NO15G02230, NO15G02230 (gene) Nannochloropsis oceanica

Overview
NameNO15G02230
Unique NameNO15G02230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1632
Alignment locationchr15:622296..623927 -

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Properties
Property NameValue
DescriptionG patch domain-containing protein 8
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:622296..623927 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036236Znf_C2H2_sf
IPR000467G_patch_dom
Homology
BLAST of NO15G02230 vs. NCBI_GenBank
Match: EWM22360.1 (g patch domain-containing protein 8 [Nannochloropsis gaditana])

HSP 1 Score: 297.0 bits (759), Expect = 1.200e-76
Identity = 160/245 (65.31%), Postives = 183/245 (74.69%), Query Frame = 0
Query:   33 KPKSDGAVAVPSSGSMSTSSISPVAPLPPHST--EADNRDDTMSYDDIFETRASSMAISSSSTKISFKRYQTTGYLDHGSFSQASVDTPLADDNRGMRLLLKMGWKKDTPLGKDGITGLVAPLQLVDANVGGEGLGKGREYDLTAEEATKSRRLLDVEVVETVEIKEERAIKAAREETLKQELKAVVKEFYCDICNKQYTGVSEFAVHLDGYEHGHTKRLKETKEANRARAAGKAGSKAKQDQLR 276
            KP+  GA   P      TS++ P +      T   A   DDT SY DI ETRASSMA+ +++ ++SFKRY+T GYLDHG+F QA++DTPLADDNRGM+LL+KMGWKKDTPLG+ G  GLV PLQLVDA +GGEGLGKGREYD TAEEAT+SRRLLDVEV ETV IKEERA+KAA+EE LKQELKAVV+EFYCDIC KQY GVS+FAVHL GYEHGHTKRLKE                 KQDQ R
Sbjct:    6 KPEEGGAAKGP------TSALPPASDWKAAHTGSSAHIDDDTTSYTDILETRASSMALPAATERVSFKRYETAGYLDHGTFDQATIDTPLADDNRGMKLLMKMGWKKDTPLGRAGGNGLVVPLQLVDAGLGGEGLGKGREYDTTAEEATRSRRLLDVEVKETVAIKEERALKAAKEEALKQELKAVVREFYCDICGKQYAGVSDFAVHLSGYEHGHTKRLKEXXXXXXXXXXXXXXXXXKQDQAR 244          
BLAST of NO15G02230 vs. NCBI_GenBank
Match: CBJ31403.1 (WW domain, G-patch, C2H2 zinc finger [Ectocarpus siliculosus])

HSP 1 Score: 146.0 bits (367), Expect = 3.300e-31
Identity = 80/177 (45.20%), Postives = 111/177 (62.71%), Query Frame = 0
Query:   97 FKRYQTTGYLDHGSFSQASVDTPLADDNRGMRLLLKMGWKKDTPLGKDGITGLVAPLQLVDANVGGEGLGKGREYDLTAEEATKSRRLLDVEVVETVEIKEERAIKAAREETLKQELKAVVKEFYCDICNKQYTGVSEFAVHLDGYEHGHTKRLKETKEANRARAAGKAGSKAKQDQ 274
            FKR +T GY+D  S   AS+D P+ ++NRG RLL KMGWK    LG  G  G+  P+ ++   V   GLGK  E D   +EA + R+ LD EVVET ++K +R  KA R+ET+K++++ + KEFYC+ C KQY  V E + H   Y+H H KRLKE  EA +AR  GK  ++ K+ +
Sbjct:   87 FKRNETQGYIDTQSLDAASLDKPIGEENRGFRLLTKMGWKLGQGLGAKG-DGITVPV-VLGTQVATLGLGKSAEDDRYTDEAARERKKLDSEVVETADMKAKRLEKAVRQETIKEQVQEMNKEFYCETCGKQYKNVGEMSNHYSSYDHHHVKRLKEAAEAEKAR-RGKTFNRDKEQR 260          
BLAST of NO15G02230 vs. NCBI_GenBank
Match: XP_005854993.1 (d111 g-patch domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >EKU21369.1 d111 g-patch domain-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 124.8 bits (312), Expect = 7.800e-25
Identity = 67/96 (69.79%), Postives = 72/96 (75.00%), Query Frame = 0
Query:  180 KSRRLLDVEVVETVEIKEERAIKAAREETLKQELKAVVKEFYCDICNKQYTGVSEFAVHLDGYEHGHTKRLKETKEANRARAAGKAGSKAKQDQLR 276
            +SRRLLDVEV ETV IKEERA+KAA+EE LKQELKAVV+EFYCDIC KQY GVS+FAVHL GYEHGHTKRLKE                 KQDQ R
Sbjct:    1 RSRRLLDVEVKETVAIKEERALKAAKEEALKQELKAVVREFYCDICGKQYAGVSDFAVHLSGYEHGHTKRLKEXXXXXXXXXXXXXXXXXKQDQAR 96          
BLAST of NO15G02230 vs. NCBI_GenBank
Match: PRP83015.1 (G patch domain-containing protein 8-like [Planoprotostelium fungivorum])

