NO15G01480, NO15G01480 (gene) Nannochloropsis oceanica

Overview
NameNO15G01480
Unique NameNO15G01480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1806
Alignment locationchr15:416310..418115 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:416310..418115 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO15G01480 vs. NCBI_GenBank
Match: EWM22496.1 (hypothetical protein Naga_100011g67 [Nannochloropsis gaditana])

HSP 1 Score: 310.8 bits (795), Expect = 9.000e-81
Identity = 157/280 (56.07%), Postives = 198/280 (70.71%), Query Frame = 0 
Query:    3 ERFDRSAIDILLNG----TDAEVRVPAARQAAFKIRSDPALLPLDMVRAGTEEYHLFAPKRRPIVGPPPSMAGHQPPYPSMRERLPQWIPSKIKWPLEDALSRLLGESPEQRPWLLQMEVSWPHGQRWYYGMGLWVLCPLLAWIAGMSLATVLAGWLVGVVHGIFLRVRMEKRFDWSTDWVGLVGTIVALCLVVHFSEASHSWREWTVGAMLWKPLGGCLGAVKWPVVLYVSLGLPFYQDQNAARYSNDVVVMSMFTLTLVYASNFCLPLGIWCGAVLKM 279
            +RFDRSA DILLNG      +EVR+  + + A K+RSDPALLPL+MVR GTEEY LFAPKR        S+   Q PYP ++ERLP+W+P ++KWPLE+AL R LGE P Q PWLLQ++VSWP G RW  G  L VLCPLLAW +GMSLATV+AG   G +HGIFLR+R EK FDW+    GL+ +  AL L +  S    + R WT  A+LWKPL GCLG  +W +V++VSL LPF++D  A+ YS+D V + M  LTL+YASNF +PLG+W G +LK+
Sbjct:    5 KRFDRSATDILLNGGLQERGSEVRMLPSWEGASKVRSDPALLPLNMVRIGTEEYQLFAPKR----DESRSVTPRQAPYP-VKERLPRWLPPRLKWPLENALGRFLGERPRQPPWLLQVDVSWPSGHRWNKGAALMVLCPLLAWSSGMSLATVMAGTGTGFLHGIFLRIRTEKCFDWNVCKGGLMASSAALYLALAVSGTPPALRGWTARALLWKPLSGCLGLAEWFLVMWVSLLLPFFKDPKASYYSSDTVTVGMLLLTLLYASNFMVPLGLWAGTLLKV 279
The following BLAST results are available for this feature:
BLAST of NO15G01480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22496.19.000e-8156.07hypothetical protein Naga_100011g67 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001459NSK001459Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01480.1NO15G01480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100011g67gene7997Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01480.1NO15G01480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01480 ID=NO15G01480|Name=NO15G01480|organism=Nannochloropsis oceanica|type=gene|length=1806bp
ATGGCCGAGCGCTTCGACCGCTCCGCCATTGACATCTTGTTAAATGGGAC
CGATGCCGAAGTGCGAGTCCCCGCCGCCCGCCAGGCCGCCTTCAAAATAC
GCTCAGACCCGGCCCTACTACCCCTCGACATGGTACGGGCCGGCACAGAG
GAGTACCACCTCTTTGCACCCAAACGCCGTCCGATAGTGGGGCCACCGCC
TTCCATGGCGGGTCATCAGCCTCCATATCCCTCTATGAGGGAGCGCTTGC
CGCAGTGGATCCCATCAAAAATCAAATGGCCCTTGGAAGACGCGTTGAGC
CGCCTCTTGGGCGAAAGCCCCGAGCAACGACCGTGGCTGCTGCAAATGGA
GGTGTCGTGGCCGCATGGACAGCGGTGGTACTATGGAATGGGATTATGGG
TGTTGTGTCCACTGCTGGCTTGGATAGCGGGGATGAGCCTAGCGACTGTA
CTGGCGGGATGGCTTGTTGGGGTTGTGCATGGCATCTTCTTGCGGGTCCG
AATGGAGAAACGCTTTGATTGGAGCACAGATTGGGTGGGGTTGGTAGGGA
CAATTGTGGCTCTATGTCTGGTCGTGCACTTTTCTGAGGCCTCTCATTCG
TGGCGCGAATGGACGGTAGGAGCAATGTTGTGGAAGCCATTGGGTGGGTG
CTTGGGCGCGGTGAAATGGCCTGTGGTCCTGTATGTCTCGCTCGGTCTTC
CCTTTTACCAAGACCAAAACGCAGCGCGCTACAGCAATGATGTTGTAGTT
ATGTCCATGTTCACCTTGACCCTGGTATATGCGAGCAATTTCTGTTTACC
GCTTGGCATCTGGTGCGGGGCCGTGCTCAAGATGATCCATCCTACCACAC
TTTCTCCTCTACCGCCGATGCTGCCCCCTCCAAGACTTGTGGCAGCAGCA
GGAGAAGAACTCCAGGTCCCCTCTATGCTTAAAGGCATGGTGGACACGCC
GCTTCAGCAGCAGCAACAACAGCAGCATCAGTTGCAGCAGCAGCAGCTAC
AGTACATCCAACAGCAGCAGCAAATGCAGGCATTGTACCGTCAGCAGGAC
CCGTATGGCATTTCTCCCAATGCTGCTGCTGCTGGTGCTGCTGGTGGTGG
TGCTGCTGCTTCTTCTTCTGCTAACTGGATCTCGCCTAGCCTGATATCGC
AAAGCCCCCAGCAGCAGCAACGAGTATTGCTGCAACAGCAGCAGTGGCTG
CTGCAGCAGCACCTACAGCAACTACAACAGCCGCCGATGACGGAAAGAGA
AAGCCTGAGGGCTGCAGCTGCCTTGCTAAAGCTGCAGCAGGAGGGTACAT
CGAACCATCCCCGGCGATGGTTGAAGCCGGAGGAGGAAGACGTCAGCAGC
AACTACACCAGCAGCATGTCACCTTTCCCCTCGGGGAGCTCTCGTCGACG
AAGTTCTTTGTCGGGAAGGATGCAGAGTCTTGATGCTGGAGGAGGAGAGG
GGGCAGGGGTTGGAGAAGGAGATGGGTTATATGGCGGCGGTGGTATTGGC
AGGAGGAATCGGTGGAGTGGAGGCAGAAATGGAGAAGGAAGAGGAGGGGG
ACAGTGGGGGGAGGAAGCGGGCAAGGGAGGACAAGATGGCGGGCGCAGGT
ATGGGTTGAGGTCACGAAGAGGCCGAAGGGTAGGAGGAGGAGAACTAGAG
CCGACGGCGATGGACCTGTCATCATCGCCTCCTCCGCCGACTCCACTGGA
TTTTGAGGATTTTGTAAGTGACGGTAACAATGGAATGTATGGGCGAAGGG
GTGGGATAGGAGGAGGAAGGGTGGGCCGCTACGAGACATTGAATCCGAAC
CGTTGA
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protein sequence of NO15G01480.1

