NO15G01560, NO15G01560 (gene) Nannochloropsis oceanica

Overview
NameNO15G01560
Unique NameNO15G01560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1776
Alignment locationchr15:439240..441015 +

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Properties
Property NameValue
DescriptionTranslation protein SH3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:439240..441015 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like
IPR005756Ribosomal_L26/L24P_euk/arc
IPR005824KOW
Homology
BLAST of NO15G01560 vs. NCBI_GenBank
Match: EWM22436.1 (Translation protein SH3 [Nannochloropsis gaditana])

HSP 1 Score: 256.1 bits (653), Expect = 6.400e-65
Identity = 133/145 (91.72%), Postives = 139/145 (95.86%), Query Frame = 0
Query:    1 MKFSPNVSSSRRKSRKAHFTAPSHVRRTIMTAPLSKELQAKYKVRSMPIRKDDEVQVVRGGFKNREGKVTTVYRKKFVIHIDRITREKANGATVHVGIDASKVHITKLKLNKARKEILERKARTGAGSKGKVTEAEVGANMGGVD 146
            MK+SPNVSSSRRKSRKAHFTAPSH+RR +MTAPLSKELQAKYKVRSMPIRK DEVQVVRG FKNREGKVT VYRKKFVIHIDRITREKANGATV+VGIDASKVHITKLK+NKARKEILERKARTGA  KGKVTEAEVG+NMGGVD
Sbjct:    9 MKYSPNVSSSRRKSRKAHFTAPSHIRRKLMTAPLSKELQAKYKVRSMPIRKSDEVQVVRGVFKNREGKVTAVYRKKFVIHIDRITREKANGATVNVGIDASKVHITKLKMNKARKEILERKARTGAAGKGKVTEAEVGSNMGGVD 153          
BLAST of NO15G01560 vs. NCBI_GenBank
Match: XP_013899158.1 (60S ribosomal protein L26-1 [Monoraphidium neglectum] >KIZ00139.1 60S ribosomal protein L26-1 [Monoraphidium neglectum])

HSP 1 Score: 187.2 bits (474), Expect = 3.600e-44
Identity = 101/138 (73.19%), Postives = 116/138 (84.06%), Query Frame = 0
Query:    2 KFSPNVSSSRRKSRKAHFTAPSHVRRTIMTAPLSKELQAKYKVRSMPIRKDDEVQVVRGGFKNREGKVTTVYRKKFVIHIDRITREKANGATVHVGIDASKVHITKLKLNKARKEILERKARTGAGSKGKVTEAEVGA 140
            KFS  VSSSRRKSRKAHF+APS+VRR +M++PL+ EL+ KY V+++PIRKDDEVQVVRG FK REGKVTTVYRKK+VIHI+RITREK NGATV VGID SKV ITKLKL+K R+ +LERKA    G KGK TE EV A
Sbjct:    3 KFSSAVSSSRRKSRKAHFSAPSNVRRKLMSSPLNAELKQKYNVKAVPIRKDDEVQVVRGTFKGREGKVTTVYRKKWVIHIERITREKVNGATVSVGIDPSKVVITKLKLDKDRRALLERKAAGRGGDKGKFTEQEVQA 140          
BLAST of NO15G01560 vs. NCBI_GenBank
Match: GAX97142.1 (ribosomal protein L24, partial [Pythium insidiosum])

