NO15G02070, NO15G02070 (gene) Nannochloropsis oceanica

Overview
NameNO15G02070
Unique NameNO15G02070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length336
Alignment locationchr15:587005..587340 -

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Properties
Property NameValue
DescriptionMitochondrial-processing peptidase subunit alpha
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:587005..587340 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003824catalytic activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR011249Metalloenz_LuxS/M16
Homology
BLAST of NO15G02070 vs. NCBI_GenBank
Match: XP_005854553.1 (hypothetical protein NGA_0239600 [Nannochloropsis gaditana CCMP526] >EKU21800.1 hypothetical protein NGA_0239600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 211.5 bits (537), Expect = 1.400e-51
Identity = 102/111 (91.89%), Postives = 107/111 (96.40%), Query Frame = 0
Query:    1 MHEFCAQICKLALTPVDPVELSRARNMLKCNVLTQLESRIILFEDLGRQFVTYGHREAPEALCRKIDEVKAEDVMNIARRAISKPVSISAVGKDLKNVPIYDQVLQWFAQS 112
            MHEFCAQICKLALTPVDPVELSRARNMLKCNVLTQLESRIILFED+GRQ +TYGHREAPEALCRKIDEVKAED+M IARRAISKPVSISAVGKDL+ VP Y+QVLQWFAQS
Sbjct:  223 MHEFCAQICKLALTPVDPVELSRARNMLKCNVLTQLESRIILFEDIGRQMITYGHREAPEALCRKIDEVKAEDLMKIARRAISKPVSISAVGKDLRTVPNYEQVLQWFAQS 333          
BLAST of NO15G02070 vs. NCBI_GenBank
Match: EWM22439.1 (Peptidase M16 [Nannochloropsis gaditana])

HSP 1 Score: 211.5 bits (537), Expect = 1.400e-51
Identity = 102/111 (91.89%), Postives = 107/111 (96.40%), Query Frame = 0
Query:    1 MHEFCAQICKLALTPVDPVELSRARNMLKCNVLTQLESRIILFEDLGRQFVTYGHREAPEALCRKIDEVKAEDVMNIARRAISKPVSISAVGKDLKNVPIYDQVLQWFAQS 112
            MHEFCAQICKLALTPVDPVELSRARNMLKCNVLTQLESRIILFED+GRQ +TYGHREAPEALCRKIDEVKAED+M IARRAISKPVSISAVGKDL+ VP Y+QVLQWFAQS
Sbjct:  425 MHEFCAQICKLALTPVDPVELSRARNMLKCNVLTQLESRIILFEDIGRQMITYGHREAPEALCRKIDEVKAEDLMKIARRAISKPVSISAVGKDLRTVPNYEQVLQWFAQS 535          
BLAST of NO15G02070 vs. NCBI_GenBank
Match: EWM22363.1 (Peptidase M16 [Nannochloropsis gaditana])

HSP 1 Score: 209.9 bits (533), Expect = 4.000e-51
Identity = 101/111 (90.99%), Postives = 107/111 (96.40%), Query Frame = 0
Query:    1 MHEFCAQICKLALTPVDPVELSRARNMLKCNVLTQLESRIILFEDLGRQFVTYGHREAPEALCRKIDEVKAEDVMNIARRAISKPVSISAVGKDLKNVPIYDQVLQWFAQS 112
            MHEFCAQICKLALTPVDPVELSRARNMLKCNVLTQL+SRIILFED+GRQ +TYGHREAPEALCRKIDEVKAED+M IARRAISKPVSISAVGKDL+ VP Y+QVLQWFAQS
Sbjct:  240 MHEFCAQICKLALTPVDPVELSRARNMLKCNVLTQLKSRIILFEDIGRQMITYGHREAPEALCRKIDEVKAEDLMKIARRAISKPVSISAVGKDLRTVPNYEQVLQWFAQS 350          
BLAST of NO15G02070 vs. NCBI_GenBank
Match: GAX23778.1 (mitochondrial-processing peptidase subunit alpha [Fistulifera solaris])

