NO15G01420, NO15G01420 (gene) Nannochloropsis oceanica

Overview
NameNO15G01420
Unique NameNO15G01420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2968
Alignment locationchr15:401728..404695 +

Link to JBrowse

Properties
Property NameValue
DescriptionSWAP/Surp
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:401728..404695 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR035967SWAP/Surp_sf
IPR022030PRP21-like
IPR000061Surp
Homology
BLAST of NO15G01420 vs. NCBI_GenBank
Match: EWM22494.1 (SWAP/Surp [Nannochloropsis gaditana])

HSP 1 Score: 613.2 bits (1580), Expect = 1.100e-171
Identity = 413/515 (80.19%), Postives = 441/515 (85.63%), Query Frame = 0
Query:    1 MADAAVEDGTMTGGGALNDADVESEIIQGRSGKVTGIIYPPPDTRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGKGEEPAEKKAKVEDGASALVDE------AASASTTAMSVSAAPTTTVGKASALGPIAKAALDKPEGPPPPLEFYITHPDGLNALDVEVIKLTAQYTAASGRQFLAALAQKEQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDAQRAMVKQGLEKQKILERVVHRWEXXXXXXXXXXXXXXXXXXXXVAYQSVDWHDFVVVETITFAEDELMDVGMPDLAEGEEGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIKVVSSYVPRVAAGGGVVAPQMMLDPVTGREVPIADVGEHMRIQFLDPRWREEQKRALDKKKESALAEGADIAANVRSFAKKRTDIFGTTEEQERQILAGQEQFRVRQEENQRMIWQGG 510
            MA+A V++   T G AL+DADVE+EIIQGRSGKVTGIIYPPPD RAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGKGE PAEKKAK+ + +     E       A    T  +VSAAPTTTV KAS LGPIAKAAL KPE PPPP EFYI+HPDGLN LDVE+IKLTAQYTAASGRQFLAALAQ+EQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTD+QRAMV+QGLE QK+L        XXXXXXXXXXXXXXXXXXXX  YQSVDWHDFVVVETITFAEDEL+DVGMP++  G    E               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IKVVSSY PRVAAGGG   P++MLDPVTG+EVPIADVGEHMRIQFLDPRWR+EQ+RAL+K+KESALAEG DIAANVRSFAKKRTDIFGT+EE+ERQILA QE+FR RQEENQRMIWQGG
Sbjct:    1 MAEAPVKEEAST-GVALDDADVENEIIQGRSGKVTGIIYPPPDIRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGKGEGPAEKKAKIAEVSPPAAGETRDGKAVADTGETPTAVSAAPTTTVSKASVLGPIAKAALHKPEAPPPPQEFYISHPDGLNPLDVEIIKLTAQYTAASGRQFLAALAQREQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDSQRAMVRQGLETQKVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQSVDWHDFVVVETITFAEDELLDVGMPEVGGGRANGE------------VSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKVVSSYKPRVAAGGGAARPEVMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEEERQILADQERFRARQEENQRMIWQGG 502          
BLAST of NO15G01420 vs. NCBI_GenBank
Match: CBJ32127.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 335.1 bits (858), Expect = 5.800e-88
Identity = 272/495 (54.95%), Postives = 336/495 (67.88%), Query Frame = 0
