NO15G02270, NO15G02270 (gene) Nannochloropsis oceanica

Overview
NameNO15G02270
Unique NameNO15G02270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3338
Alignment locationchr15:629518..632855 +

Link to JBrowse

Properties
Property NameValue
DescriptionZf-CCHC type zinc finger protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:629518..632855 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036875Znf_CCHC_sf
IPR001878Znf_CCHC
Homology
The following BLAST results are available for this feature:
BLAST of NO15G02270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL147nonsL147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001369NSK001369Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02270.1NO15G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565557gene_4782Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02270.1NO15G02270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02270 ID=NO15G02270|Name=NO15G02270|organism=Nannochloropsis oceanica|type=gene|length=3338bp
CCCCTCCTCCCCCCTCCCCTTCGCCCCCGTCGCTCGGCATCCTCCTCGTG
AACAAATAAAATCTCCTCTTATTAAATGCAGTCGCCACCACTGTCGGATC
CGGCTGCAACTGCGCACGCATTTCCTCGACACTACTGGCGGTCTTGCCCT
TGTTCAATGCCTTAACCAGCTGACTGTCCACTCTAGGGACCCCCTGAAAC
AAACACACCCGCAAAAACCGCTCCCCACTCTCAATCTTCCCCAACACCTT
CACCACCCGATTCGTCTCCACATTCACAATCTTAATCCCGACCAAACTTG
CGTACACCAAAAAATGACCCGTCTCATCAAATACTGCATTCCCCCTCCCC
CCCACCTCCGCCCGTGCCCCCTCTAGCTCATGTTCCACGGCGCTTCGCCT
CCCGAAATCAATCGTGTCCAGCCCCAACATTCCCGTCGCCATAGCCGCCT
CCGCAACCTCCATTCCCTCATTATACACCCTCATTAACTTTCCCTTCCTC
AAGTCGAATACCCGGATTTGACGATCCTTCCCCACCACCGCCAGTTTTCC
CCCATCCTTCGAGACATCCAAACTCGTCGCATAAGTCTTTTTCTTCATCA
ATTCAAACAAATCAGAGTCCAACTTACTCTTAAACCCCACTTTTGCCCGC
GGGAAGCCATAGCAAGCCTCCTTCCCCTCCCCCTCCAAGTCGGTAGACCA
GTACTCCAGCATGCCTTTCCCATCCCCCGACACCATCAATGCATCCGCGC
ATGAAAACGCCAACGCCGTCACCGGCGCAGCATGCAAGGATGGCAAGACA
TGAATAGGCTCTTGACTCCCATCAGATCGATAGATTCTCACGCAAGGGCT
GTCATCATCAGCAACTACCAGCCTCCCATGTGCCTCCCCCGGGCGATGAC
ACCACGCCGCATGCGTCGGCGCATACTCTACATCCATCATATACGTCAAA
TCAAACGTCAGGACATCATAAAATTTTACAGCTTTATCCACCCCCGTCGT
CGCAAGCCGCAGTCCATCCGCACTCACGGCCAACCCGCGAACACCCCCCA
GATGAGCGTGGTAATGCTTGACAAATTCGAGGCCATCAGGCATCTTTTTC
CAGAATTTGACATGTCCGTCCTCCGACGCCGTCACCAAAAAGTCCGTCCG
TGGGGTAAAGGCACAAAACGTGACGATATCTCGATGCATGTAACTCTTTT
CGTACATGTCCGCATTGGGCAACGCGGCAACAAAAGCCTCCTCGTGGTCG
AGCTTCCGCTTCTTCTTCTTCTTCTTGGCCTTCAGTGTAGGGCCAACCTC
GTCCTCGTCCTCGTTCTCTTCATGACCAGCTGCAGCGGCACTGCCAGCAG
CCACGGGCACGGGGCCAAAGTCGTCATCGCTGTCTTCGTCGTCGCTCGTG
TGGGCGGGGGGAGGGGGAGGCGGAGGAGGGGCCGGGCCATCGTCCTCGTC
GTCGCTGCTGTTTTCGACCCGCTTTTGCTTGCTGCTCCTCCTAGACATTA
TATTTCCCCTCCGGTATCTGTGTATTCGTGGGACGGAGAGTGTGAGAGGC
