NO15G02130, NO15G02130 (gene) Nannochloropsis oceanica

Overview
NameNO15G02130
Unique NameNO15G02130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length998
Alignment locationchr15:597050..598047 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:597050..598047 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO15G02130 vs. NCBI_GenBank
Match: XP_005854559.1 (hypothetical protein NGA_0240200 [Nannochloropsis gaditana CCMP526] >EKU21806.1 hypothetical protein NGA_0240200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 303.9 bits (777), Expect = 4.300e-79
Identity = 155/215 (72.09%), Postives = 179/215 (83.26%), Query Frame = 0
Query:    2 PHPTPSGSVLVGLGVFLLSSLLCTSACFFVANEYVHHATVVRVEKDPNYQELRAFDDEEEEGGSEGAWGGARRGP--GRGSSPIDSVYVRGGGIESDIWDPIPRITVIERSRFLIIFSKLIRAMLVLAVGWLVLVAVAVLLYTPQMPDVNVCNTALDWGSIFSGFEKLKLEADYQLLLSVYNPNRLDVAITSGQGVFKHDHEPIGQVEISPFVIK 215
            PHP PSGSVLVGLG+FLL+SL CTSACFFVANEYV HATVVR+EKDPNYQEL AFD+EE     EG  G +R GP  G G   +     +G G E D+WDP+PRI V ERSRFL++ S++IRA L+L + WLV+VAVAV LYTPQ+PDVNVCNTALDWGS+F+G E+LKLEADYQLLLSVYNPNRLDVAI+SGQGVFKHDHE IGQVE++PF+IK
Sbjct:  131 PHPAPSGSVLVGLGIFLLTSLFCTSACFFVANEYVKHATVVRMEKDPNYQELLAFDEEE-----EGLAGRSRSGPSKGGGEGVLGERRPQGSGGE-DVWDPVPRIRVEERSRFLVVCSQVIRAALILTLAWLVMVAVAVFLYTPQVPDVNVCNTALDWGSLFTGLERLKLEADYQLLLSVYNPNRLDVAISSGQGVFKHDHEAIGQVEVAPFLIK 339          
BLAST of NO15G02130 vs. NCBI_GenBank
Match: EWM22365.1 (hypothetical protein Naga_100066g6 [Nannochloropsis gaditana])

HSP 1 Score: 303.9 bits (777), Expect = 4.300e-79
Identity = 155/215 (72.09%), Postives = 179/215 (83.26%), Query Frame = 0
Query:    2 PHPTPSGSVLVGLGVFLLSSLLCTSACFFVANEYVHHATVVRVEKDPNYQELRAFDDEEEEGGSEGAWGGARRGP--GRGSSPIDSVYVRGGGIESDIWDPIPRITVIERSRFLIIFSKLIRAMLVLAVGWLVLVAVAVLLYTPQMPDVNVCNTALDWGSIFSGFEKLKLEADYQLLLSVYNPNRLDVAITSGQGVFKHDHEPIGQVEISPFVIK 215
            PHP PSGSVLVGLG+FLL+SL CTSACFFVANEYV HATVVR+EKDPNYQEL AFD+EE     EG  G +R GP  G G   +     +G G E D+WDP+PRI V ERSRFL++ S++IRA L+L + WLV+VAVAV LYTPQ+PDVNVCNTALDWGS+F+G E+LKLEADYQLLLSVYNPNRLDVAI+SGQGVFKHDHE IGQVE++PF+IK
Sbjct:  131 PHPAPSGSVLVGLGIFLLTSLFCTSACFFVANEYVKHATVVRMEKDPNYQELLAFDEEE-----EGLAGRSRSGPSKGGGEGVLGERRPQGSGGE-DVWDPVPRIRVEERSRFLVVCSQVIRAALILTLAWLVMVAVAVFLYTPQVPDVNVCNTALDWGSLFTGLERLKLEADYQLLLSVYNPNRLDVAISSGQGVFKHDHEAIGQVEVAPFLIK 339          
BLAST of NO15G02130 vs. NCBI_GenBank
Match: XP_002289058.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94494.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 87.0 bits (214), Expect = 8.200e-14
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 0
Query:  132 VLVAVAVLLYTPQMPDVNVCNTALDWGSIFSGFEKLKLEADYQLLLSVYNPNRLDVAITSGQGVFKHDHEPIGQV-----EISPFVIKELFYSCGYGDDEWS 229
            +++++  L Y P+ PD NVC   + W SI  G   LK+ A + LL+SVYNPNR +V + +G G F HD E +G       +ISP  I ++     +  D+WS
Sbjct:  132 IILSIVTLSYAPRQPDYNVCTDQMAWKSIVEGMTSLKMSASFDLLISVYNPNRWEVDLDNGSGQFHHDGEYVGSFQIPSGQISPQAISDIVVKVTFTPDKWS 233          
BLAST of NO15G02130 vs. NCBI_GenBank
Match: GAX24322.1 (hypothetical protein FisN_4Lh438 [Fistulifera solaris])