HSP 1 Score: 118.6 bits (296), Expect = 5.600e-23
Identity = 69/162 (42.59%), Postives = 98/162 (60.49%), Query Frame = 0
Query:  100 YQTTGYLDHGSFSQASVDTPLADDNRGMRLLLKMGWKKDTPLGKDGITGLVAPLQLVDANVGGEGLGKGREYDLTAEEATKSRRLLDVEVVETVEIKEERAIKAAREETLKQELKAVVKEFYCDICNKQYTGVSEFAVHLDGYEHGHTKRLKETKEANRARA 262
            ++ T  LD  SF Q S+DTPL   N+G +L+LKMGWKKDT LG  G  G+V P++L  A +G  GLGK  + DL+  E  +  R+L  EV +TVE  ++R +   ++  L+ EL  + + F CD+C+KQY    E   H + YEHGH  R KE ++ N+  A
Sbjct:   44 HRITKDLDTNSFQQISMDTPLGSTNKGYQLMLKMGWKKDTGLG-SGSRGIVDPVRL-SATIGKLGLGK-LDQDLSYTENIERPRMLG-EVEDTVETVKKREVLVEKQTKLEDELTKIGESFRCDLCSKQYKNSMELQAHFNSYEHGHKHRFKEMQQMNKRNA 201          
BLAST of NO15G02230 vs. NCBI_GenBank
Match: OAD07709.1 (C2H2-type zinc finger transcription factor [Mucor circinelloides f. lusitanicus CBS 277.49])

HSP 1 Score: 113.6 bits (283), Expect = 1.800e-21
Identity = 62/163 (38.04%), Postives = 94/163 (57.67%), Query Frame = 0
Query:   98 KRYQTTGYLDHGSFSQASVDTPLADDNRGMRLLLKMGWKKDTPLGKDGITGLVAPLQLVDANVGGEGLGKGREYDLTAEEATKSRRLLDVE--VVETVEIKEERAIKAAREETLKQELKAVVKEFYCDICNKQYTGVSEFAVHLDGYEHGHTKRLKETKEANR 259
            ++  + GY+D+ + +Q S++T + +DN G RLL KMGW+    LG  G  G + P++ ++      G+GK  EY  T    T  R+ LD E  + ET   K ER  +  +++ + QELK V K FYC++C+KQY  + E+  HL  Y+H H KR K+ KE  R
Sbjct:   13 EKQPSAGYIDYETTAQVSMETHIPEDNIGYRLLQKMGWQAGRGLGSQG-QGRIDPIR-IELKDDSLGVGKAEEYTTTHVSTTAKRKALDSEKQLEETEIQKMEREYRVEKKQAIAQELKEVKKAFYCELCDKQYKNIGEYEQHLQSYDHHHKKRFKDMKENTR 173          
BLAST of NO15G02230 vs. NCBI_GenBank
Match: PIA60652.1 (hypothetical protein AQUCO_00300283v1 [Aquilegia coerulea])