GTGTGTGATATTGCAAGACGAAGGGAGAAGAGACGGAGAAGGAGGAGGGA
AGCGAGGATGCGATACTTCTAGTAAATCATGTCATTTTTCTACTAAATGC
ACCCACAGAGAAAGCGTACGGCCTTCAAAATAACGACGACGACCAAGAGG
ACGCCGAAGGCATGGCAGTTGACGAACAGgtcagtgcacagaggggtttg
gtggtgagatcataagactggagcgaggatgctgagtggtggcggagatg
gcaacgatcccatggtgcgacaagcaagtcagtctctttgtttttgcgca
gtgcggcgccgcccacccgagccatggcttcacttacccatcggttgggt
caatagatcatcgctcgagcggtcgtggtgttgcctctacatcataaggc
atgtccatacaacaatctcgacctccccaccctttgcccagcaccaccac
cggattaacccgatttcatcaactcctgcggaaagggcacaaatgttatc
tgacgccgagtttatcccttcacatgacattcagACAAAGATCATTACCA
ACAAGGGCGAACGGAAGCGCCTAGCCAAAAAGCGGCGGTTGGAAGCGGAG
GCTGCTGCTGGTGGTGGCGGCGGTGCCAACAACAACAATGGCGGCGGTGC
CAACAACAAGAGCAATACAAATGAAACAGCCACAGCCTCCACCGACAACA
AGAAATCTAAGCCCAAAATGACGTACGAAGAACGCCGAGCCAAGTTTTTG
CGGCCCAAGCAGAGCGATCGAGGGACTTTTAGTGGACGAGGACGAGGAGG
AGGAGTAGGAAGGGGAGGGTTCCAGCACGGAAATAGCAACCGGCCTGGAT
CGCACAAGTGGAAGGCGCTGAAAACGTTTTGTTATGGGTGTAGACAGCAA
GGACATATGTTGCAGGATTGTCCAGAGGCAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGCCGAGGCCGCGGGCAGCAGAAGCAGTGCCAAGAGGATCT
GTTTTAATTGCGGTTCGATGTTGCATCGACTGGCGCACTGTCCGCGACCG
CGTGTGAATGGTGGGTCTACGTACGCGACGTGCTTTGTGTGCGGGGAGCA
GGGGCATTTGTCTTCTATGTGCGCAAAGAATGAGAAGGGGTTGTACCCCA
AGGGAGGGGCCTGCCATAGGTGTGGAAGGAAGGACCATTTGGCGGCGAGG
TGTCCGACGAAGGAGAGGGAGGAGGGGGAAGGAAAGAAGGAAGAGAAAGA
AGGAGAGGAGGAGGAGGAGGAGGAGGAAGAGAAAGAGAGAGGGGTGGAAG
AAGACGACAGGGAGGAGGAGGATGAGGAGGTGCCTACAACCGCTATAACT
AAAGCGGTAGCAAAAAGCAAGGGAAAAGTGGAGGAGCGAAATACGAAGGG
GAAAGAGATGGCGTCGACCAGCGCCAAGAAGAGAGCAGCTGTGACAGCAA
CAAAGCCCGTCAAACCCCAAGGAGGGGATGATTTAAACGATGACGATTTT
TTGTATGAGGACATGGATGGCGATGGTAGTCAGGAAGAGGAAGGAGAAGA
AGTGGCGGGAGCGCCATCGCAACACAAGACGGGCAGCGGTGAGGATGGGA
GAGAAGGAAGGAGGGGTCGAGGAGGGAGAGAAACAGGAAGGGGAGGGAGG
GGAGGGAGGGGGGGACGAGGATATGGTTGTAGTCGTGGGGCAGAGATGCG
ATCACGGGGAGGAGAGAGCAAAGGAGAGGGAGCATCGGGGCCGAGTAAGA
AGAGGGTCAAGTCGACACCCAAAACGGTGATGTTTTGA
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protein sequence of NO15G02270.1

>NO15G02270.1-protein ID=NO15G02270.1-protein|Name=NO15G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=424bp
MAVDEQTKIITNKGERKRLAKKRRLEAEAAAGGGGGANNNNGGGANNKSN
TNETATASTDNKKSKPKMTYEERRAKFLRPKQSDRGTFSGRGRGGGVGRG
GFQHGNSNRPGSHKWKALKTFCYGCRQQGHMLQDCPEAGGGGGGGGGGAE
AAGSRSSAKRICFNCGSMLHRLAHCPRPRVNGGSTYATCFVCGEQGHLSS
MCAKNEKGLYPKGGACHRCGRKDHLAARCPTKEREEGEGKKEEKEGEEEE
EEEEEKERGVEEDDREEEDEEVPTTAITKAVAKSKGKVEERNTKGKEMAS
TSAKKRAAVTATKPVKPQGGDDLNDDDFLYEDMDGDGSQEEEGEEVAGAP
SQHKTGSGEDGREGRRGRGGRETGRGGRGGRGGRGYGCSRGAEMRSRGGE
SKGEGASGPSKKRVKSTPKTVMF*
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Synonyms
Publications