HSP 1 Score: 185.7 bits (470), Expect = 1.100e-43
Identity = 103/144 (71.53%), Postives = 118/144 (81.94%), Query Frame = 0
Query:    2 KFSPNVSSSRRKSRKAHFTAPSHVRRTIMTAPLSKELQAKYKVRSMPIRKDDEVQVVRGGFKNREGKVTTVYRKKFVIHIDRITREKANGATVHVGIDASKVHITKLKLNKARKEILERKARTGAGSKGKVTEAEVGANMGGVD 146
            KF+  VSSSRRKSRKAHF + S  RR +M+APLSKELQ KY VRS+PIRKDDEV +VRG FKNREG+VTTVYRKKFVIH++R+ REKANGATV VGIDASKV ITK+KL+K RK+ILERK R    +KGK TEA+V   M  VD
Sbjct:    1 KFNSAVSSSRRKSRKAHFGSHSTARRVLMSAPLSKELQKKYNVRSLPIRKDDEVTIVRGSFKNREGRVTTVYRKKFVIHVERVVREKANGATVPVGIDASKVVITKIKLDKDRKKILERKNR-ATDAKGKFTEADV--QMANVD 141          
BLAST of NO15G01560 vs. NCBI_GenBank
Match: PKA62036.1 (60S ribosomal protein L26-2 [Apostasia shenzhenica])

HSP 1 Score: 184.5 bits (467), Expect = 2.400e-43
Identity = 99/141 (70.21%), Postives = 117/141 (82.98%), Query Frame = 0
Query:    1 MKFSPNVSSSRRKSRKAHFTAPSHVRRTIMTAPLSKELQAKYKVRSMPIRKDDEVQVVRGGFKNREGKVTTVYRKKFVIHIDRITREKANGATVHVGIDASKVHITKLKLNKARKEILERKARTGAG--SKGKVTEAEVGA 140
            MKF+P VSSSRRK+RKAHFTAPS VRR +M+APLS +L+ KY VRS+P+RKDDEVQVVRG FK REGKV  VYRKK+VIHI+RITREK NG+TV+VGID SKV +TKLKL+K RK +L+RKAR  A   +KGK +  EV A
Sbjct:    1 MKFNPRVSSSRRKNRKAHFTAPSSVRRKLMSAPLSSDLRGKYNVRSIPVRKDDEVQVVRGTFKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGIDPSKVVVTKLKLDKDRKSLLDRKARGRAADKAKGKFSAEEVAA 141          
BLAST of NO15G01560 vs. NCBI_GenBank
Match: XP_020680842.1 (60S ribosomal protein L26-2-like [Dendrobium catenatum] >PKU64061.1 60S ribosomal protein L26-2 [Dendrobium catenatum])

