPVLVISLMVAPASTWGFYLLPV-SSLLNGRLTSRPPSTALASQQPPPSGRDSGEYIPQSYGLKEEAEDPYLVSLKRGEPPRREAGVGSTSASPVGPSHASQTRTPEEIKALNEAAKARMEAYARGEKPPGFGASPPVPSGFTPSTXXXXXGFNPNKFMDFYREHEAKLAAEN----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEQAKGSPQSYESHGGSRFKGVFDAAAAAGSTNPAKERLKQYLLSRYAPDDMSEQAVNYRRLIQFADTGGGYSGSSTEDSDEAYLAQLKADAREKIRNNPWQTVRREELAPSEKGVPLPPLAPTP------EPTGTQAAARQDAGLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYASPHSYTXXXXXXXXXXXXXXXXXXXXXXALAQMGIESSMTQLGAYLTAHKATGERLQGQDLDRLESLLTSV----------GAMLEREGRRLGSRPAYSEEEGPGVPVQGFLVEREEREVLLATAASLQALAGLGADEEGALAAGREVPRLQVLLRRALAVVDGPSGGKAPEYSQKSGASPLSEAFSGPAAVQGPGAMPWPQSVRDVPFPVPASPSLXXXXXXXXXXXXXXXXXLDTVELSSEDRAKLQGTMALVLKHSGAFGKMSGPLRGEELGLLKSVLNDTMAVLRKETETAYDCSVEKYLEDHPHAMEELAEAQAAAASTGSQFTVMNVPAPAAGKPKSYKELLSEARQKKKS 780
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BLAST of NO15G02570 vs. NCBI_GenBank
Match: XP_005855025.1 (hypothetical protein NGA_0402800, partial [Nannochloropsis gaditana CCMP526] >EKU21337.1 hypothetical protein NGA_0402800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 272.3 bits (695), Expect = 4.500e-69
Identity = 200/339 (59.00%), Postives = 222/339 (65.49%), Query Frame = 0 
Query:    1 MRRQGARTALLRA-FLMLFMAAAPTVTWGFSILPLPSSSTTHHPLPRSHTIALASQRQPAGGDAGGEFIGHSYDGESESEDPYLKSLKRGQ-------AGRTGAPPA--SRGPVTRTSEEIKAMNDAAKARMEAYARGELPPGFGTPAQAPAGLPPSTPSSPEGFNPNKFMDFYREHEAKLAAENAAKVAETAARAPPPPLRPPGAPIVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSRFKGVFDAAASAPGSNPAKERLKQFLLSKYAPDDMSEQAVNYRRLIHFADT-GGYSGPQTEDSDEGYISKLKADAREKIKNNPWQT 329
            MRR G    +  A  L++ +  AP  TWGF +LP+ SS        R  + ALASQ+ P  G   GE+I  SY  E E+EDPYL SLKRG+        G T A P   S    TRT EEIKA+N+AAKARMEAYARGE PPGFG     P+G  PST     GFNPNKFMDFYREHEAKLAAEN                         XXXXXXXXXXXXXXXXXXXXXXXXXX              GGSRFKGVFDAAA+A  +NPAKERLKQ+LLS+YAPDDMSEQAVNYRRLI FADT GGYSG  TEDSDE Y+++LKADAREKI+NNPWQT
Sbjct:    1 MRRHGTDIKMFWAPVLVISLMVAPASTWGFYLLPV-SSLLNGRLTSRPPSTALASQQPPPSGRDSGEYIPQSYGLEEEAEDPYLVSLKRGEPPRREAGVGSTSASPVGPSHASQTRTPEEIKALNEAAKARMEAYARGEKPPGFGASPPVPSGFTPSTXXXXXGFNPNKFMDFYREHEAKLAAEN----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEQAKGSPQSYESHGGSRFKGVFDAAAAAGSTNPAKERLKQYLLSRYAPDDMSEQAVNYRRLIQFADTGGGYSGSSTEDSDEAYLAQLKADAREKIRNNPWQT 334