>NO15G01480.1-protein ID=NO15G01480.1-protein|Name=NO15G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp
MAERFDRSAIDILLNGTDAEVRVPAARQAAFKIRSDPALLPLDMVRAGTE
EYHLFAPKRRPIVGPPPSMAGHQPPYPSMRERLPQWIPSKIKWPLEDALS
RLLGESPEQRPWLLQMEVSWPHGQRWYYGMGLWVLCPLLAWIAGMSLATV
LAGWLVGVVHGIFLRVRMEKRFDWSTDWVGLVGTIVALCLVVHFSEASHS
WREWTVGAMLWKPLGGCLGAVKWPVVLYVSLGLPFYQDQNAARYSNDVVV
MSMFTLTLVYASNFCLPLGIWCGAVLKMIHPTTLSPLPPMLPPPRLVAAA
GEELQVPSMLKGMVDTPLQQQQQQQHQLQQQQLQYIQQQQQMQALYRQQD
PYGISPNAAAAGAAGGGAAASSSANWISPSLISQSPQQQQRVLLQQQQWL
LQQHLQQLQQPPMTERESLRAAAALLKLQQEGTSNHPRRWLKPEEEDVSS
NYTSSMSPFPSGSSRRRSSLSGRMQSLDAGGGEGAGVGEGDGLYGGGGIG
RRNRWSGGRNGEGRGGGQWGEEAGKGGQDGGRRYGLRSRRGRRVGGGELE
PTAMDLSSSPPPPTPLDFEDFVSDGNNGMYGRRGGIGGGRVGRYETLNPN
R*
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Synonyms
Publications