HSP 1 Score: 184.1 bits (466), Expect = 3.100e-43
Identity = 99/141 (70.21%), Postives = 116/141 (82.27%), Query Frame = 0
Query:    1 MKFSPNVSSSRRKSRKAHFTAPSHVRRTIMTAPLSKELQAKYKVRSMPIRKDDEVQVVRGGFKNREGKVTTVYRKKFVIHIDRITREKANGATVHVGIDASKVHITKLKLNKARKEILERKARTGAG--SKGKVTEAEVGA 140
            MKF+P VSSSRRK RKAHFTAPS VRR +M+APLS +L+ KY VRSMP+RKDDEVQVVRG +K REGK+  VYRKK+VIHI+RITREK NG+TV+VGID SKV ITKLKL+K RK +L+RKAR  A   +KGK +  EV A
Sbjct:    1 MKFNPRVSSSRRKCRKAHFTAPSSVRRKLMSAPLSSDLRGKYSVRSMPVRKDDEVQVVRGTYKGREGKIVQVYRKKWVIHIERITREKVNGSTVNVGIDPSKVVITKLKLDKDRKSLLDRKARGRAADKAKGKFSAEEVAA 141          
BLAST of NO15G01560 vs. NCBI_GenBank
Match: XP_005645950.1 (ribosomal protein L24 [Coccomyxa subellipsoidea C-169] >EIE21406.1 ribosomal protein L24 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 183.3 bits (464), Expect = 5.300e-43
Identity = 96/139 (69.06%), Postives = 116/139 (83.45%), Query Frame = 0
Query:    1 MKFSPNVSSSRRKSRKAHFTAPSHVRRTIMTAPLSKELQAKYKVRSMPIRKDDEVQVVRGGFKNREGKVTTVYRKKFVIHIDRITREKANGATVHVGIDASKVHITKLKLNKARKEILERKARTGAGSKGKVTEAEVGA 140
            MKFS  VSSSRRKSRKAHF+APS+VRR +M+APLSKEL+ KY V ++P+RKDDEV VVRG +K REGK+  VYRKK+VIHI+RITREK NGATV+VGID SKV +TKLKL+K RK +L+RK +    +KGK +EAEV A
Sbjct:    1 MKFSTTVSSSRRKSRKAHFSAPSNVRRKLMSAPLSKELRTKYSVNAVPVRKDDEVSVVRGTYKGREGKIVQVYRKKWVIHIERITREKVNGATVNVGIDPSKVVVTKLKLDKDRKGLLDRKGKKDDKNKGKFSEAEVEA 139          
BLAST of NO15G01560 vs. NCBI_GenBank
Match: XP_009413648.1 (PREDICTED: 60S ribosomal protein L26-2-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 182.6 bits (462), Expect = 9.000e-43
Identity = 99/145 (68.28%), Postives = 119/145 (82.07%), Query Frame = 0
Query:    1 MKFSPNVSSSRRKSRKAHFTAPSHVRRTIMTAPLSKELQAKYKVRSMPIRKDDEVQVVRGGFKNREGKVTTVYRKKFVIHIDRITREKANGATVHVGIDASKVHITKLKLNKARKEILERKARTGAG--SKGKVTEAEVGANMGG 144
            MK++P VSSSRRKSRKAHFTAPS VRR +M+APLS +L+ KY VRS+P+RKDDEVQVVRG FK REGKV  VYR+K+VIH++RITREK NGATV+VGI+ SKV ITKLKL+K RK +L+RKAR  A   +KGK +  EV A + G
Sbjct:    1 MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSADLRNKYNVRSVPVRKDDEVQVVRGTFKGREGKVVQVYRRKWVIHVERITREKVNGATVNVGINPSKVVITKLKLDKDRKALLDRKARGRAADKAKGKFSAEEVAAAVAG 145          
BLAST of NO15G01560 vs. NCBI_GenBank
Match: PRW60014.1 (60S ribosomal L26-1 [Chlorella sorokiniana])

HSP 1 Score: 182.6 bits (462), Expect = 9.000e-43
Identity = 103/146 (70.55%), Postives = 118/146 (80.82%), Query Frame = 0
Query:    1 MKFSPNVSSSRRKSRKAHFTAPSHVRRTIMTAPLSKELQAKYKVRSMPIRKDDEVQVVRGGFKNREGKVTTVYRKKFVIHIDRITREKANGATVHVGIDASKVHITKLKLNKARKEILERK-ARTGAGSKGKVTEAEVGANMGGVD 146
            MKFS  V+SSRRK RKAHFTAPS VRR +M+APLS EL+ KY VRS+PIRKDDEV VVRG +K REGKV  VYRKK+VIHI+RITREK NGATV+VG+D SKV +TKLKL+K R+++LERK A  G   KGK TEAEV A M  VD
Sbjct:    1 MKFSSAVTSSRRKCRKAHFTAPSSVRRKLMSAPLSTELRNKYGVRSVPIRKDDEVSVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGATVNVGVDPSKVVVTKLKLDKDRRQLLERKRAGKGLADKGKFTEAEVAA-MENVD 145          
BLAST of NO15G01560 vs. NCBI_GenBank
Match: XP_020593265.1 (60S ribosomal protein L26-1-like [Phalaenopsis equestris])

