NO15G01450, NO15G01450 (gene) Nannochloropsis oceanica

Overview
NameNO15G01450
Unique NameNO15G01450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length831
Alignment locationchr15:409917..410747 -

Link to JBrowse

Properties
Property NameValue
DescriptionCCR4-NOT transcription complex subunit 10
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:409917..410747 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Homology
[Close]
BLAST of NO15G01450 vs. NCBI_GenBank
Match: XP_005853792.1 (CCR4-NOT transcription complex subunit 10 [Nannochloropsis gaditana CCMP526] >EKU22565.1 CCR4-NOT transcription complex subunit 10 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 274.2 bits (700), Expect = 4.300e-70
Identity = 152/202 (75.25%), Postives = 168/202 (83.17%), Query Frame = 0 
Query:   70 AGSEGGPASPQEQDDAVVEQVALLTLSYVYLCLQEPVLALRSSEALLSRGPGWM-SESKRVTAHTYAAEALCVLGQPEEALKHLLSSPGSTPLSEEAAVSALQEQRQSESKAVVMTADSFLPPEHFAAQARSALHLNLANVYLLQNNLAAAEECVRAGLAACPTSPDALRSLLFILLRTGNTTAALEALKSRRPLNLGGPAS 271
            A ++    S QEQ DA VEQV LLTLSYVYLCL EPVLAL  +E LL+RG GW   E  RV A TYAAEALCVLG+P+EALKHLL  PG TPLSEEA VS+LQ+Q Q+ESK VV+TA+SFLPPEHFAA+AR ALHLNLANVYLLQNNLAAAE+CV  GLAACPTSPDALR L+FILLRTGNT+AALEALKSRRPL+L  P S
Sbjct:  624 ASADKKRGSWQEQGDAQVEQVVLLTLSYVYLCLHEPVLALHYAELLLTRGAGWAEDEGNRVAARTYAAEALCVLGRPDEALKHLL--PGGTPLSEEAGVSSLQKQCQAESKRVVVTAESFLPPEHFAARARCALHLNLANVYLLQNNLAAAEKCVGLGLAACPTSPDALRCLVFILLRTGNTSAALEALKSRRPLSLSVPPS 823
[Close]
BLAST of NO15G01450 vs. NCBI_GenBank
Match: EWM22463.1 (ccr4-not transcription complex subunit 10-like protein [Nannochloropsis gaditana])

HSP 1 Score: 272.7 bits (696), Expect = 1.200e-69
Identity = 151/202 (74.75%), Postives = 167/202 (82.67%), Query Frame = 0 
Query:   70 AGSEGGPASPQEQDDAVVEQVALLTLSYVYLCLQEPVLALRSSEALLSRGPGWM-SESKRVTAHTYAAEALCVLGQPEEALKHLLSSPGSTPLSEEAAVSALQEQRQSESKAVVMTADSFLPPEHFAAQARSALHLNLANVYLLQNNLAAAEECVRAGLAACPTSPDALRSLLFILLRTGNTTAALEALKSRRPLNLGGPAS 271
            A ++    S QEQ DA VEQV LLTLSYVYLCL EPVLAL  +E LL+RG GW   E  RV A TYAAEALCVLG+P+EALKHLL  PG TPLSEE  VS+LQ+Q Q+ESK VV+TA+SFLPPEHFAA+AR ALHLNLANVYLLQNNLAAAE+CV  GLAACPTSPDALR L+FILLRTGNT+AALEALKSRRPL+L  P S
Sbjct:  624 ASADKKRGSWQEQGDAQVEQVVLLTLSYVYLCLHEPVLALHYAELLLTRGAGWAEDEGNRVAARTYAAEALCVLGRPDEALKHLL--PGGTPLSEEVGVSSLQKQCQAESKRVVVTAESFLPPEHFAARARCALHLNLANVYLLQNNLAAAEKCVGLGLAACPTSPDALRCLVFILLRTGNTSAALEALKSRRPLSLSVPPS 823
[Close]
BLAST of NO15G01450 vs. NCBI_GenBank
Match: OQR88054.1 (CCR4-NOT transcription complex subunit [Achlya hypogyna])