Query:   28 QGRSGKVTGIIYPPPDTRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGKGEEPAEKKAKVEDGASALVDEAASASTTAMSV---------SAAPTTTVGKASALGPIAKA--ALDKPEGPPPPLEFYITHPDGLNALDVEVIKLTAQYTAASGRQFLAALAQKEQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDAQRAMVKQGLEKQKILERVVHRWEXXXXXXXXXXXXXXXXXXXXVAYQSVDWHDFVVVETITFAEDELMDVGMPDLAEGEEGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIKVVSSYVPRVAAGGGVVAPQMMLDPVTGREVPIADVGEHMRIQFLDPRWREEQKRALDKKKESALAEGADIAANVRSFAKKRTDIFGTTEEQERQILAGQEQFRVRQEENQRMIWQGGPA 512
            Q   GKV GIIYPPPD RA+VDKTA++VA+NGKSFE+RI +SEEGKS+KFNFM+P DPY AYYE +IR FEE  G+ P                                      AAP  +V + + + PIAKA  +L+K    P   EF + HP GL ALDV++IKLTAQ+TA  GR FLA LA++E RN  F+FLK +H LFSYFT+LVDAY KVLQPT  QRA V+ G ++Q+ LER VHRWE                    +A++S+DWHDFVVVETI F +DEL++  +  L   E+G E    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX I VV+ Y P VA G     P M++DP+TG  V  +++ +HMRIQ +DP+WREEQ RA  K+K++ALAEG  IAA+++S A+KR DIFG+ E++E+Q+L      + R+EE  R++W G  A
Sbjct:   50 QPYQGKVKGIIYPPPDIRAIVDKTARFVAKNGKSFEERIQASEEGKSAKFNFMRPHDPYYAYYEFKIRDFEE-NGDAPRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKAAP-ASVSRKAVMAPIAKAVKSLNKAT-EPRAFEFSVGHPTGLTALDVDLIKLTAQFTAVGGRNFLAELAKREARNEQFQFLKHTHALFSYFTSLVDAYTKVLQPTATQRAYVESGRDRQQTLERCVHRWEFDREKKAKKQATLAAADADRIAFRSIDWHDFVVVETIEFPDDELVE-PLEGLDIAEDGIE-LPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIHVVTDYKPGVATGSATALPTMVIDPITGATVAASELSDHMRIQLMDPKWREEQARAAAKQKDTALAEGESIAASLKSLARKRGDIFGSAEDEEQQLLNESNARKKRKEEVTRVLWDGNIA 539          
BLAST of NO15G01420 vs. NCBI_GenBank
Match: XP_005853795.1 (splicing factor 3A subunit 1 [Nannochloropsis gaditana CCMP526] >EKU22568.1 splicing factor 3A subunit 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 274.6 bits (701), Expect = 9.400e-70
Identity = 231/397 (58.19%), Postives = 259/397 (65.24%), Query Frame = 0
Query:  391 IKVVSSYVPRVAAGGGVVAPQMMLDPVTGREVPIADVGEHMRIQFLDPRWREEQKRALDKKKESALAEGADIAANVRSFAKKRTDIFGTTEEQERQILAGQEQFRVRQEENQRMIWQGGPAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLSESAYAAAHPGVVSVSVKVPVDDSNPSWNLAGQLLVLEVGSVMRTVKALKEQIAPMVGDMPLNKMQLRVGGEGGGGGVFLKDPQTLASYNLGAPGSGSVVELVTRSRGGRK 788
            IKVVSSY PRVAAGGG   P++MLDPVTG+EVPIADVGEHMRIQFLDPRWR+EQ+RAL+K+KESALAEG DIAANVRSFAKKRTDIFGT+EE+ERQILA QE+FR RQEENQRMIWQGG                                                                                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                         LLSESAYA+A+ G  S+S++ P D+S  +WNL GQL+ LE+GSVM TV+ +KEQ++P++G MP NKMQLR   +    GVFLKD QTLASYNLGA GS +V+ELVTRSRGGRK
Sbjct:   48 IKVVSSYKPRVAAGGGAARPEVMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEEERQILADQERFRARQEENQRMIWQGGTGG---------QGTLGPGRAPGPSPVASSEPRPGFPQQTNSFAQPPAPAPSQARGPVPPVSSSLLKNTLAGGAGASSFPAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGASNLVVGEAEKEKVSEEEQKPTLLSESAYASANTGAGSISIQAPQDESAATWNLKGQLVKLEIGSVMSTVREVKEQLSPLLGGMPPNKMQLRNAEQ----GVFLKDAQTLASYNLGAAGSSTVLELVTRSRGGRK 431          
