NO15G01850, NO15G01850 (gene) Nannochloropsis oceanica

Overview
NameNO15G01850
Unique NameNO15G01850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1210
Alignment locationchr15:524128..525337 -

Link to JBrowse

Properties
Property NameValue
DescriptionUDENN
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:524128..525337 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G01850 vs. NCBI_GenBank
Match: EWM22387.1 (uDENN [Nannochloropsis gaditana])

HSP 1 Score: 371.7 bits (953), Expect = 2.700e-99
Identity = 185/285 (64.91%), Postives = 220/285 (77.19%), Query Frame = 0 
Query:   86 FSYTKFPIFLDKEWMAMPSSSLPPILHEVMTRRDIFLKKGNRMILARSVSECMKDWQVVSKPIGGTGDKEIYLALQIFGIYFMCLPSRVSYKGRPLKIIMQAIGVLQFLLDFQLERYMDEAMWRSLLVACGRCGHSSTRKIAIAIFGIMRRSGLTINVLTYGQYTKALAEKDATKFTATAASTVMGREAVAE----VDGSASEASSALSKDRVEIDDSPWLEERGQAWYMATCEPSTSETLKSWTVAKGFRNLLACSTMATADSKKPGDRPVLQNGHAWTGGLRD 367
            FSY +FP  L+K WM +P SSLPPIL E+++RR   LKKG RMILARSVSEC+KDW  V   IGG  DKEIYLA+QIFGIYFMCLPSRVSYKG+PL++IMQA+G+LQ++L F+LE YMDEAMWRSLL+ACGRCG +STRKIAIAIFGIMRR+GL+IN LTYGQYTKALAEKDA +F AT     +      E    V    +E  + + + R  IDDSPWLEERG+ WY+A CEPS  ETLK+W+VA GF++LLA  TM    S+K  +RPVLQ+G AWT GLRD
Sbjct:  967 FSYKQFPNTLNKTWMDLPPSSLPPILLEIISRRKKSLKKGKRMILARSVSECVKDWHTVGTQIGGARDKEIYLAMQIFGIYFMCLPSRVSYKGKPLRVIMQAMGILQYILGFELEGYMDEAMWRSLLIACGRCGQASTRKIAIAIFGIMRRAGLSINALTYGQYTKALAEKDAAEFVATTTGLTLVTSGCGERGRQVPDCRTEMGTVVDETRGGIDDSPWLEERGRGWYLAACEPSAPETLKNWSVADGFKSLLA-GTMKAVVSRKARERPVLQDGDAWTSGLRD 1250
The following BLAST results are available for this feature:
BLAST of NO15G01850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22387.12.700e-9964.91uDENN [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL142nonsL142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001400NSK001400Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01850.1NO15G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01850.1NO15G01850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01850 ID=NO15G01850|Name=NO15G01850|organism=Nannochloropsis oceanica|type=gene|length=1210bp
ATGGCCCGGCGCGAAAAACTTCAGATGCAACAACAGCAGCGAATAGAGCA
CGCACAGCTACAACACCACGAGGCTTTGATGATGTCCAGCCTCATCGCCG
ACCGGCACTACCGCTATCAACAgtccgtcacggaggcatcaccagtcttc
gacgggcttctttgccgatacgcttcccagtttcatcactgttcccggtc
ccagTGCGGAAGAATGTATGCCCGGTCCCAGTGCGGAAGAATGTATGGGG
TTGAGCAAAGCTGATGCATGTCCTGGGACTTCTGGGGCTGTAAGCAACCA
GTTGAGCGTGGTAACACTGCCATCGCAACCGCAATGCTTCTCGTACACGA
AATTTCCAATCTTTCTGGACAAGGAGTGGATGGCCATGCCGTCCTCTTCC
TTGCCACCGATTTTACATGAGGTAATGACGCGCCGCGACATTTTTTTGAA
AAAGGGAAACCGCATGATTCTGGCGCGCTCAGTTTCCGAATGCATGAAGG
ACTGGCAGGTAGTGAGCAAACCGATCGGCGGAACCGGCGACAAGGAGATT
TACCTGGCATTGCAGATTTTCGGCATCTACTTCATGTGTTTGCCCTCGAG
GGTCTCGTACAAGGGCCGACCGCTTAAGATTATCATGCAGGCTATTGGTG
TCTTGCAGTTTCTCTTGGACTTTCAGCTCGAGCGCTACATGGACGAAGCT
ATGTGGCGCTCCCTCTTGGTAGCTTGCGGGCGGTGCGGGCACTCGTCCAC
GCGCAAGATTGCCATTGCCATCTTTGGGATCATGCGGCGCTCGGGACTAA
CTATCAACGTCTTAACGTACGGGCAGTACACTAAAGCCTTGGCAGAGAAG
GATGCCACCAAGTTCACGGCGACGGCGGCATCGACAGTGATGGGTAGGGA
AGCAGTAGCGGAAGTTGATGGAAGCGCATCAGAGGCGAGCAGCGCTTTGA
GCAAGGATCGGGTAGAGATCGACGACAGCCCCTGGCTGGAGGAGCGCGGT
CAGGCTTGGTACATGGCGACATGCGAGCCTTCAACATCAGAGACGCTAAA
GAGCTGGACGGTCGCGAAAGGTTTCAGAAATCTACTTGCGTGCTCTACCA
TGGCGACTGCGGATTCGAAGAAGCCCGGGGATCGTCCAGTGTTGCAAAAT
GGACACGCCTGGACTGGCGGGTTGCGGGATCTAAGCTCTCTGCGCACAAT
ACGACCGTAA
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protein sequence of NO15G01850.1

>NO15G01850.1-protein ID=NO15G01850.1-protein|Name=NO15G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MARREKLQMQQQQRIEHAQLQHHEALMMSSLIADRHYRYQHAEECMPGPS
AEECMGLSKADACPGTSGAVSNQLSVVTLPSQPQCFSYTKFPIFLDKEWM
AMPSSSLPPILHEVMTRRDIFLKKGNRMILARSVSECMKDWQVVSKPIGG
TGDKEIYLALQIFGIYFMCLPSRVSYKGRPLKIIMQAIGVLQFLLDFQLE
RYMDEAMWRSLLVACGRCGHSSTRKIAIAIFGIMRRSGLTINVLTYGQYT
KALAEKDATKFTATAASTVMGREAVAEVDGSASEASSALSKDRVEIDDSP
WLEERGQAWYMATCEPSTSETLKSWTVAKGFRNLLACSTMATADSKKPGD
RPVLQNGHAWTGGLRDLSSLRTIRP*
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Synonyms
Publications