NO15G01800, NO15G01800 (gene) Nannochloropsis oceanica

Overview
NameNO15G01800
Unique NameNO15G01800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2294
Alignment locationchr15:513646..515939 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:513646..515939 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G01800 vs. NCBI_GenBank
Match: EWM22388.1 (hypothetical protein Naga_100067g5 [Nannochloropsis gaditana])

HSP 1 Score: 226.5 bits (576), Expect = 1.000e-55
Identity = 159/294 (54.08%), Postives = 180/294 (61.22%), Query Frame = 0 
Query:   17 LLLHVAALAFLGVGA---NAFHLTPRISATADTTSFLITRAMRLPGLSSPRKSIKTLMWIFPPFLRNLGMGGTRLRRSSGSRXXXXXXXXXG---------KPRLNASPLSYDSGPTFLHR----------------TESSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVVPILIKYTGGVGYKSLYTGVCRVLKERFGNITIRKTILGVTEIRGGKKLGVFEVVVGDRSFTSKPGAPGVYLPMADIQAAIERLVXXXXXXXXXXXXXXXXXXXXXSEGNDGVAYQESIHP 283
            LLL +    F G G+    AF+LTPR+S  AD TS +I RAMRL    + RKS + L W+FP FLR +   G R   SS SR  XXXXX  G           RL A+ LSY  GP+FL R                ++ S                              DV+PILIKYTGGVGYKSLYTGVCRVLKERFGNI IRKTILGVTE+RGGKKLG+FEVV+GDRSFTSKPGA GVYLPMAD+QAAIER+V       XXXXXXXXXXXXXX    DG++YQESIHP
Sbjct:    8 LLLFLCVATFSGPGSVEVGAFYLTPRVSTGADITSPVIVRAMRLQNFGTYRKSARVLSWVFPQFLRQIMFRGAR-HGSSTSRSSXXXXXTSGTNDAGPAPRTGRLAATALSYQVGPSFLQRMSAVSYNGVEGEGGRPSQQSVQQPQPQSAQQNVRPALNGEGGLAGAQENSDVIPILIKYTGGVGYKSLYTGVCRVLKERFGNIAIRKTILGVTEVRGGKKLGIFEVVIGDRSFTSKPGAVGVYLPMADLQAAIERVVVRREKENXXXXXXXXXXXXXXXXXXDGISYQESIHP 300
The following BLAST results are available for this feature:
BLAST of NO15G01800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22388.11.000e-5554.08hypothetical protein Naga_100067g5 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL142nonsL142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001395NSK001395Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01800.1NO15G01800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670500gene_4731Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100067g5gene8028Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01800.1NO15G01800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01800 ID=NO15G01800|Name=NO15G01800|organism=Nannochloropsis oceanica|type=gene|length=2294bp
TGCGTAGAAAAGGACAGAGGACATCAAGCAAGGCGGAGAGTTCCGACCCG
CGGCCCACGGTGGCATTGGCGCCATGACACCTGACCGTATTAAAACAACA
GATGCGAAAAGCCGGCCGGAGGAGCACTTCTTCGACCACGCCAGTGTGGA
TTGCGGCCAGGGCAAATAAGCACAGGCACCCATCTTCAACCCTACTTTAT
CCTTCATGCTTGTTTGGTGGTTCTTGGCCTAGGCTGTTGCCCGTGGACAG
GGTGGACATGACAGAAAAAGTGCCCCGTCATGGCTGTGGCGCATTCGATT
TCGCTGCTTGCATTATCACGCACGCACCCACACGTTTAACCACATTGACA