HSP 1 Score: 85.1 bits (209), Expect = 3.700e-13
Identity = 69/201 (34.33%), Postives = 96/201 (47.76%), Query Frame = 0 
Query:   66 ESLTAGSEGGPASPQEQDDAV--VEQVALLTLSYVYLCLQEPVLALRSSEALLSRGPGWMSESKRVTAHTYAAEALCVLGQPEEALKHLLSSPGSTPLSEEAAVSALQEQRQSESKAVVMTADSFLPPEHFAAQARSALHLNLANVYLLQNNLAAAEECVRAGLAACPTSPDALRSLLFILLRTGNTTAALEALKSRRPLN 265
            E+  A    G A  Q   D +  V Q AL+ L+Y  LC+ EP LAL +   LL+     +++  R  A TY AEAL +L +  EA        GS   + E  V A +  R++        AD               +H+N A   LLQ N+A AE+ V   +  CPTS  AL+ L+++LLR GNT  A++ LK  R  N
Sbjct:  520 EARAAEKADGDADAQWAPDGLEAVRQKALVHLAYANLCMHEPHLALATCRELLALPT--LTKGNRYLARTYGAEALSLLSRSAEA--------GSLLKTNEMLVLAEEYAREAHVDVAATQAD---------------VHVNNATACLLQKNMAVAEQSVALAVRTCPTSRVALQQLVYVLLRKGNTKKAMQILKEARVTN 695
[Close]
BLAST of NO15G01450 vs. NCBI_GenBank
Match: XP_012196628.1 (hypothetical protein SPRG_02674 [Saprolegnia parasitica CBS 223.65] >KDO32983.1 hypothetical protein SPRG_02674 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 84.3 bits (207), Expect = 6.300e-13
Identity = 69/196 (35.20%), Postives = 99/196 (50.51%), Query Frame = 0 
Query:   71 GSEGGPASPQEQDDAV--VEQVALLTLSYVYLCLQEPVLALRSSEALLSRGPGWMSESKRVTAHTYAAEALCVLGQPEEALKHLLSSPGSTPLSEEAAVSALQEQRQSESKAVVMTADSFLPPEHFAAQARSALHLNLANVYLLQNNLAAAEECVRAGLAACPTSPDALRSLLFILLRTGNTTAALEALKSRRPLN 265
            G+E    +P    DA+  V Q AL+ L+Y YL L EP LAL +   LLS     ++++ R    +YAAEAL +L +  EA           PL +   +  L ++   E+K               AA A++ +H+N A   LLQ N+A AE+ V   +  CPTS  AL  L+++LLR GN+  AL+ LK  R  N
Sbjct:  518 GNESEMEAPAWTADALDAVRQKALVHLAYAYLSLAEPQLALATCHELLS--VPTLTKAHRYLGRSYAAEALSLLSRSNEA----------APLLKTNEMVVLADEYAREAKG-------------DAASAQADVHVNNATACLLQKNMALAEQHVALAVRTCPTSRVALEQLVYVLLRKGNSKKALQILKEARVTN 688
[Close]
BLAST of NO15G01450 vs. NCBI_GenBank
Match: CBJ25843.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 81.6 bits (200), Expect = 4.100e-12
Identity = 65/203 (32.02%), Postives = 88/203 (43.35%), Query Frame = 0 
Query:   89 QVALLTLSYVYLCLQEPVLALRSSEALLSRGPGWMSESKRVTAHTYAAEALCVLGQPEEALKHLLSSPGSTPLSEEAA------------------------------VSALQEQRQSESKAVVMTADSFLPPEHFAAQARSALHLNLANVYLLQNNLAAAEECVRAGLAACPTSPDALRSLLFILLRTGNTTAALEALKSRR 262
            +VAL  L+YV+L L +PV AL  +  LL   P  +S      AH YAAEALC+LG+P EAL+HL      +P+SE A                                                             +AR++LH NLA V+ L  +L  AE C R  +  CP S   LR+ +++L+R GN   AL+ LK  R
Sbjct:  726 RVALADLAYVHLGLDDPVSALTYAGRLLETNPSAVSTH---LAHLYAAEALCLLGRPAEALEHL------SPISENACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEARASLHANLAVVHALSGSLGQAERCARTAMGICPGSGAVLRTAVYVLVRQGNIAEALQVLKEGR 919
[Close]
BLAST of NO15G01450 vs. NCBI_GenBank
Match: GAQ79297.1 (CCR4-NOT transcription complex subunit 10 [Klebsormidium nitens])