The following BLAST results are available for this feature:
BLAST of NO15G02570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22336.11.500e-12554.83hypothetical protein Naga_100277g5 [Nannochloropsi... [more]
XP_005855025.14.500e-6959.00hypothetical protein NGA_0402800, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL141nonsL141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR064ngnoR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02570.1NO15G02570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02570.1NO15G02570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02570 ID=NO15G02570|Name=NO15G02570|organism=Nannochloropsis oceanica|type=gene|length=2384bp
ATGAGACGACAAGGCGCGCGCACAGCGCTTCTTCGGGCCTTCTTGATGCT
CTTCATGGCTGCGGCGCCCACCGTAACCTGGGGTTTTAGTATCCTCCCGC
TGCCTTCCTCCTCTACGACTCACCATCCCCTCCCACGCTCTCACACGATT
GCATTGGCGTCGCAGAGGCAGCCTGCAGGCGGCGATGCTGGTGGTGAGTT
TATCGGCCACAGCTACGATGGCGAAAGTGAGTCGGAGGATCCTTATTTGA
AATCCCTCAAGCGCGGTCAAGCCGGCCGCACAGGTGCCCCTCCCGCTTCC
CGTGGCCCCGTTACGCGCACATCCGAGGAGATCAAAGCCATGAATGACGC
CGCAAAAGCCCGCATGGAAGCCTACGCACGCGGGGAATTACCACCAGGCT
TCGGCACCCCTGCCCAAGCCCCTGCAGGCCTCCCTCCCTCCACCCCTTCC
AGCCCGGAAGGCTTCAACCCGAACAAGTTCATGGACTTTTACCGGGAGCA
CGAAGCAAAACTCGCCGCCGAGAACGCCGCCAAGGTCGCCGAAACTGCTG
CCCGTGCTCCCCCCCCTCCTCTGCGTCCTCCCGGTGCGCCAATTGTGGAG
GCCACTCCAGAACCCTACGTGCCACCGGCCCGCTACCAACAGCAACCTTC
GCCCGAACAAATGCAAGACCAGCAGGCCGTGGCTCAACAAAAAGGGACGC
CGCAGAACTACGAGCAACACGGCGGCTCGCGTTTTAAGGGGGTCTTCGAC
GCAGCCGCCTCTGCTCCCGGCAGCAACCCTGCGAAGGAGAGACTGAAGCA
ATTCCTGCTCTCCAAGTACGCCCCAGACGACATGAGCGAGCAGGCCGTGA
ACTACCGCCGCTTGATCCACTTCGCGGACACGGGGGGATATTCCGGCCCA
CAAACTGAAGACTCTGACGAAGGCTACATCTCCAAGCTCAAGGCCGATGC
CCGTGAAAAGATCAAGAATAACCCCTGGCAGACTATCCGCAAAGAGGACC
TTGCCCCGGGTGAGAAGGGGGTCCCCCTGCCTCCCTCTATCCCTACGCCT
CAACAGCAACAAACACAGCAGCAACAACAGGCTGCCTTTACGGCACAGCA
GACCAAAGTGACGAGTGCATGGGACGACGATGCGGCGAACTACAACAACC
GCAGTGGGCAAGGGAAAGGGCAGTCTACCCCCCCTCCCCCTCCTGGTTGG
GGCTCCAATCCCATGACCACCGGCAGCACCGCCGgtccctacatcccccc
tccttacgccccttcccccctcctccatcttcgtatcctccccaagagta
