NO15G02490, NO15G02490 (gene) Nannochloropsis oceanica

Overview
NameNO15G02490
Unique NameNO15G02490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length639
Alignment locationchr15:682981..683619 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:682981..683619 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G02490 vs. NCBI_GenBank
Match: EWM22329.1 (hypothetical protein Naga_100118g11 [Nannochloropsis gaditana])

HSP 1 Score: 273.9 bits (699), Expect = 4.300e-70
Identity = 136/206 (66.02%), Postives = 161/206 (78.16%), Query Frame = 0 
Query:    1 MSTGEVSAALGQYENRAKTLLTRLGQLAEHLRQILANPLHAHPDWPTIVTHFRVTETQLEQLHRDVQPLLQYFVLRPASHPSRPPPPHADIPLMLSTRSYLEMEGEEAQLQATYWDRIQTQAHVK-----EEDEEDSE--GGVEGLIERVNEAVERVGIVCDWRLAEFKERMNAYKSPGLKVPAWRKDAAARAEEAFAWCEARTDG 200
            MSTG+V+  LG  ENR KTLL RL QLAEHLRQILA+P+HA PDWP+IVTHFRV+ETQL Q HRDVQP LQYFV RPAS+P++PPPP ADIPLMLSTRSYLEMEGEE QLQA YWDR   + HV      +E E+D E  GGVE +IE  N+A+ERV +VCDW  AEF++++ ++KSPGL+ PAWR  AA  AE+ F + EA TDG
Sbjct:    1 MSTGDVAVLLGHLENRVKTLLNRLTQLAEHLRQILADPVHARPDWPSIVTHFRVSETQLRQFHRDVQPFLQYFVFRPASNPAKPPPPQADIPLMLSTRSYLEMEGEEVQLQAAYWDRAHAREHVNHGRDIQEKEKDGEGQGGVEKVIEGFNDALERVDVVCDWLSAEFRDKIKSFKSPGLETPAWRDQAATVAEKGFRYLEAVTDG 206
The following BLAST results are available for this feature:
BLAST of NO15G02490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22329.14.300e-7066.02hypothetical protein Naga_100118g11 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL141nonsL141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR064ngnoR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001321NSK001321Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02490.1NO15G02490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587959gene_4806Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100118g11gene8114Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02490.1NO15G02490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02490 ID=NO15G02490|Name=NO15G02490|organism=Nannochloropsis oceanica|type=gene|length=639bp
ATGTCGACAGGGGAAGTCTCGGCGGCCTTGGGGCAGTACGAGAATCGTGC
CAAGACCCTCCTTACTCGCCTTGGGCAACTCGCGGAGCACTTGAGGCAAA
TTCTGGCTAATCCACTGCACGCCCACCCCGACTGGCCCACTATCGTCACG
CATTTTCGAGTGACAGAAACTCAACTTGAGCAGTTGCATCGGGACGTACA
ACCCCTCTTGCAGTACTTTGTCTTGAGGCCGGCGTCGCACCCGTCAAGGC
CTCCGCCGCCTCATGCAGACATCCCACTTATGTTGTCGACTCGCTCCTAC
CTCGAGATGGAGGGTGAAGAGGCACAGCTGCAAGCGACTTATTGGGACAG
GATCCAGACGCAGGCACACGTGAAAGAAGAGGACGAAGAAGATTCGGAGG
GAGGGGTGGAAGGGTTGATAGAGAGAGTGAACGAGGCGGTAGAACGTGTA
GGGATAGTGTGCGATTGGCGTTTGGCAGAGTTCAAGGAGAGGATGAATGC
GTATAAGAGCCCAGGGCTTAAGGTGCCGGCATGGCGAAAGGATGCGGCGG
CAAGGGCGGAGGAGGCGTTTGCATGGTGTGAAGCCAGGACGGATGGACGG
GTGGTACGTCCCTTACCGGCAGCAGCACCCAGGAGATGA
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protein sequence of NO15G02490.1

>NO15G02490.1-protein ID=NO15G02490.1-protein|Name=NO15G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MSTGEVSAALGQYENRAKTLLTRLGQLAEHLRQILANPLHAHPDWPTIVT
HFRVTETQLEQLHRDVQPLLQYFVLRPASHPSRPPPPHADIPLMLSTRSY
LEMEGEEAQLQATYWDRIQTQAHVKEEDEEDSEGGVEGLIERVNEAVERV
GIVCDWRLAEFKERMNAYKSPGLKVPAWRKDAAARAEEAFAWCEARTDGR
VVRPLPAAAPRR*
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Synonyms
Publications