HSP 1 Score: 79.3 bits (194), Expect = 2.000e-11
Identity = 68/201 (33.83%), Postives = 98/201 (48.76%), Query Frame = 0 
Query:   67 SLTAGSEGGPASPQEQDDAVVEQVALLTLSYVYLCLQEPVLALRSSEALLSRGPGWMSESKRVTAHTYAAEALCVLGQPEEALKHL------LSSPGSTPLSEEAAVSALQEQRQSESKAVVMTADSFLPPEHFAAQARSALHLNLANVYLLQNNLAAAEECVRAGLAACPTSPDALRSLLFILLRTGNTTAALEALKSRR 262
            SL AG     A  Q++ + +++Q A + L+YV LCL  P  AL   EA L R  G +     + A TYAAEALC+LG+P EA+ HL      L+S  S PL        + ++ Q  +  V    D     +     AR+AL+ NLA +Y  +  LA A+ C+      C  SP  L + + + L+     AAL  L+  R
Sbjct:  633 SLKAGLAAYEAE-QKRKNELIQQSARVGLAYVDLCLGNPARALAHVEASL-RIAG-IGRVNSLLARTYAAEALCLLGRPGEAINHLSVALTELTSSSSDPLPPVPEQGPVPDKEQVAAVPVGKPRD--WQADLTGPGARAALYANLAALYAKKGELAEAQRCIARACQICRESPSVLLAGILVQLKANGEEAALSKLREAR 828
[Close]
BLAST of NO15G01450 vs. NCBI_GenBank
Match: PNR48509.1 (hypothetical protein PHYPA_012986 [Physcomitrella patens])

HSP 1 Score: 79.0 bits (193), Expect = 2.600e-11
Identity = 65/196 (33.16%), Postives = 95/196 (48.47%), Query Frame = 0 
Query:   82 QDDAVVEQVALLTLSYVYLCLQEPVLALRSSEALLSRGPGWMSESKRVTAHTYAAEALCVLGQPEEALKHL---LSSPGSTPLSEEAAVSALQEQRQSESKA-----------VVMTADSFLPPEHFAAQARSALHLNLANVYLLQNNLAAAEECVRAGLAACPTSPDALRSLLFILLRTGNTTAALEALKSRRPL 264
            Q+ A +   AL  L+Y  L +  P+ ALRS+E LL R P   +    +  H YAAEALC L +P+EAL+HL   L+   S P S      +L+ +    S+A           V    D+          AR +L++NLA VY +Q NL  A    +A L   PT+  A+ + +++ L+     +AL  LK  R L
Sbjct:  642 QEAAALRMWALAALAYCQLGVSHPLRALRSAEQLL-RQPS-CARPYLLLGHVYAAEALCQLERPQEALEHLSTCLNESASEPTSSGTEEESLKWKYGDNSEASGDGEDGATYTVGALGDAASVARLTGTSARVSLYINLAAVYAMQGNLQEAHRLAQAALTMAPTNSTAMLAAVYVELKRERMASALALLKQHRHL 835
[Close]
BLAST of NO15G01450 vs. NCBI_GenBank
Match: XP_024385051.1 (CCR4-NOT transcription complex subunit 10-like [Physcomitrella patens])

HSP 1 Score: 79.0 bits (193), Expect = 2.600e-11
Identity = 65/196 (33.16%), Postives = 95/196 (48.47%), Query Frame = 0 
Query:   82 QDDAVVEQVALLTLSYVYLCLQEPVLALRSSEALLSRGPGWMSESKRVTAHTYAAEALCVLGQPEEALKHL---LSSPGSTPLSEEAAVSALQEQRQSESKA-----------VVMTADSFLPPEHFAAQARSALHLNLANVYLLQNNLAAAEECVRAGLAACPTSPDALRSLLFILLRTGNTTAALEALKSRRPL 264
            Q+ A +   AL  L+Y  L +  P+ ALRS+E LL R P   +    +  H YAAEALC L +P+EAL+HL   L+   S P S      +L+ +    S+A           V    D+          AR +L++NLA VY +Q NL  A    +A L   PT+  A+ + +++ L+     +AL  LK  R L
Sbjct:  718 QEAAALRMWALAALAYCQLGVSHPLRALRSAEQLL-RQPS-CARPYLLLGHVYAAEALCQLERPQEALEHLSTCLNESASEPTSSGTEEESLKWKYGDNSEASGDGEDGATYTVGALGDAASVARLTGTSARVSLYINLAAVYAMQGNLQEAHRLAQAALTMAPTNSTAMLAAVYVELKRERMASALALLKQHRHL 911
[Close]
BLAST of NO15G01450 vs. NCBI_GenBank
Match: XP_024396526.1 (CCR4-NOT transcription complex subunit 10-like [Physcomitrella patens] >PNR39600.1 hypothetical protein PHYPA_019879 [Physcomitrella patens])