HSP 1 Score: 81.6 bits (200), Expect = 3.400e-12
Identity = 40/102 (39.22%), Postives = 59/102 (57.84%), Query Frame = 0
Query:  131 LVLVAVAVLLYTPQMPDVNVCNTALDWGSIFSGFEKLKLEADYQLLLSVYNPNRLDVAITSGQGVFKHDHEPIGQVEISPFVIK-----ELFYSCGYGDDEW 228
            +VL  VA ++Y P++P  NVCN AL W S+      LK+ AD+++L+SV NPNR DVA+  G+G F H+   +G  +I P   K     +LF       ++W
Sbjct:  321 VVLGLVATVMYYPRVPVYNVCNDALAWKSLMDSLTSLKVSADFEILMSVANPNRFDVALDMGKGSFAHNGVFVGTFDIPPITAKANSITDLFIITHLSPEKW 422          
BLAST of NO15G02130 vs. NCBI_GenBank
Match: XP_002179696.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48682.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 80.1 bits (196), Expect = 1.000e-11
Identity = 48/164 (29.27%), Postives = 81/164 (49.39%), Query Frame = 0
Query:   77 GRGSSPIDSVYVR-------GGGIESDIWDPIPRITVIERS-RFLIIFSKLIRAMLVLAVGWLVLVAVAVLLYTPQMPDVNVCNTALDWGSIFSGFEKLKLEADYQLLLSVYNPNRLDVAITSGQGVFKHDHEPIGQVEISPFVIK-----ELFYSCGYGDDEW 228
            G+ ++PI + YV+         G + ++    PR ++  R  R +     +   M +L    +V + VA + Y P+ P  N+CN ++ W S+      +K+ AD++LL S+ NPN  DVA+  G+G F HDH  +G  EI P   K     ++     +  D+W
Sbjct:  321 GQENNPIATGYVQLCDMFHTPAGQQPELVLAPPRHSIRSRQPRHMQRLYNMCVVMYILLTTLVVGLVVAAIRYYPKAPVYNICNDSVAWKSLIDSMASMKVSADFELLASISNPNHFDVALDMGKGSFTHDHAFVGTFEIPPVTAKAMSITDMMIIASFSPDKW 484          
BLAST of NO15G02130 vs. NCBI_GenBank
Match: GAX26059.1 (hypothetical protein FisN_4Hh438 [Fistulifera solaris])

HSP 1 Score: 78.2 bits (191), Expect = 3.800e-11
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 0
Query:  131 LVLVAVAVLLYTPQMPDVNVCNTALDWGSIFSGFEKLKLEADYQLLLSVYNPNRLDVAITSGQGVFKHDHEPIGQVEISPFVIK 215
            +VL  VA ++Y P++P  NVCN A+ W S+      LK+ AD+++L+SV NPNR DVA+  G+G F H+   +G  +I P   K
Sbjct:  321 VVLGLVATVMYYPRVPVYNVCNDAVAWKSLMDSLTSLKVSADFEILMSVANPNRFDVALDMGKGSFAHNGVFVGTFDIPPTTAK 404          
BLAST of NO15G02130 vs. NCBI_GenBank
Match: CBN75161.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.4 bits (176), Expect = 2.100e-9
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 0
Query:  133 LVAVAVLLYTPQMPDVNVCNTALDWGSIFSGFEKLKLEADYQLLLSVYNPNRLDVAITSGQGVFKHDHEPIGQVEISPFVI 214
            L+   V+ + P  P VNVCNT  DWGSI    +   +EAD+Q+L+S+YNPN L+  I +G  +  H    +G +   P ++
Sbjct:  277 LMCGVVIGFAPHAPGVNVCNTEFDWGSIVHSIKSAGVEADFQILVSIYNPNVLNAEIETGSALLYHGDTEVGVMAFEPALL 357          
BLAST of NO15G02130 vs. NCBI_GenBank
Match: GAX98915.1 (Hypothetical protein PINS_006773 [Pythium insidiosum])

