NO15G01980, NO15G01980 (gene) Nannochloropsis oceanica

Overview
NameNO15G01980
Unique NameNO15G01980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1707
Alignment locationchr15:554663..556369 +

Link to JBrowse

Properties
Property NameValue
DescriptionWd-40 repeat containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:554663..556369 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
IPR011047Quinonprotein_ADH-like_supfam
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
Homology
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BLAST of NO15G01980 vs. NCBI_GenBank
Match: EWM22403.1 (wd-40 repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 372.1 bits (954), Expect = 3.100e-99
Identity = 229/566 (40.46%), Postives = 303/566 (53.53%), Query Frame = 0 
Query:   17 TDPFAPLSQDVSGLLYKFLSVRDLVSLSTVSHFLYENVAHQQHWFDLCARRWPSLRAS-LEASSSSPQSGNTAL-------------THAPFFPSTRAYINAGDVINKTCFRSTFLQHAEAEMNWRRTRPVHVTQERLVFRHTDTGGIQSEPVTSITLSKTGGRELMSIAMGRHVGVFRADASGEISVHEGPQLLIDVLNKGRTNTKNRIINSTKISS---SKLVATGNDHSLRMIDLATGSQHTFMEQHTDSVWGLSLDRGSSTNWDEDVLGVYTTSDNXXXXXXXXXXXXXXXXXXXXXXXXXXXYGLIAIFDADRGWKPAIRFQGHSSSWIRTLHLDINRHLLISGSADSTCKAWDLRRAGEVLMRYVHPNHFEEIRGVECVGNRLFTGCYDGMVREYELDSGCLKGVVANHGVYAVECLSLSRDTGRMVSVDWDGVLAVRKGRPLIDLEPEAAKEDTSVLCFGERFEEGWMEETGLGSSLSSFVSEGCGNNSYLRPDYGCEALRGPGRRITCDVLGPALDRKEDLESSLNAKVICMQHNQERLVMGTKSGDVISLLFRKGLS 566
            T  F  L Q +SG LY FL VRDL+S S  S  +   V   Q+WF LCARRWP+L  S    S+ SP  G+                 +    PS+RAY NA   + + CFRS FLQHAEAE+NWRR RP  V QERL         + S PV ++ L + G RE+M  A   HVG +R   SG + + +GP+LL+      R  + N +I +  ++S   +KL+  GND  + ++D   G +   +  H  SVW L +D  S  +  E                                      Y  +A+ D DR  + AI F GH  SWIR +HLD+ RHLLI+GSAD+TCKAWDLRR G VL ++VHPNHFEE+R +EC G RL TGCYDG+VREY+L +G     +A H  YAVE + LSR+TGR+VSVDWDG +A  +G   +     A   DT  L      + G M++     S  +F     G+N ++RP Y     +  G+ I CD+   AL   ED  S     V CMQH++ERLV+GT  G+V+SLLFRK L+
Sbjct:   27 THSFLRLDQHLSGHLYAFLLVRDLLSFSNTSKDVLLYVLTSQYWFTLCARRWPALLLSPASVSAFSPAYGSRLYPLKRSVVRNEPTEEYVSCLPSSRAYKNA---MERNCFRSIFLQHAEAELNWRRGRPTTVIQERLEMPKE----VSSSPVKALALVRVGTREVMLAAKRYHVGAYRVGDSGHLPLSKGPELLL------RAKSGNSMIYTMVVASGDPAKLLVAGNDTGVEVLDWTVGRKLASLHHHASSVWCLGVDTDSHPDAAE-----------------------ACGQAGGTLMVASGGYCSLALSDVDRQAEAAIAFHGH-QSWIRGVHLDMGRHLLITGSADATCKAWDLRRPGRVLTKFVHPNHFEEVRCLECAGPRLVTGCYDGVVREYDLGTGRYVSTLAKH-EYAVETMQLSRETGRLVSVDWDGQVAYNRGMAYLSRTFGAQSVDTLALV----HDVGEMQDI----SRDAFGRASGGSNHFVRPRY---EDKHHGKIIGCDLQASALFHSEDGISHTRTSVACMQHDEERLVLGTTGGNVVSLLFRKSLN 543
The following BLAST results are available for this feature:
BLAST of NO15G01980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22403.13.100e-9940.46wd-40 repeat containing protein [Nannochloropsis g... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL142nonsL142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001412NSK001412Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01980.1NO15G01980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587750gene_4748Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100067g21gene8042Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01980.1NO15G01980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01980 ID=NO15G01980|Name=NO15G01980|organism=Nannochloropsis oceanica|type=gene|length=1707bp
ATGCAGGTGACAGACGCCCAAGAACATGTTACCCCGATCCCGAGCCCCAC
CGATCCCTTCGCACCACTCAGCCAAGACGTGAGTGGTCTCCTATATAAAT
TCCTCTCCGTGCGGGATTTGGTATCCTTGAGCACTGTTTCCCACTTTCTG
TACGAGAACGTCGCGCATCAGCAGCACTGGTTCGATTTGTGCGCGCGGCG
GTGGCCTAGCTTGCGTGCATCCCTGGAAGCATCCTCATCGTCGCCCCAAT
CAGGCAATACAGCGCTGACCCATGCACCTTTCTTTCCTTCTACACGAGCA
TACATTAATGCGGGCGATGTCATAAACAAGACGTGCTTCCGCTCTACTTT
TCTGCAGCACGCGGAAGCTGAGATGAACTGGCGGCGGACGCGGCCCGTCC
ATGTCACACAAGAGCGGCTCGTCTTCCGGCACACAGACACAGGGGGAATA
CAATCGGAACCTGTGACATCAATCACTTTATCGAAAACCGGAGGCCGCGA
GCTAATGTCCATTGCGATGGGGCGTCACGTCGGTGTTTTCAGAGCAGATG
CCTCTGGAGAAATTTCAGTGCATGAAGGCCCGCAGCTCTTGATAGACGTG
CTGAACAAGGGACGTACGAATACCAAAAATCGTATAATCAACAGCACGAA
GATCTCGTCATCCAAGCTTGTGGCCACTGGGAACGACCATTCCCTCAGGA
TGATCGACTTGGCGACAGGTTCCCAGCATACATTTATGGAGCAGCACACT
GATAGTGTCTGGGGGCTAAGTCTCGACAGAGGTAGTAGCACCAATTGGGA
CGAGGATGTACTCGGGGTCTACACCACTAGCGACAATGCCATCGACAACA
ACAACAGCAGCAGCGGCAGCAGCAGTGTCGGCGGTGATGGAGGAAATTTA
ATGGTTGCCTCCTCGTCTTATGGCTTGATTGCAATTTTCGATGCCGACCG
TGGCTGGAAGCCAGCGATTAGATTTCAGGGGCATTCGTCATCGTGGATAA
GAACATTACATTTAGACATAAATAGACATCTATTGATTAGTGGATCGGCA
GATTCGACGTGCAAGGCCTGGGATCTGCGACGAGCAGGAGAGGTGCTTAT
GAGGTATGTGCACCCGAATCATTTTGAAGAGATTAGAGGCGTGGAGTGCG
TGGGAAATCGCTTGTTTACTGGATGTTATGATGGGATGGTGAGAGAGTAT
GAGTTGGATTCGGGGTGCTTAAAGGGGGTGGTGGCGAATCATGGTGTGTA
TGCTGTAGAATGCTTGTCGCTGTCCCGGGATACGGGGAGGATGGTAAGTG
TTGATTGGGATGGGGTTCTGGCGGTGCGGAAAGGCCGACCGTTGATTGAT
TTAGAGCCGGAGGCTGCGAAGGAGGATACAAGCGTGCTTTGCTTTGGAGA
GCGATTTGAAGAGGGGTGGATGGAAGAGACTGGGCTTGGCTCTAGCTTAA
GCAGTTTTGTTTCTGAAGGATGTGGAAATAATTCGTATTTACGGCCGGAT
TACGGTTGCGAGGCATTGAGAGGTCCAGGTAGGAGGATTACGTGTGATGT
GCTCGGGCCTGCATTAGACCGTAAGGAGGACCTGGAGTCGTCTTTGAATG
CCAAGGTGATTTGTATGCAACATAACCAGGAGAGGTTGGTGATGGGGACT
AAAAGTGGGGATGTAATTTCCCTTTTGTTTAGAAAGGGATTATCTGGTGA
GGTGTGA
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protein sequence of NO15G01980.1

