NO15G01660, NO15G01660 (gene) Nannochloropsis oceanica

Overview
NameNO15G01660
Unique NameNO15G01660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2253
Alignment locationchr15:473694..475946 -

Link to JBrowse

Properties
Property NameValue
DescriptionNUDIX hydrolase domain-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:473694..475946 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR015797NUDIX_hydrolase_dom-like
IPR000086NUDIX_hydrolase_dom
Homology
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BLAST of NO15G01660 vs. NCBI_GenBank
Match: EWM22509.1 (NUDIX hydrolase domain-like protein [Nannochloropsis gaditana])

HSP 1 Score: 540.8 bits (1392), Expect = 6.300e-150
Identity = 329/634 (51.89%), Postives = 392/634 (61.83%), Query Frame = 0 
Query:   16 SSRPGFVALHIETLFSWLDCI---SNSNN-----SKRIVVPRFGAEQVLAYLREAEN------NRGEPLTLIIVAPGEAAKRLLVGVRGDPSLASLLEGLHIITTATVNEEETLVDLRQGIDNLLGKKGKNDDNDRSASISASVCWPLLDALLNKENTGDQTGTYASELSSNGPSENTLEQEKYTTLTVVIGITPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQRQSQAHP---PLPTLLKQQKDLPDLSEVHWPLLGLPPLVVDVQNPPFLWPRDYERAAGPSREVEARWWDPQHGQLNLIFGRGVHVGNALEVVXXXXXXXXXXXXXXXXXGKTGGRDGLQEGRMEGLESVFVTVRHDFGIVARLLADGYRIHHAAGGGKQIVLLRRFVKVEVPTAGTHICRSKVILFRRRKRGREGMDRETIQSVPEVLD-GGEEDGGREGEGKV-----------EVFLFRRRAKGIYKMPGGHVELKELAEEAAVREVWEETGYACRVVGMVALTERKDVGKKWGCSQLMFTFAAEWVQSEMRLDDAISREGKWFLLDEVDAMVAENSVALDPPLKMVWPAFRAGGRALAMSSTMPAAADVGPAAWFCHHPHCIDSGYETRKRCYM 621
            S RP  V + + +LF+ +D     S + N     ++R +VPRFGAEQVL YLRE ++      ++   L++ +VA GEAA  L+ GV  D SL  LL+G+ ++    V        L  G D   G+   +         +  V  P   A  ++  + D   T      ++  S++    E+   + +VI  +P + XXXXXXXXX                            S   +   P   P  TLL QQ  L DLS++ W  LGLPPL VDVQNPPFLWPRDYERA G ++ VEARWWD QHGQLNL+ GR VH  N LEVV                     G DG    R EGL+S+FVTVRHDFGI+ARLL DGYRIHHA GGG Q+VLLR FVKVEVPTAGTHICRSKVIL+R R+RGR G ++++  S P  +D  GE  G R+GEG+V           EVFLFRRR+KGIYKMPGGHVELKELA+EAAVREV EETG+ACRVVGMVALTERKDVGKKWGCSQLMFTFAAEWV+SEMRLDDA+SREG WF L+EVDAMVA++S ALDPPLK VWPAFRA G A              PAAWF HHP CID GYETRKRCYM
Sbjct:    4 SMRPKAVLVDVNSLFACIDTKLEGSTTGNLAMSKNRRAIVPRFGAEQVLNYLREQQSKMEKGGSQAASLSITVVASGEAAVELVRGVESDLSLKCLLQGVSVLACKHV--------LAAG-DGPQGQALLHAFLQEQRDETVGVPSPWAAARASRRESVDGCDT------ASPCSDSVYGNEQGQAVVLVIESSPCAPXXXXXXXXXMPAVCVAVYSAAGVERGNPVDSIARSTGSHASNGHGPDAIPCTTLLHQQAGLSDLSQIDWRPLGLPPLEVDVQNPPFLWPRDYERALGLAQLVEARWWDLQHGQLNLVLGRAVHAENVLEVVAEEMGRR--------------GEDGTV--RAEGLDSLFVTVRHDFGIIARLLEDGYRIHHAGGGGTQVVLLRLFVKVEVPTAGTHICRSKVILYRTRRRGRAGFNQDSKGSAPMGMDVSGEGSGRRQGEGRVAARGEGDSRSLEVFLFRRRSKGIYKMPGGHVELKELADEAAVREVREETGFACRVVGMVALTERKDVGKKWGCSQLMFTFAAEWVESEMRLDDAVSREGSWFALEEVDAMVAQDSQALDPPLKKVWPAFRARGWA--------------PAAWFRHHPQCIDPGYETRKRCYM 592
The following BLAST results are available for this feature:
BLAST of NO15G01660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22509.16.300e-15051.89NUDIX hydrolase domain-like protein [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL144nonsL144Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR066ngnoR066Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001431NSK001431Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01660.1NO15G01660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|441141gene_4712Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100011g93gene8021Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01660.1NO15G01660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01660 ID=NO15G01660|Name=NO15G01660|organism=Nannochloropsis oceanica|type=gene|length=2253bp
AGGTGTTCGTGCTTTGTTCGTCTTTCTTGGATCTGGAGTCTCTTTCGGTT
TAGTTTGCGATCTTGCTGCGGCAACGCCTGATTGAGACGCAAGAAGGGAG
AAGAAGAACATACGTCCACACAAAAAGCCCTCGCAACCATGGCAACGGTA
CCCACAGCCTCGGAGCAGGAGCAGGAGCGACATAGCTCAAGGCCAGGCTT
TGTAGCTCTGCATATAGAAACACTATTTTCCTGGCTTGATTGCATCAGCA
ACAGCAACAACAGCAAGAGGATCGTTGTGCCCCGTTTCGGGGCCGAGCAA
GTCCTGGCCTACCTCAGGGAGGCTGAAAACAACAGGGGCGAGCCATTGAC
TCTCATCATTGTGGCCCCCGGAGAAGCGGCTAAAAGGCTCTTGGTGGGCG
TACGAGGGGACCCAAGCCTGGCCTCACTGCTCGAGGGCCTGCATATCATC
ACCACTGCGACCGTGAACGAGGAAGAGACGTTGGTAGACCTTCGGCAAGG
GATAGATAATTTGCTGGGAAAGAAAGGCAAGAACGACGACAATGACAGGA
GCGCTTCAATTTCGGCGTCTGTGTGCTGGCCTTTACTTGACGCGCTGCTT
AACAAGGAGAACACGGGAGACCAGACCGGCACCTACGCCAGCGAGCTAAG
CAGCAATGGGCCATCAGAGAACACTTTAGAGCAAGAGAAATATACAACCT
TGACTGTTGTCATAGGCATCACTCCTTCTTCTTTAGCCTCACCTCCATCC
TCGTCGCCACCGTTGTTGGTGGCCGAGGTCATCTCCCTAACCCAAGCCGG
GGGGAACGGGTGCTGCAACCGCGACGACCCCTTCCTCCTCCTCTTCTCCC
AGAGGCAATCCCAGGCCCACCCTCCCCTCCCCACCCTCCTTAAACAACAA
AAGGATCTACCCGACTTGTCAGAGGTTCACTGGCCGCTTTTGGGACTACC
TCCCCTGGTGGTGGACGTTCAAAATCCTCCTTTCCTGTGGCCGAGGGACT
ACGAGCGTGCCGCTGGCCCGTCGCGAGAGGTGGAGGCCAGGTGGTGGGAT
CCGCAGCATGGACAGTTGAATCTAATTTTTGGGAGGGGGGTACATGTGGG
AAATGCATTGGAGGTGGTAGCGGCGGAGACGAGGCGGAGGTTGACGACAA
CGACGGCGGCGGCGGCGGACGGGAAGACTGGAGGGAGGGATGGCCTGCAG
GAAGGACGGATGGAGGGGTTGGAGTCAGTTTTTGTGACTGTACGACATGA
TTTCGGAATTGTGGCGCGATTGCTTGCGGACGGATATAGGATTCATCATG
CGGCGGGTGGAGGGAAACAAATTGTTCTGTTGAGAAGATTTGTCAAGGTC
GAGGTGCCAACGGCGGGGACGCACATATGTAGAAGCAAGGTGATCTTGTT
CCGAAGAAGAAAGCGAGGACGAGAAGGAATGGACAGGGAAACAATACAGT
CGGTACCAGAAGTACTAGACGGGGGGGAGGAGGATGGAGGGAGGGAGGGT
GAGGGCAAGGTGGAGGTTTTCCTTTTCCGTCGACGTGCGAAGGGAATATA
CAAGATGCCGGGTGGGCATGTGGAATTAAAGGAGCTGGCTGAGGAAGCGG
CGGTGAGAGAGGTGTGGGAAGAGACAGGCTATGCGTGCAGGGTGGTGGGG
ATGGTGGCATTGACGGAACGAAAGGATGTCGGGAAGAAGTGGGGTTGTTC
TCAGTTGATGTTTACCTTTGCGGCCGAGTGGGTGCAGAGCGAGATGAGGC
TGGATGACGCGATCAGCCGGGAGGGGAAGTGGTTTCTGTTGGATGAGGTG
GATGCGATGGTTGCGGAGAATAGCGTGGCTTTGGACCCTCCGTTGAAGAT
GGTCTGGCCGGCATTCAGGGCAGGAGGGAGGGCGCTAGCCATGTCTTCTA
CGATGCCTGCGGCAGCAGACGTAGGGCCTGCTGCCTGGTTTTGTCATCAC
CCGCATTGCATTGATTCGGGATATGAAACGAGGAAGAGGTGCTATATGAC
CGGTGGAGAGGGAAAAAGAGGGAGAGAATGCAAGGTGCAATCGGGGCAGC
AAGTGCAGTTGCAGCAGGGAGGGGGGCAGATGCCGGGGGGAATCGGGAAG
ACGGAAGGAAGTGGATCGACGGCATCGACATCGTCTTTGTCGTCAACCTC
TTCTTCGTCCTCGTCCTTGATTGCGTCATGCCACAGGGGAAATCTGAGCG
AGGGTTGTAATTCGTTGATTAATTGCTTAGAGGGCGGTCATGGGAATGAC
TAG
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protein sequence of NO15G01660.1