HSP 1 Score: 77.4 bits (189), Expect = 7.700e-11
Identity = 62/196 (31.63%), Postives = 95/196 (48.47%), Query Frame = 0 
Query:   82 QDDAVVEQVALLTLSYVYLCLQEPVLALRSSEALLSRGPGWMSESKRVTAHTYAAEALCVLGQPEEALKHL---LSSPGSTPLSEEAAVSALQEQRQSESKA-----------VVMTADSFLPPEHFAAQARSALHLNLANVYLLQNNLAAAEECVRAGLAACPTSPDALRSLLFILLRTGNTTAALEALKSRRPL 264
            Q+ A +   AL  LSY  L +  P+ ALRS+E LL +     +    +  H YAAEALC L +P+EAL+HL   L+   + P +       L+ +    S+A           V    D+          AR++L++NLA VY +Q N+  A     + LA  PT+P A+ + +++ L+     +AL  LK  R L
Sbjct:  634 QEVAALRMWALAALSYCQLGVGHPLRALRSAEQLLRQAS--CARPYMLLGHVYAAEALCHLERPQEALEHLSTCLNEATAEPTNAGTEEENLKWKGGDNSEASGDGEDGATFSVGALGDAASVARLTGTSARASLYINLAAVYAMQGNIQEAHRLAHSALAIAPTNPTAMLAAVYVELKLERMESALALLKQHRHL 827
[Close]
BLAST of NO15G01450 vs. NCBI_GenBank
Match: OQS04931.1 (CCR4-NOT transcription complex subunit [Thraustotheca clavata])