CAGGCACGCGCGCGCCGGCGGCGTTGGCAATCAGTAGCAGCACGGTGAGG
GCACCGCCAAGATGACCACGAGGCCGCAGCTAATCTCACGGGGGGGGAAC
CTTGCCTTTTTGCTTCTTCACGTCGCGGCCTTGGCCTTCCTCGGCGTGGG
CGCGAACGCATTCCACCTGgtacgtacacacaagcacacactacgattat
gtccagggttaactttaggccgtgaaataaaggagggtgtctactgagtg
tgctttctcccatgctgtgctcacgttgtggcacgctaaaaaacccgatt
atctctcacactctctcattgtccaaaatcgtcatatgacagACTCCGCG
CATCTCGGCCACAGCAGACACCACCTCCTTCCTCATCACGCGCGCCATGC
GACTACCCGGGCTATCCTCGCCACGAAAATCTATCAAGACCCTCATGTGG
ATATTTCCTCCTTTCCTCCGCAACTTAGGCATGGGTGGCACCCGCCTACG
TCGCAGCAGCGGCAGCAGGAGCAGCAGGAGCAGCAGCGGCAGCAATGGGA
AACCAAGACTGAACGCTAGCCCCCTTTCCTACGACTCTGGCCCCACCTTT
CTCCACCGAACCGAATCCTCCTCCCCTGAATCCGAGCAGCAAGCCTCCCC
ACCGCAATCATCAACAAGTGAAGGCAGCAGCAGCTCATATTCTTACGGAG
AAGGGAATGGAGATGTCGTCCCTATCCTGATCAAATACACGGGCGGAGTT
GGGTATAAAAGCCTCTATACGGGCGTCTGCCGCGTGCTGAAGGAGCGATT
TGGGAATATCACCATTCGCAAGACCATCCTGGGCGTCACCGAAATTAGGG
GTGGGAAGAAGCTGGGAGTTTTTGAAGTGGTAGTGGGGGATCGCTCATTC
ACCTCGAAGCCGGGGGCGCCTGGTGTGTATTTACCCATGGCAGATATCCA
GGCCGCCATTGAAAGGTTGGTTGTGAGGAGGGAGAAGGAGAATAGGATAC
TGGCGGCGGCTGCTGCTGCCGCGGCGGCGCTGGTGAGCGAGGGGAATGAT
GGGGTGGCGTACCAGGAGTCGATTCATCCTTGAGAATTTGGACGGTGTTT
GAGCTGGGATAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATG
TGTGTGTGTATGTGTGTGTGTGTGTGAGTGAGAGTGTGTGTGAGAGAGAG
TGTGTGTGTGTGAGTGTGTGTGTGAGAGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGGTACTGTATGTGTGTGCGTGTGCGAGCGAGCGTGTGTT
TGTGTTGAGGAAGGAGGGTGGGTCTGAATGTCTCGGGGATAGAGTTTTTG
GTGCGGACCTATCTGAGCTTCATGTGTATTATCATCACCCCAATTGATTC
AGTCGAAATCATGGCTCCTCTTGCGATAACAACTCTTATCTTTGAACGCA
TAATCTCTTTGGGTAAGTAAGCGAGAGCGAGAGGGAGAGAAAGAGAGGAA
GATCGGAGTTTATTTTTTGGAAGGAGAATGACAGGGAAGGAGAATAGAAG
GGAGGGAGGAGAAATGGGGAAGGGAAGAAGAGAGGCATTAACTTGAAGAT
GGCAAAGATTAGATTTTTATATCTTTCTTTGATTGTCTTCTATCTTGTCT
TCCTCGCCGCCAGCTGCGCCATTTTGATTGTACATAGCAATTGTTATAAA
TAATAAACCTTCCTCTATTTCCGCGGCCATTACCTCCTCCTCGTCCTCCT
TGTCCTCTTCCTCTCCTTGTTGCTGCCGCTTTCCCCATTTCTTTCTGTTG
GACGACCTCGGATTTGGATGAATGGTGTGATGAAAGCAGTCATAGCGGCA
GCAGCAGCGGCAGGAAGCAGCAGCGAAAGTAGCACCAGCAACGACATTTA
TGAAGCATTAATTGACGCACTTGAGATACTTGCTTAGTCATTGA
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protein sequence of NO15G01800.1

>NO15G01800.1-protein ID=NO15G01800.1-protein|Name=NO15G01800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MTTRPQLISRGGNLAFLLLHVAALAFLGVGANAFHLTPRISATADTTSFL
ITRAMRLPGLSSPRKSIKTLMWIFPPFLRNLGMGGTRLRRSSGSRSSRSS
SGSNGKPRLNASPLSYDSGPTFLHRTESSSPESEQQASPPQSSTSEGSSS
SYSYGEGNGDVVPILIKYTGGVGYKSLYTGVCRVLKERFGNITIRKTILG
VTEIRGGKKLGVFEVVVGDRSFTSKPGAPGVYLPMADIQAAIERLVVRRE
KENRILAAAAAAAAALVSEGNDGVAYQESIHP*
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Synonyms
Publications