HSP 1 Score: 181.8 bits (460), Expect = 1.500e-42
Identity = 98/141 (69.50%), Postives = 116/141 (82.27%), Query Frame = 0
Query:    1 MKFSPNVSSSRRKSRKAHFTAPSHVRRTIMTAPLSKELQAKYKVRSMPIRKDDEVQVVRGGFKNREGKVTTVYRKKFVIHIDRITREKANGATVHVGIDASKVHITKLKLNKARKEILERKARTGAG--SKGKVTEAEVGA 140
            MK +P VSSSRRKSRKAHFTAPS VRR +M+APLS +L+ KY VRS+P+RKDDEVQVVRG +K REGK+  VYRKK+VIHI+RITREK NG+TV+VGID SKV ITKLKL+K RK +L+RKAR  A   +KGK +  EV A
Sbjct:    1 MKVNPRVSSSRRKSRKAHFTAPSSVRRKLMSAPLSSDLRGKYSVRSIPVRKDDEVQVVRGTYKGREGKIVQVYRKKWVIHIERITREKVNGSTVNVGIDPSKVVITKLKLDKDRKSLLDRKARGRAADKAKGKFSAEEVAA 141          
BLAST of NO15G01560 vs. NCBI_GenBank
Match: PSC67418.1 (60S ribosomal L26-1 [Micractinium conductrix])