HSP 1 Score: 118.2 bits (295), Expect = 1.600e-23
Identity = 54/104 (51.92%), Postives = 74/104 (71.15%), Query Frame = 0
Query:    4 FCAQICKLALTPVDPVELSRARNMLKCNVLTQLESRIILFEDLGRQFVTYGHREAPEALCRKIDEVKAEDVMNIARRAISKPVSISAVGKDLKNVPIYDQVLQW 108
            F   + +LA+  V   EL RARNMLKCNVLTQLESR++LFED+GRQ +TYG RE     C+KID V  ED+  +A +A+ KP  +++VG DL +VP +D+++ W
Sbjct:  452 FTHHLAQLAVNHVSDEELDRARNMLKCNVLTQLESRLVLFEDMGRQVLTYGQRENMNVTCKKIDAVTKEDLRQVASKALEKPPCLASVGSDLSHVPRHDELVAW 555          
BLAST of NO15G02070 vs. NCBI_GenBank
Match: XP_002289075.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94511.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 117.9 bits (294), Expect = 2.100e-23
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 0
Query:   10 KLALTPVDPVELSRARNMLKCNVLTQLESRIILFEDLGRQFVTYGHREAPEALCRKIDEVKAEDVMNIARRAISKPVSISAVGKDLKNVPIYDQVLQWFAQ 111
            KLA   V   EL RARNMLKCNVLTQLESR++LFED+GRQ +TYG RE    +C KID V  ED+  + ++A+ KP ++S VG D+  VP  ++V QW AQ
Sbjct:  462 KLADQLVTDEELDRARNMLKCNVLTQLESRLVLFEDIGRQILTYGKREDAATMCAKIDAVSKEDIREVVQKALLKPPTLSTVGLDISKVPKVEEVTQWLAQ 562          
BLAST of NO15G02070 vs. NCBI_GenBank
Match: OEU16163.1 (LuxS/MPP-like metallohydrolase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 115.9 bits (289), Expect = 7.900e-23
Identity = 57/103 (55.34%), Postives = 72/103 (69.90%), Query Frame = 0
Query:    7 QICKLALTPVDPVELSRARNMLKCNVLTQLESRIILFEDLGRQFVTYGHREAPEALCRKIDEVKAEDVMNIARRAI-SKPVSISAVGKDLKNVPIYDQVLQWF 109
            Q+  +A+ PV  +ELSRARNMLKCNVLTQLESR+ILFED+GRQ +TYG RE     CRKID V A D+  +AR  + +   ++ A G  L  VP YD+V +WF
Sbjct:  338 QLACVAIQPVGDIELSRARNMLKCNVLTQLESRLILFEDMGRQVLTYGKREDAATTCRKIDSVTAGDIQKLAREMLQNHQPTLVATGSHLDKVPTYDEVSRWF 440          
BLAST of NO15G02070 vs. NCBI_GenBank
Match: EJK70440.1 (hypothetical protein THAOC_08203 [Thalassiosira oceanica])