HSP 1 Score: 65.1 bits (157), Expect = 3.300e-7
Identity = 29/78 (37.18%), Postives = 44/78 (56.41%), Query Frame = 0
Query:  128 VGWLVLVAVAVLLYTPQMPDVNVCNTALDWGSIFSGFEKLKLEADYQLLLSVYNPNRLDVAITSGQGVFKHDHEPIGQ 206
            +G  V++ V  L++ P+MPD NVCN   +W SIF     L  + +Y +L+SV N NR    + SG     H+ E +G+
Sbjct:  192 LGVFVVITVLALMFYPRMPDYNVCNRQFEWESIFQSIXHLSPKIEYNVLISVINXNRFGFVVESGHADIYHNTEWVGE 269          
BLAST of NO15G02130 vs. NCBI_GenBank
Match: ETI34609.1 (hypothetical protein F443_18901 [Phytophthora parasitica P1569] >ETK74951.1 hypothetical protein L915_18333 [Phytophthora parasitica] >ETL28374.1 hypothetical protein L916_18238 [Phytophthora parasitica] >ETL81636.1 hypothetical protein L917_18058 [Phytophthora parasitica] >ETM34833.1 hypothetical protein L914_18144 [Phytophthora parasitica] >ETO63404.1 hypothetical protein F444_18860 [Phytophthora parasitica P1976] >ETP04506.1 hypothetical protein F441_18714 [Phytophthora parasitica CJ01A1] >ETP32651.1 hypothetical protein F442_18684 [Phytophthora parasitica P10297])