HSP 1 Score: 112.8 bits (281), Expect = 3.100e-21
Identity = 68/155 (43.87%), Postives = 91/155 (58.71%), Query Frame = 0
Query:  100 YQTTGYLDHGSFSQASVDTPLADDNRGMRLLLKMGWKKDTPLGKDGITGLVAPLQ--LVDANVGGEGLGKGREYDLTAEEATKSRRLLDVEVVETVEIKEERAIKAAREETLKQELKAVVKEFYCDICNKQYTGVSEFAVHLDGYEHGHTKRLKE 253
            ++ T  LD  +  QAS+DT L   N G RLL KMGW K   LGKD   G+V P++  + D  +   G+GK  E D    E    R+ LDVE+ ET E  ++R + A RE+ ++ E+K + K FYCD+CNKQY    EF VHL  Y+H H KR K+
Sbjct:   39 HKPTENLDLDNVEQASLDTQLTSSNIGFRLLQKMGW-KGKGLGKDE-QGMVEPIKAGMRDPKL---GIGKQEEDDFFTAEENIQRKRLDVELEETEEHVKKREVIAEREQKIQSEVKEIRKVFYCDLCNKQYKLAMEFEVHLSSYDHNHRKRFKD 188          
BLAST of NO15G02230 vs. NCBI_GenBank
Match: EPB83112.1 (hypothetical protein HMPREF1544_10150 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 110.5 bits (275), Expect = 1.500e-20
Identity = 62/163 (38.04%), Postives = 94/163 (57.67%), Query Frame = 0
Query:   98 KRYQTTGYLDHGSFSQASVDTPLADDNRGMRLLLKMGWKKDTPLGKDGITGLVAPLQLVDANVGGEGLGKGREYDLTAEEATKSRRLLDVE--VVETVEIKEERAIKAAREETLKQELKAVVKEFYCDICNKQYTGVSEFAVHLDGYEHGHTKRLKETKEANR 259
            ++  +TGY D+ +  Q S++T + ++N G +LL KMGW+    LG  G  G + P++ ++      G+GK  EY  T    T  R+ LD E  + ET   K ER  +  +++ + QELK V K FYC++C+KQY  +SE+  HL  Y+H H KR K+ KE  R
Sbjct:    4 EKQPSTGYSDYETTVQVSMETHIPENNIGYKLLQKMGWQAGKGLGSQG-QGRIDPIR-IELKDDSLGVGKAEEYTSTHVSTTAKRKALDSEKQLEETEIQKMEREYQVEKKQAIAQELKEVKKAFYCELCDKQYKNISEYEQHLQSYDHHHKKRFKDMKENTR 164          
BLAST of NO15G02230 vs. NCBI_GenBank
Match: KHN43374.1 (G patch domain-containing protein 8 [Glycine soja])

HSP 1 Score: 110.5 bits (275), Expect = 1.500e-20
Identity = 65/158 (41.14%), Postives = 92/158 (58.23%), Query Frame = 0
Query:  100 YQTTGYLDHGSFSQASVDTPLADDNRGMRLLLKMGWKKDTPLGKDGITGLVAPLQ--LVDANVGGEGLGKGREYDLTAEEATKSRRLLDVEVVETVEIKEERAIKAAREETLKQELKAVVKEFYCDICNKQYTGVSEFAVHLDGYEHGHTKRLKETKE 256
            ++ T  +D  +  QAS+DT +   N G +LL KMGW K   LGKD   G++ P++  + D  +   G+GK  E D    E    R+ LDVE+ ET E  ++R + A RE+ ++ E+K + K FYCD+CNKQY    EF  HL  Y+H H KR K+ KE
Sbjct:   44 HRPTENVDLDNVEQASLDTQITSSNIGFKLLQKMGW-KGKGLGKDE-QGIIEPIKSGIRDPRL---GVGKQEEDDFFTAEENIQRKKLDVELEETEEHVKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKE 196          
BLAST of NO15G02230 vs. NCBI_GenBank
Match: PIA60653.1 (hypothetical protein AQUCO_00300283v1 [Aquilegia coerulea])