ccttcagcaacccacccctgtcaaccaagGCGCTTTTTACTTCAGCCCTT
CTCCTCCTCCTCCTCCTCCCCTTTACGATCCTCCTCCTCCTCCTCCTCCT
CCTTCCATGCTCCCCAAAATGGGCATCGAGAGCTCTTTGACTCAGTTAGG
GGCATATCTAACAGCACATCAAGCGGTGGGGGAGCGGTTACAGGGCGCTG
ACCTCGATCGACTCGAGCAGCTTCTAACGTCCGTCATTCGGATGATGCAA
GAAGAAGGGGGAAGGGTACCTGCAGTGGTGGCAACAGCAGCAGCAGCAGC
AGCAGCAACAGGAGGAGGAGCGGCAGCGCCGAAAGCAAGGCCAGCGAATG
GATATTTGGTGGAGGAGAAGGAAAGGCAGTTGTTGCTATCAACAGCGGCG
GCGTTGGAGATGCTTGCGTCACTGGGGGCGGACGAGGAAGGGGCAAGAGC
AGCAGGAGCTCAGGTGCCACGCTTGCTCAATTTACTGCAAGACGTCATCG
AAGTGGTGGCGGGACCGGAACAGCAGCAAGAAGCGCAGCGGCCGCAACAG
CAGCAGCAACAGCAGCAGCAGCAACAACAACTCCAAGAAGCTGTACGTTC
CGCTGCGCCCCTTTCTCCCTCCTCTCCTCCAGCTCCTACGCTCATAACCC
CCTCTTCCTCCCCCTCTTCTCCCTCCTCCTCCTCCTCCTCCTCCACCACC
ACATCGGATCTAGAACCGAAGGAGCTAACCAGTGAGGAGCGCTCCAAGAT
GCAGGGAACTATGGCTTTGGTCCTAAAGCACTCGGGAGCGTTTGGGAAAA
TGTCCGGGCCGTTGAAAGGAGAAGAGTTGGGGTTGTTGAAAACCGTGCTG
GGAGACACCATGGCCTTGCTGAGGGGGGAGACGGAGGAGGCATACGGGCA
GAGTGTGGAGGAGTACCTACAGGAAAATCCGGGAGCGATCGAGGAGTTGA
AGCAGGCGCAGGCAGCGGCGGAGGGAGCAGTGAGTCCGTTTTCGGTGCCG
AAGGTGCCCCCGCCGGCGGAGGGGAAGATGAAGAGTTATAGGGAGTTGTT
GGAGGAGGCGAAGAGGAAGAAGGAGGCGGCGTAG
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protein sequence of NO15G02570.1

>NO15G02570.1-protein ID=NO15G02570.1-protein|Name=NO15G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=763bp
MRRQGARTALLRAFLMLFMAAAPTVTWGFSILPLPSSSTTHHPLPRSHTI
ALASQRQPAGGDAGGEFIGHSYDGESESEDPYLKSLKRGQAGRTGAPPAS
RGPVTRTSEEIKAMNDAAKARMEAYARGELPPGFGTPAQAPAGLPPSTPS
SPEGFNPNKFMDFYREHEAKLAAENAAKVAETAARAPPPPLRPPGAPIVE
ATPEPYVPPARYQQQPSPEQMQDQQAVAQQKGTPQNYEQHGGSRFKGVFD
AAASAPGSNPAKERLKQFLLSKYAPDDMSEQAVNYRRLIHFADTGGYSGP
QTEDSDEGYISKLKADAREKIKNNPWQTIRKEDLAPGEKGVPLPPSIPTP
QQQQTQQQQQAAFTAQQTKVTSAWDDDAANYNNRSGQGKGQSTPPPPPGW
GSNPMTTGSTAGAFYFSPSPPPPPPLYDPPPPPPPPSMLPKMGIESSLTQ
LGAYLTAHQAVGERLQGADLDRLEQLLTSVIRMMQEEGGRVPAVVATAAA
AAAATGGGAAAPKARPANGYLVEEKERQLLLSTAAALEMLASLGADEEGA
RAAGAQVPRLLNLLQDVIEVVAGPEQQQEAQRPQQQQQQQQQQQQLQEAV
RSAAPLSPSSPPAPTLITPSSSPSSPSSSSSSSTTTSDLEPKELTSEERS
KMQGTMALVLKHSGAFGKMSGPLKGEELGLLKTVLGDTMALLRGETEEAY
GQSVEEYLQENPGAIEELKQAQAAAEGAVSPFSVPKVPPPAEGKMKSYRE
LLEEAKRKKEAA*
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Synonyms
Publications