HSP 1 Score: 63.5 bits (153), Expect = 9.700e-7
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 0
Query:  128 VGWLVLV---AVAVLLYTPQMPDVNVCNTALDWGSIFSGFEKLKLEADYQLLLSVYNPNRLDVAITSGQGVFKHDHEPIGQVEIS 210
            V WL +V    V  L++ P+MPD NVCN   +W SI      L+ + +YQ+L+SV N NR    + SG     H+   +G+ E+S
Sbjct:  199 VTWLTVVISMTVLALMFYPRMPDYNVCNREFEWESILHSIMGLEPKVEYQVLISVINENRFGFVLESGTADIYHNSTLVGKWELS 283          
BLAST of NO15G02130 vs. NCBI_GenBank
Match: ETI34610.1 (hypothetical protein, variant 1 [Phytophthora parasitica P1569] >ETK74952.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL28375.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL81637.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETM34834.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETO63405.1 hypothetical protein, variant 1 [Phytophthora parasitica P1976] >ETP04507.1 hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 63.5 bits (153), Expect = 9.700e-7
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 0
Query:  128 VGWLVLV---AVAVLLYTPQMPDVNVCNTALDWGSIFSGFEKLKLEADYQLLLSVYNPNRLDVAITSGQGVFKHDHEPIGQVEIS 210
            V WL +V    V  L++ P+MPD NVCN   +W SI      L+ + +YQ+L+SV N NR    + SG     H+   +G+ E+S
Sbjct:  199 VTWLTVVISMTVLALMFYPRMPDYNVCNREFEWESILHSIMGLEPKVEYQVLISVINENRFGFVLESGTADIYHNSTLVGKWELS 283          
The following BLAST results are available for this feature:
BLAST of NO15G02130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 15
Match NameE-valueIdentityDescription
XP_005854559.14.300e-7972.09hypothetical protein NGA_0240200 [Nannochloropsis ... [more]
EWM22365.14.300e-7972.09hypothetical protein Naga_100066g6 [Nannochloropsi... [more]
XP_002289058.18.200e-1438.24predicted protein [Thalassiosira pseudonana CCMP13... [more]
GAX24322.13.400e-1239.22hypothetical protein FisN_4Lh438 [Fistulifera sola... [more]
XP_002179696.11.000e-1129.27predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX26059.13.800e-1142.86hypothetical protein FisN_4Hh438 [Fistulifera sola... [more]
CBN75161.12.100e-938.27conserved unknown protein [Ectocarpus siliculosus][more]
GAX98915.13.300e-737.18Hypothetical protein PINS_006773 [Pythium insidios... [more]
ETI34609.19.700e-737.65hypothetical protein F443_18901 [Phytophthora para... [more]
ETI34610.19.700e-737.65hypothetical protein, variant 1 [Phytophthora para... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL147nonsL147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001383NSK001383Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02130.1NO15G02130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587822gene_4764Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100066g6gene8059Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02130.1NO15G02130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02130 ID=NO15G02130|Name=NO15G02130|organism=Nannochloropsis oceanica|type=gene|length=998bp
ATGCCCCATCCTACCCCTTCTGGCTCGGTGTTGGTGGGGTTAGGCGTCTT
CCTCCTATCCTCACTCCTTTGCACAAGTGCTTGTTTTTTTGTGGCAAATG
AGTACGTGCATCACGCTACGGTGGTCCGCGTGGAGAAAGATCCAAATTAC
CAGGAATTGCGGGCGTTTGATGACGAGGAGGAGGAGGGAGGGAGTGAAGG
AGCATGGGGCGGAGCTCGACGAGGGCCTGGAAGGGGCAGCAGCCCCATCG
ATAGCGTCTATGTACGAGGAGGAGGCATCGAGAGCGATATATGGGACCCT
ATCCCGAGAATAACAGTGATTGAACGCTCTCGGTTTTTGATAATATTTTC
AAAGCTCATTCGAGCCATGCTTGTTCTGGCCGTGGGGTGGCTAGTGCTGG
TGGCAGTGGCTGTGTTGCTGTATACTCCACAGATGCCCGATGTGAATGTG
TGTAATACGGCCTTGGATTGGGGCTCGATCTTCTCGGGCTTCGAAAAGTT
GAAACTGGAGGCCGACTATCAATTATTGCTGTCCGTgtaagtattttttt
tattgattattcaactaactaacgaattaacaaattgattgccctagttg
atcattagttcattcatgtctgaactgattgttcctctattcctctctct
cgccctcagTTACAACCCTAACAGGCTCGACGTCGCCATCACTTCAGGGC
AAGGCGTCTTTAAGCACGACCATGAGCCAATCGGGCAAGTCGAAATCTCC
CCCTTTGTAATCAAAGgtggggcaatcactgatgttcttgtcactttagt
cttcaccccttccgtgtggaaaagcctccaattagacttggcctttcaaa
caggctcgttaatggttatggtggatgtaaatgttgccggtagagtgata
tggaagaagagaaggttgtttccattcgcctacaatctacagAACTATTT
TATTCATGTGGGTACGGAGACGACGAGTGGTCCCAGACATTTGTGTAA
back to top

protein sequence of NO15G02130.1

>NO15G02130.1-protein ID=NO15G02130.1-protein|Name=NO15G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MPHPTPSGSVLVGLGVFLLSSLLCTSACFFVANEYVHHATVVRVEKDPNY
QELRAFDDEEEEGGSEGAWGGARRGPGRGSSPIDSVYVRGGGIESDIWDP
IPRITVIERSRFLIIFSKLIRAMLVLAVGWLVLVAVAVLLYTPQMPDVNV
CNTALDWGSIFSGFEKLKLEADYQLLLSVYNPNRLDVAITSGQGVFKHDH
EPIGQVEISPFVIKELFYSCGYGDDEWSQTFV*
back to top
Synonyms
Publications