HSP 1 Score: 181.8 bits (460), Expect = 1.500e-42
Identity = 102/146 (69.86%), Postives = 117/146 (80.14%), Query Frame = 0
Query:    1 MKFSPNVSSSRRKSRKAHFTAPSHVRRTIMTAPLSKELQAKYKVRSMPIRKDDEVQVVRGGFKNREGKVTTVYRKKFVIHIDRITREKANGATVHVGIDASKVHITKLKLNKARKEILERK-ARTGAGSKGKVTEAEVGANMGGVD 146
            MKFS  VSSSRRK RKAHFTAPS +RR +M+APLS EL+ KY VRS+PIRKDDEV VVRG +K REGKV  VYRKK+VIH++RITREK NGATV+VG+D SKV +TKLKL+K RK +LERK A  G   KGK +EAEV A M  VD
Sbjct:    1 MKFSATVSSSRRKCRKAHFTAPSSLRRKLMSAPLSTELRNKYGVRSVPIRKDDEVTVVRGNYKGREGKVVQVYRKKWVIHVERITREKVNGATVNVGVDPSKVVVTKLKLDKDRKALLERKRAGKGLADKGKFSEAEVAA-MENVD 145          
The following BLAST results are available for this feature:
BLAST of NO15G01560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Position :
0
Zoom :
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2004006008001000120014001600SequenceEWM22436.1XP_013899158.1GAX97142.1PKA62036.1XP_020680842.1XP_005645950.1XP_009413648.1PRW60014.1XP_020593265.1PSC67418.1
Match NameE-valueIdentityDescription
EWM22436.16.400e-6591.72Translation protein SH3 [Nannochloropsis gaditana][more]
XP_013899158.13.600e-4473.1960S ribosomal protein L26-1 [Monoraphidium neglect... [more]
GAX97142.11.100e-4371.53ribosomal protein L24, partial [Pythium insidiosum... [more]
PKA62036.12.400e-4370.2160S ribosomal protein L26-2 [Apostasia shenzhenica... [more]
XP_020680842.13.100e-4370.2160S ribosomal protein L26-2-like [Dendrobium caten... [more]
XP_005645950.15.300e-4369.06ribosomal protein L24 [Coccomyxa subellipsoidea C-... [more]
XP_009413648.19.000e-4368.28PREDICTED: 60S ribosomal protein L26-2-like [Musa ... [more]
PRW60014.19.000e-4370.5560S ribosomal L26-1 [Chlorella sorokiniana][more]
XP_020593265.11.500e-4269.5060S ribosomal protein L26-1-like [Phalaenopsis equ... [more]
PSC67418.11.500e-4269.8660S ribosomal L26-1 [Micractinium conductrix][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01560.1NO15G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587563gene_4700Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100011g77gene8005Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01560.1NO15G01560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01560 ID=NO15G01560|Name=NO15G01560|organism=Nannochloropsis oceanica|type=gene|length=1776bp
TCGTCGAAACACGCATTCAAATCGAGCAAAAATATATGAAATACACAAGT
ACTCAGTTTTGAATACTACACTTTGCGCTAAGGTGTCGTTTGGTGACAAG
TGTCTGTATGTGGTGGTCGATGTTTAAGAGGGAATTCCAGAAGGGGCGAC
GTTTCTGTGACGCTGACACAGTCCGCGCTGTCTTCCGGCGGCAGTGAGCA
CCACACACATGAGGTTTCGTTCCTCGCCTCCACCGTGACCAGGTCAATGC
CCTACATATCCTCCACCCAAGATTGGCCCCAAGCCTAATGAAGTGTACAC
ATACCCAACAAACGCGGCTGATGGTGGTGGGGAGGTCCAATGGAGACGAA
GCGGTTTTCGGTGTTGACTGCTCCTCGTTAGTCGTGAGTGGGTGGGAGGC
CATCGCCTTCTTCAGGCCTCCACATGCCTTGCCCACACCCTTATGAGGCA
CTGACATCCTCTGTCGGGACAAGTGCAGCATTGTAGCTTGCCTATATTTC
CTAGCCAGATATATGCCATACCAGCTGTATCGGAAGGCCCAGCCTGGCGT
GGTCAATTCCTCGTTGCTTCGCCTCACCCCTTCATCATCGTCCACTGCAT
GCCTTCCCTCACCCACCTGTACTCACAGACCCTTCCATCTCCTCACATAA
ACCATCGCAGGCAGGATGAAGTTTAGCCCTAACGTCTCGTCCTCCCGTCG
CAAGAGCCGCAAGGCTCACTTCACGGCCCCTTCTCACGTGAGGCGGACAA
TCATGACGGCGCCTCTGTCCAAGGAGCTCCAGGCCAAGTATAAGgtacgt
gcgcgcggcgggcttggtaaaagagctgagatagaaagaagaaagagagc
agaggatatagagtcattatgcatgtagatatgctgtggaaggagaggag
caaggaaatcagtgtaacaacaacatggcgtggaggcatatcggtaggag
aggctgcaccaggcctgcgacactgcacattttttgtacggtttcttggt
ctccctcctttctcttcagcacatttgtttcgtagtgacagggatgttgg
acgggagatcgaggggtcttcatgagccatcactatcaccatgagcagca
gcacgtctcctatttttgtgttcatcgtccacacacgcatgctcacttct
ttctgtctccctcctttcctcattaccaacccagGTCCGATCCATGCCCA
TTCGCAAAGATGATGAGGTGCAAGTCGTGCGTGGCGGGTTCAAGAACCGA
GAGGGGAAGGTCACGACGGTATACCGCAAGAAGTTCGTCATCCACATCGA
CAGAATCACCCGCGAGAAGGCCAATGGCGCCACAGTCCATGTCGGGATCG
ATGCCTCCAAGGTACACATCACCAAGCTTAAGCTAAACAAGGCCCGCAAA
GAGATTTTGGAGCGCAAGGCACGCACGGGTGCGGGGAGCAAAGGGAAGGT
GACAGAGGCGGAAGTTGGAGCGAACATGGGTGGCGTCGATTGAAAAAGCA
AGATCAACGCGGATGAGGAAAGATTAGTGGAAAGGGAGGATTAGGGCATC
CCTCCTAGGCGGCGACGGCGACGACGACATTATGTAGAGAAGACTCCGGC
AACAATACCTTTTTACCCTTGGAGGTTCTTGGTCTATCTGCTTATGTTCC
GGCGGTTGAGGTGGTCAGGGGTGAGTGGGATGAGGAATGGGAAGGGACTT
CTCTCGTGGTCCACTGCGCTCGATATCTTGCTGAGGACAAATAAAAAGAA
AGAAGAGACTGACAGGGAAAACACGA
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protein sequence of NO15G01560.1

>NO15G01560.1-protein ID=NO15G01560.1-protein|Name=NO15G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=146bp
MKFSPNVSSSRRKSRKAHFTAPSHVRRTIMTAPLSKELQAKYKVRSMPIR
KDDEVQVVRGGFKNREGKVTTVYRKKFVIHIDRITREKANGATVHVGIDA
SKVHITKLKLNKARKEILERKARTGAGSKGKVTEAEVGANMGGVD*
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Synonyms
Publications