>NO15G01660.1-protein ID=NO15G01660.1-protein|Name=NO15G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=705bp
MATVPTASEQEQERHSSRPGFVALHIETLFSWLDCISNSNNSKRIVVPRF
GAEQVLAYLREAENNRGEPLTLIIVAPGEAAKRLLVGVRGDPSLASLLEG
LHIITTATVNEEETLVDLRQGIDNLLGKKGKNDDNDRSASISASVCWPLL
DALLNKENTGDQTGTYASELSSNGPSENTLEQEKYTTLTVVIGITPSSLA
SPPSSSPPLLVAEVISLTQAGGNGCCNRDDPFLLLFSQRQSQAHPPLPTL
LKQQKDLPDLSEVHWPLLGLPPLVVDVQNPPFLWPRDYERAAGPSREVEA
RWWDPQHGQLNLIFGRGVHVGNALEVVAAETRRRLTTTTAAAADGKTGGR
DGLQEGRMEGLESVFVTVRHDFGIVARLLADGYRIHHAAGGGKQIVLLRR
FVKVEVPTAGTHICRSKVILFRRRKRGREGMDRETIQSVPEVLDGGEEDG
GREGEGKVEVFLFRRRAKGIYKMPGGHVELKELAEEAAVREVWEETGYAC
RVVGMVALTERKDVGKKWGCSQLMFTFAAEWVQSEMRLDDAISREGKWFL
LDEVDAMVAENSVALDPPLKMVWPAFRAGGRALAMSSTMPAAADVGPAAW
FCHHPHCIDSGYETRKRCYMTGGEGKRGRECKVQSGQQVQLQQGGGQMPG
GIGKTEGSGSTASTSSLSSTSSSSSSLIASCHRGNLSEGCNSLINCLEGG
HGND*
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Synonyms
Publications