HSP 1 Score: 109.0 bits (271), Expect = 9.700e-21
Identity = 52/87 (59.77%), Postives = 63/87 (72.41%), Query Frame = 0
Query:   20 ELSRARNMLKCNVLTQLESRIILFEDLGRQFVTYGHREAPEALCRKIDEVKAEDVMNIARRAISKPVSISAVGKDLKNVPIYDQVLQ 107
            ELSRARNMLKCNVLTQLESR++LFED+ RQ  TYG  E    +C KID V  ED+  I R ++ KPV++SAVG+D+  VP  D V Q
Sbjct:  455 ELSRARNMLKCNVLTQLESRLVLFEDVARQISTYGKVEDAATMCEKIDAVTKEDIQRIVRESLKKPVTMSAVGRDISRVPRVDDVSQ 541          
BLAST of NO15G02070 vs. NCBI_GenBank
Match: XP_002183564.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC44746.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 107.1 bits (266), Expect = 3.700e-20
Identity = 51/101 (50.50%), Postives = 72/101 (71.29%), Query Frame = 0
Query:    8 ICKLALTPVDPVELSRARNMLKCNVLTQLESRIILFEDLGRQFVTYGHREAPEALCRKIDEVKAEDVMNIARRAISKPVSISAVGKDLKNVPIYDQVLQWF 109
            + +LA TPV   ELSRAR MLK NVLTQLESR++LFED+GRQ +TY  R+    +C KID V A+D++ IA+ ++  P ++++VG +L  VP   +V +WF
Sbjct:  340 VLRLASTPVTDEELSRARKMLKNNVLTQLESRLVLFEDMGRQILTYNSRQDMHQVCAKIDAVTADDLVRIAQNSLRHPPTLASVGSNLAYVPQQSEVSEWF 440          
BLAST of NO15G02070 vs. NCBI_GenBank
Match: CCA25279.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 106.7 bits (265), Expect = 4.800e-20
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 0
Query:    5 CAQICKLALTPVDPVELSRARNMLKCNVLTQLESRIILFEDLGRQFVTYGHREAPEALCRKIDEVKAEDVMNIARRAISKPVSISAVGKDLKNVPIYDQV 105
            C Q+  +A   VDP+ELSRA+N LK +VL  LESR+IL+ED+GRQ +TYG+RE+P+ +C KID+V AED+  + R A+ +  S+   G DLK  P YDQV
Sbjct:  508 CNQLLHIAQVVVDPLELSRAKNQLKSSVLMNLESRMILYEDIGRQLLTYGYRESPQRVCAKIDKVTAEDLQRVMREAMRERPSMVYYG-DLKLFPTYDQV 606          
BLAST of NO15G02070 vs. NCBI_GenBank
Match: CCI40388.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 105.5 bits (262), Expect = 1.100e-19
Identity = 51/100 (51.00%), Postives = 73/100 (73.00%), Query Frame = 0
Query:    5 CAQICKLALTPVDPVELSRARNMLKCNVLTQLESRIILFEDLGRQFVTYGHREAPEALCRKIDEVKAEDVMNIARRAISKPVSISAVGKDLKNVPIYDQV 105
            C Q+  +A   VDP+ELSRA+N LK +VL  LESR+IL+ED+GRQ +TYG+RE+P+++C KID+V  +D+  + R A+++  S+   G DLK  P YDQV
Sbjct:  438 CNQLLHVAQIAVDPLELSRAKNQLKSSVLMNLESRMILYEDIGRQLLTYGYRESPQSVCAKIDKVTTDDIQRVMRTAMTERPSMVYYG-DLKLFPAYDQV 536          
The following BLAST results are available for this feature:
BLAST of NO15G02070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854553.11.400e-5191.89hypothetical protein NGA_0239600 [Nannochloropsis ... [more]
EWM22439.11.400e-5191.89Peptidase M16 [Nannochloropsis gaditana][more]
EWM22363.14.000e-5190.99Peptidase M16 [Nannochloropsis gaditana][more]
GAX23778.11.600e-2351.92mitochondrial-processing peptidase subunit alpha [... [more]
XP_002289075.12.100e-2355.45predicted protein [Thalassiosira pseudonana CCMP13... [more]
OEU16163.17.900e-2355.34LuxS/MPP-like metallohydrolase [Fragilariopsis cyl... [more]
EJK70440.19.700e-2159.77hypothetical protein THAOC_08203 [Thalassiosira oc... [more]
XP_002183564.13.700e-2050.50predicted protein, partial [Phaeodactylum tricornu... [more]
CCA25279.14.800e-2053.00conserved hypothetical protein [Albugo laibachii N... [more]
CCI40388.11.100e-1951.00unnamed protein product [Albugo candida][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL142nonsL142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001428NSK001428Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02070.1NO15G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587801gene_4759Nannochloropsis oceanica (N. oceanica CCMP1779)gene
MPPgene8054Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02070.1NO15G02070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02070 ID=NO15G02070|Name=NO15G02070|organism=Nannochloropsis oceanica|type=gene|length=336bp
ATGCATGAGTTTTGTGCGCAGATTTGCAAGCTGGCCTTGACGCCTGTGGA
TCCTGTGGAGTTATCAAGGGCGCGAAATATGTTAAAGTGCAATGTCTTGA
CGCAATTGGAGTCTAGGATCATTTTATTTGAGGATTTGGGGAGGCAATTC
GTGACCTATGGCCATCGGGAGGCGCCTGAGGCATTGTGTCGAAAGATTGA
TGAGGTCAAGGCAGAGGACGTGATGAACATTGCCCGACGGGCTATTTCTA
AGCCAGTGTCGATTTCGGCTGTGGGTAAGGACTTAAAGAATGTGCCAATT
TATGATCAGGTCTTACAATGGTTTGCACAATCATAG
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protein sequence of NO15G02070.1

>NO15G02070.1-protein ID=NO15G02070.1-protein|Name=NO15G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MHEFCAQICKLALTPVDPVELSRARNMLKCNVLTQLESRIILFEDLGRQF
VTYGHREAPEALCRKIDEVKAEDVMNIARRAISKPVSISAVGKDLKNVPI
YDQVLQWFAQS*
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Synonyms
Publications