>NO15G01980.1-protein ID=NO15G01980.1-protein|Name=NO15G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=569bp
MQVTDAQEHVTPIPSPTDPFAPLSQDVSGLLYKFLSVRDLVSLSTVSHFL
YENVAHQQHWFDLCARRWPSLRASLEASSSSPQSGNTALTHAPFFPSTRA
YINAGDVINKTCFRSTFLQHAEAEMNWRRTRPVHVTQERLVFRHTDTGGI
QSEPVTSITLSKTGGRELMSIAMGRHVGVFRADASGEISVHEGPQLLIDV
LNKGRTNTKNRIINSTKISSSKLVATGNDHSLRMIDLATGSQHTFMEQHT
DSVWGLSLDRGSSTNWDEDVLGVYTTSDNAIDNNNSSSGSSSVGGDGGNL
MVASSSYGLIAIFDADRGWKPAIRFQGHSSSWIRTLHLDINRHLLISGSA
DSTCKAWDLRRAGEVLMRYVHPNHFEEIRGVECVGNRLFTGCYDGMVREY
ELDSGCLKGVVANHGVYAVECLSLSRDTGRMVSVDWDGVLAVRKGRPLID
LEPEAAKEDTSVLCFGERFEEGWMEETGLGSSLSSFVSEGCGNNSYLRPD
YGCEALRGPGRRITCDVLGPALDRKEDLESSLNAKVICMQHNQERLVMGT
KSGDVISLLFRKGLSGEV*
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Synonyms
Publications