HSP 1 Score: 77.0 bits (188), Expect = 1.000e-10
Identity = 62/182 (34.07%), Postives = 89/182 (48.90%), Query Frame = 0 
Query:   87 VEQVALLTLSYVYLCLQEPVLALRSSEALLSRGPGWMSESKRVTAHTYAAEALCVLGQPEEALKHLLSSPGSTPLSEEAAVSALQEQRQSESKAVVMTADSFLPPEHF-AAQARSALHLNLANVYLLQNNLAAAEECVRAGLAACPTSPDALRSLLFILLRTGN--TTAALEALKSRRPLNL 266
            + Q AL+ L+Y YLCL+EP LAL +   LL+  P  M+ +K +   TYAAEAL +L +  EA   L                        ++  +V  AD +    H   A  ++ +H+N A  +LLQ N+  AE+ V   +  C TS  AL  L+++LLR G   T  ALE L  +R   L
Sbjct:  527 IRQKALVNLAYAYLCLKEPNLALATCRELLAL-PTCMNANKYL-GRTYAAEALSLLSRSSEATILL------------------------KTTEMVALADEYAKEAHLDTASVQADVHVNNATAFLLQKNMQMAEQNVALAVRTCQTSRAALEQLVYVLLRKGTMATEVALEELARQRGFEL 682
The following BLAST results are available for this feature:
BLAST of NO15G01450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Position :
0
Zoom :
x 1
100200300400500600700800Expect = 4.30e-70 / Id = 75.25Expect = 1.20e-69 / Id = 74.75Expect = 3.70e-13 / Id = 34.33Expect = 6.30e-13 / Id = 35.20Expect = 4.10e-12 / Id = 32.02Expect = 2.00e-11 / Id = 33.83Expect = 2.60e-11 / Id = 33.16Expect = 2.60e-11 / Id = 33.16Expect = 7.70e-11 / Id = 31.63Expect = 1.00e-10 / Id = 34.07SequenceXP_005853792.1EWM22463.1OQR88054.1XP_012196628.1CBJ25843.1GAQ79297.1PNR48509.1XP_024385051.1XP_024396526.1OQS04931.1
Match NameE-valueIdentityDescription
XP_005853792.14.300e-7075.25CCR4-NOT transcription complex subunit 10 [Nannoch... [more]
EWM22463.11.200e-6974.75ccr4-not transcription complex subunit 10-like pro... [more]
OQR88054.13.700e-1334.33CCR4-NOT transcription complex subunit [Achlya hyp... [more]
XP_012196628.16.300e-1335.20hypothetical protein SPRG_02674 [Saprolegnia paras... [more]
CBJ25843.14.100e-1232.02conserved unknown protein [Ectocarpus siliculosus][more]
GAQ79297.12.000e-1133.83CCR4-NOT transcription complex subunit 10 [Klebsor... [more]
PNR48509.12.600e-1133.16hypothetical protein PHYPA_012986 [Physcomitrella ... [more]
XP_024385051.12.600e-1133.16CCR4-NOT transcription complex subunit 10-like [Ph... [more]
XP_024396526.17.700e-1131.63CCR4-NOT transcription complex subunit 10-like [Ph... [more]
OQS04931.11.000e-1034.07CCR4-NOT transcription complex subunit [Thraustoth... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001462NSK001462Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01450.1NO15G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670471gene_4689Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100011g65gene7995Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01450.1NO15G01450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01450 ID=NO15G01450|Name=NO15G01450|organism=Nannochloropsis oceanica|type=gene|length=831bp
ATGACAACGCTGTTTGGGGGGGCTGGAAGCAGCAAGATGACGATGTCGGA
CGAAGCAGACAGCAGCAGCAGCAGCAGCAGCAGCAGTGGCGGCGCTGGGG
TTCAAAGCACCAACGGGACGGCGGCCACTATATCAGCATCAGCGGTTGCG
GGGGCAGCCGCAAGAGGACTAGCAGTAGCTGCTGCTCCTACTGCTGAATC
ACTGACTGCTGGAAGCGAAGGAGGGCCAGCCTCCCCGCAAGAGCAGGATG
ATGCGGTGGTAGAGCAAGTTGCACTCCTGACACTCTCGTATGTTTACCTT
TGTTTGCAAGAGCCCGTCCTCGCCTTACGATCCTCGGAAGCCCTTCTTTC
CCGCGGGCCTGGGTGGATGAGTGAGAGCAAGCGGGTGACCGCCCACACAT
ACGCGGCAGAGGCTCTGTGTGTATTGGGTCAGCCCGAGGAAGCGCTGAAG
CACTTGCTGTCCAGCCCAGGCTCGACACCTCTCTCCGAAGAAGCAGCAGT
CAGCGCGCTGCAAGAGCAGAGGCAATCAGAAAGTAAGGCGGTCGTTATGA
CGGCGGATAGCTTTTTGCCGCCTGAACACTTCGCGGCACAGGCCCGGAGT
GCTCTTCACCTTAATCTTGCAAACGTCTACCTGCTTCAAAACAACCTGGC
AGCGGCGGAGGAGTGTGTGAGGGCCGGTTTGGCGGCATGTCCGACAAGTC
CCGACGCCTTGAGGAGCTTGCTCTTTATTCTCTTGCGCACCGGCAACACG
ACTGCAGCGCTCGAGGCGCTCAAGTCTCGTCGGCCATTGAATCTGGGAGG
GCCTGCCTCCGCGGCGCAGCAGGAAGGATAG
back to top

protein sequence of NO15G01450.1

>NO15G01450.1-protein ID=NO15G01450.1-protein|Name=NO15G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MTTLFGGAGSSKMTMSDEADSSSSSSSSSGGAGVQSTNGTAATISASAVA
GAAARGLAVAAAPTAESLTAGSEGGPASPQEQDDAVVEQVALLTLSYVYL
CLQEPVLALRSSEALLSRGPGWMSESKRVTAHTYAAEALCVLGQPEEALK
HLLSSPGSTPLSEEAAVSALQEQRQSESKAVVMTADSFLPPEHFAAQARS
ALHLNLANVYLLQNNLAAAEECVRAGLAACPTSPDALRSLLFILLRTGNT
TAALEALKSRRPLNLGGPASAAQQEG*
back to top
Synonyms
Publications