HSP 1 Score: 110.5 bits (275), Expect = 1.500e-20
Identity = 67/152 (44.08%), Postives = 89/152 (58.55%), Query Frame = 0
Query:  100 YQTTGYLDHGSFSQASVDTPLADDNRGMRLLLKMGWKKDTPLGKDGITGLVAPLQ--LVDANVGGEGLGKGREYDLTAEEATKSRRLLDVEVVETVEIKEERAIKAAREETLKQELKAVVKEFYCDICNKQYTGVSEFAVHLDGYEHGHTKR 250
            ++ T  LD  +  QAS+DT L   N G RLL KMGW K   LGKD   G+V P++  + D  +   G+GK  E D    E    R+ LDVE+ ET E  ++R + A RE+ ++ E+K + K FYCD+CNKQY    EF VHL  Y+H H KR
Sbjct:   39 HKPTENLDLDNVEQASLDTQLTSSNIGFRLLQKMGW-KGKGLGKDE-QGMVEPIKAGMRDPKL---GIGKQEEDDFFTAEENIQRKRLDVELEETEEHVKKREVIAEREQKIQSEVKEIRKVFYCDLCNKQYKLAMEFEVHLSSYDHNHRKR 185          
BLAST of NO15G02230 vs. NCBI_GenBank
Match: GAN11684.1 (G patch domain-containing protein 8-like [Mucor ambiguus])

HSP 1 Score: 109.8 bits (273), Expect = 2.600e-20
Identity = 61/160 (38.12%), Postives = 93/160 (58.13%), Query Frame = 0
Query:   98 KRYQTTGYLDHGSFSQASVDTPLADDNRGMRLLLKMGWKKDTPLGKDGITGLVAPLQLVDANVGGEGLGKGREYDLTAEEATKSRRLLDVE--VVETVEIKEERAIKAAREETLKQELKAVVKEFYCDICNKQYTGVSEFAVHLDGYEHGHTKRLKETKE 256
            ++  +TGY D+ +  Q S++T + ++N G +LL KMGW+    LG  G  G + P++ ++      G+GK  EY  T    T  R+ LD E  + ET   K ER  +  +++ + QELK V K FYC++C+KQY  +SE+  HL  Y+H H KR K+ KE
Sbjct:   18 EKQPSTGYSDYEATIQVSMETHIPENNIGYKLLQKMGWQAGRGLGSQG-QGRIDPIR-IELKDDSLGVGKAEEYTTTHVSTTAKRKALDSEKQLEETEIQKIERQYQVEKKQAIAQELKEVKKAFYCELCDKQYKNISEYEQHLQSYDHHHKKRFKDMKE 175          
The following BLAST results are available for this feature:
BLAST of NO15G02230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22360.11.200e-7665.31g patch domain-containing protein 8 [Nannochlorops... [more]
CBJ31403.13.300e-3145.20WW domain, G-patch, C2H2 zinc finger [Ectocarpus s... [more]
XP_005854993.17.800e-2569.79d111 g-patch domain-containing protein, partial [N... [more]
PRP83015.15.600e-2342.59G patch domain-containing protein 8-like [Planopro... [more]
OAD07709.11.800e-2138.04C2H2-type zinc finger transcription factor [Mucor ... [more]
PIA60652.13.100e-2143.87hypothetical protein AQUCO_00300283v1 [Aquilegia c... [more]
EPB83112.11.500e-2038.04hypothetical protein HMPREF1544_10150 [Mucor circi... [more]
KHN43374.11.500e-2041.14G patch domain-containing protein 8 [Glycine soja][more]
PIA60653.11.500e-2044.08hypothetical protein AQUCO_00300283v1 [Aquilegia c... [more]
GAN11684.12.600e-2038.13G patch domain-containing protein 8-like [Mucor am... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL147nonsL147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001373NSK001373Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02230.1NO15G02230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527417gene_4776Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100066g17gene8069Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02230.1NO15G02230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02230 ID=NO15G02230|Name=NO15G02230|organism=Nannochloropsis oceanica|type=gene|length=1632bp
ATGGCCAACTCCAGCCCTAGTAGCAGCACTAGGATGCCATTGCTACCACA
ACCACCTGATGACGTTGCATTGCGAGACAATGGCAGCATGGAGCGCAAGC
CAAAGTCGGACGGTGCCGTAGCAGTGCCAAGCAGCGGTAGCATGAGCACC
AGCAGCATTTCACCAGTAGCACCTCTACCTCCTCACTCCACTGAGGCAGA
CAATCGAGACGACACAATGTCGTACGACGACATCTTTGAGACTCGTGCTT
CCTCCATGGCCATAAGTAGCAGCAGCACCAAAATCAGTTTCAAACGCTAC
CAAACCACGGGCTATTTAGACCATGGCTCCTTCAGTCAAGCCTCTGTCGA
TACGCCCTTGGCTGACGACAACCGCGGCATGAGGCTCCTTCTTAAAATGG
GGTGGAAGAAGGACACGCCTTTGGGAAAAGATGGTATCACTGGCTTAGTG
GCACCATTGCAGCTCGTCGATGCGAACGTGGGAGGGGAAGGGTTGGGGAA
GGGGCGAGAGTATGACCTGACAGCAGAGGAAGCAACGAAAAGCCGTCGAC
TGCTAGACGTCGAAGTAGTAGAGACAGTGGAGATAAAAGAAGAGCGAGCC
ATTAAAGCGGCCAGGGAGGAGACGCTCAAGCAGGAATTGAAAGCGGTTGT
CAAGGAATTTTACTGCGACATATGTAACAAGCAATATACGGGCGTCTCCG
AATTTGCGGTCCACCTCGACGGTTACGAGCACGGGCATACGAAACGCTTG
AAGGAAACAAAAGAGGCAAACAGAGCGCGAGCAGCGGGCAAGGCGGGGAG
TAAAGCAAAGCAGGATCAATTGCGGCAGGAAAAGGAGATGCAAAGACGCA
TCGCTGCAGCTGCGGGAAAGCCCGGCGGTGCTGCTCCTGCGGTTGCAGCT
CCTCCTGTTGGCAGTGGTCTCCCCCAACCACCACCACCGCCACCACCACC
AGCAGCGCACACGGTTCCCCTTACATTCGCTCCAAATATTCAACAACAGC
ATCACCACCACCGCCACCACTACCACCAGCATAATTCCTACTCTCCTTCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TTCTCCTCCTCCTCCTCCTCCTCCTCTGCACGATCACCATTCCCACCACG
GCGGCCCGCACGCTTTTTCTGGTTCGGGCTTCCACCAACACCAACAATAT
AGCCACCAATCTCTTCAACCTTCATACCACCACCCCCATCATCACCCTCA
CCAGCAGCAGCACAAGCACCTGCAGCAGCCACACATGCACGCCAACCCCT
ACACAAATCAACATTACTACCAAGGCCCACCACAAGACCATCATCCATCT
GCGGCTCCTTCTCCCGCTCCTCCTCCACCACCACCATCTCACCTTCAACC
ACCGCCACCACCTATCCCCCCCTCCCTACCTCCTCCTCTATCACCTGCCG
CACAAGCCATCACCCTCCCTCCAACCCAGGATCGAGCACCTGTCAAGCTC
TCGATGAGCTTCGGGATGACCAAGACCAAGAAAAAGTCAGGCAGGTAAAA
ACCCCTTCTTCACAAATCAAAGTACAATTATGCCAATGAAGCGAACATAT
TCGAGGTATGAAAGAACGTGCGAACGCCGACA
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protein sequence of NO15G02230.1

