NO15G02330, NO15G02330 (gene) Nannochloropsis oceanica

Overview
NameNO15G02330
Unique NameNO15G02330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1229
Alignment locationchr15:647373..648601 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:647373..648601 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO15G02330 vs. NCBI_GenBank
Match: EWM22375.1 (hypothetical protein Naga_100066g26 [Nannochloropsis gaditana])

HSP 1 Score: 156.4 bits (394), Expect = 1.200e-34
Identity = 88/184 (47.83%), Postives = 111/184 (60.33%), Query Frame = 0 
Query:   69 RLSRTSNGSSRSIQHTYYRPAALFSIRPDVIHGFHVLLSSPEADPTVAYYSILDGNILPMLLGV-TPTPPFIPRALLPAMARTRNYLAGFAGDERKEREIVYGYATIFRTLDEHHRELQAGPCEDWWDWGGEDGGRREGGLCVWCWAPCRFVRLKLCCGEGRMRRRVLRVVEDAFEAMEKELEA 252
            R  R  + +S    H +Y   ALF + P+V+ GF  LL+SPEADPTVAYY+++DGN+L M LG  TP PP    + LP++ARTR  L    GD RKERE+VY YAT+FRTL+E+HRE                   REG  C+ C  PCR    + CC E RMR+  LRVVE AF  M++EL A
Sbjct:  335 RDKRHPSSASHPAPHAFYDADALFRLPPEVVRGFSALLASPEADPTVAYYAVIDGNVLAMCLGASTPFPP----SHLPSLARTRALLVRVQGDSRKEREVVYAYATVFRTLEEYHRE-------------------REGRCCL-CLPPCRHALHRWCC-ERRMRKETLRVVEGAFRTMKRELGA 493
The following BLAST results are available for this feature:
BLAST of NO15G02330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Position :
0
Zoom :
x 1
100200300400500600700800900100011001200SequenceEWM22375.1
Match NameE-valueIdentityDescription
EWM22375.11.200e-3447.83hypothetical protein Naga_100066g26 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL147nonsL147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001364NSK001364Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02330.1NO15G02330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100066g26gene8076Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02330.1NO15G02330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02330 ID=NO15G02330|Name=NO15G02330|organism=Nannochloropsis oceanica|type=gene|length=1229bp
ATGAGGCGAGGCTTCATGCTGCGACGGTGCAGCAGgtgaacgttgggggt
aggcgtgagtatcacggtagcacggagacaatacaaacattctgtgaggc
catataggcctttgtatccttttcttgtacccggtttattagtgtcacca
gatcaagccgaatgagactacagacacttgccatgggacggcgggggggg
cgtaaacgagttaggaaagaatgaagttgactgcgtcaaccgcgaatatg
gacggtggtaaatgatgcgtcacctccgcttagactgaatgattccttta
cttacccctctcgtccccaccccttcctcccccctcccccttcaaacagG
CAGGCACATAAGCATTTAAAAAAAGACACCCATCCTCCTCCTCTTCGGTA
TGGAAAACTCCCTTTCCTCCTCCCGCCCGCCTTCCCCCCCCCCCAACCTT
CTCCCCCCCCACACGGCGGCGCGGCAGCAGCAATCCTCCACCTCCACCAA
CAACACCCTCCCTCAGGACGCCTCAGTCGCACCAGCAATGGTAGCAGTAG
GAGCATCCAGCATACCTATTATCGCCCCGCGGCCTTATTTTCCATTCGCC
CTGATGTAATTCATGGATTTCATGTCCTCCTTTCCTCCCCCGAGGCAGAC
CCCACCGTGGCCTACTATTCGATCTTGGACGGAAATATCCTCCCGATGCT
CTTAGGTGTTACGCCCACTCCCCCCTTCATCCCCCGGGCCCTTCTTCCGG
CCATGGCGAGGACGAGAAACTACTTGGCAGGGTTTGCGGGGGATGAGAGG
AAGGAGAGGGAGATAGTGTATGGGTACGCTACAATTTTTAGGACCCTGGA
TGAGCACCATCGTGAGTTACAGGCGGGTCCGTGTGAGGACTGGTGGGACT
GGGGGGGCGAAGACGGAGGGAGGAGGGAGGGGGGATTGTGTGTCTGGTGT
TGGGCGCCGTGTAGATTTGTGCGGCTCAAGTTGTGTTGTGGGGAAGGGCG
GATGAGGAGGAGGGTACTCCGGGTGGTGGAGGATGCGTTTGAAGCGATGG
AGAAGGAGCTGGAGGCATGGTGAGAGAGGGGGAGGGCGGTGGACAAGTCA
GGGAAAATGTGTATAATATATACATATATATATATACTTATATGATACAT
ACATATATATACTTATATGATTAGGGTATACGGCATAGAAGAAATATCAA
GGAAGAAAAGACGGTAGGACAACAGGAAG
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protein sequence of NO15G02330.1

>NO15G02330.1-protein ID=NO15G02330.1-protein|Name=NO15G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MRRGFMLRRCSRQAHKHLKKDTHPPPLRYGKLPFLLPPAFPPPQPSPPPH
GGAAAAILHLHQQHPPSGRLSRTSNGSSRSIQHTYYRPAALFSIRPDVIH
GFHVLLSSPEADPTVAYYSILDGNILPMLLGVTPTPPFIPRALLPAMART
RNYLAGFAGDERKEREIVYGYATIFRTLDEHHRELQAGPCEDWWDWGGED
GGRREGGLCVWCWAPCRFVRLKLCCGEGRMRRRVLRVVEDAFEAMEKELE
AW*
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Synonyms
Publications