>NO15G02230.1-protein ID=NO15G02230.1-protein|Name=NO15G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=516bp
MANSSPSSSTRMPLLPQPPDDVALRDNGSMERKPKSDGAVAVPSSGSMST
SSISPVAPLPPHSTEADNRDDTMSYDDIFETRASSMAISSSSTKISFKRY
QTTGYLDHGSFSQASVDTPLADDNRGMRLLLKMGWKKDTPLGKDGITGLV
APLQLVDANVGGEGLGKGREYDLTAEEATKSRRLLDVEVVETVEIKEERA
IKAAREETLKQELKAVVKEFYCDICNKQYTGVSEFAVHLDGYEHGHTKRL
KETKEANRARAAGKAGSKAKQDQLRQEKEMQRRIAAAAGKPGGAAPAVAA
PPVGSGLPQPPPPPPPPAAHTVPLTFAPNIQQQHHHHRHHYHQHNSYSPS
PPPPPPPPPPPPPPPPPSPPPPPPPLHDHHSHHGGPHAFSGSGFHQHQQY
SHQSLQPSYHHPHHHPHQQQHKHLQQPHMHANPYTNQHYYQGPPQDHHPS
AAPSPAPPPPPPSHLQPPPPPIPPSLPPPLSPAAQAITLPPTQDRAPVKL
SMSFGMTKTKKKSGR*
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Synonyms
Publications