BLAST of NO15G01420 vs. NCBI_GenBank
Match: CCI42871.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 247.7 bits (631), Expect = 1.200e-61
Identity = 186/488 (38.11%), Postives = 252/488 (51.64%), Query Frame = 0
Query:   32 GKVTGIIYPPPDTRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGKGEEPAEKKA-------------------KVEDGASALVDEAASASTTAMSVSAAPTTTVGKASALGPIAKAALDKPEGPPPPLEFYITHPDGLNALDVEVIKLTAQYTAASGRQFLAALAQKEQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDAQRAMVKQGLEKQKILERVVHRWEXXXXXXXXXXXXXXXXXXXXVAYQSVDWHDFVVVETITFAEDELMDVGMPDLAEGEEGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIKVVSSYVPRVAAGGGVVAPQMMLDPVTGREVPIADVGEHMRIQFLDPRWREEQKRALDKKKESALAEGADIAANVRSFAKKRTDIFGTTEEQERQILAGQEQFRVRQEE 501
            GKVTGIIYPPPD RAVVDKTAQ+VARNG++FE+R+  + E  S+KF+F+KP DPY+ YYE ++ +F E        KK+                                 S +       A  T T         +++   +K   PPPP  + I HP  L+ALD E++ LTAQYTA SG+ FLA LA +EQRNP F+FLKP+H LF+YFT LV++Y +VL  +  Q   +++G+ + K+L+R VHR E                    +A   +DWHDFVVVETI F ++E       D A+ E  A                                                  XXXXXXXXXXXXX     IKVV  YVP V        PQ M+  V G+ +  AD  EHMRI  ++P+WREE +R L+K+K+++ A G+ IA ++R FA KR DIF ++ E+E ++L   E  R R+E+
Sbjct:   22 GKVTGIIYPPPDIRAVVDKTAQFVARNGRNFERRL--AGETSSTKFSFLKPSDPYHTYYEFKVNEFTEKDFVIEENKKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKNEVIFEKKAVETLT-------AKVSRKLNEKTVEPPPPELYKIQHPT-LSALDQEIMYLTAQYTAHSGKSFLAGLATREQRNPQFDFLKPTHALFAYFTALVESYAQVLSKSKEQMHRIEEGMSRMKVLDRCVHRMEWMRMEHEKQAKEVAESDAERLALAQIDWHDFVVVETIRFNDEEDAQDEKADDAKDELPAS-------------------------------------------------XXXXXXXXXXXXXAEKPNIKVVDDYVPLVGKHAAKSVPQSMM-TVDGKTISSADANEHMRILLMNPKWREESQRHLEKQKDTSFAAGSAIADSLRRFATKRADIFSSSAEEEAKLL---ENERKREEK 446          
BLAST of NO15G01420 vs. NCBI_GenBank
Match: CCA26819.1 (splicing factor 3 subunit putative [Albugo laibachii Nc14])

HSP 1 Score: 246.1 bits (627), Expect = 3.600e-61
Identity = 182/487 (37.37%), Postives = 255/487 (52.36%), Query Frame = 0
Query:   32 GKVTGIIYPPPDTRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGK-------------GEEPAEKKAKVEDGASALVDEAASASTTAMSVSAAPTTTVGKASALGPIAKAALDKPEGPPPPLEFYITHPDGLNALDVEVIKLTAQYTAASGRQFLAALAQKEQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDAQRAMVKQGLEKQKILERVVHRWEXXXXXXXXXXXXXXXXXXXXVAYQSVDWHDFVVVETITFAEDELMDVGMPDLAEGEEGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIKVVSSYVPRVAAGGGVVAPQMMLDPVTGREVPIADVGEHMRIQFLDPRWREEQKRALDKKKESALAEGADIAANVRSFAKKRTDIFGTTEEQERQILAGQEQFRVRQEE-NQRM 505
            GKVTG+IYPPPD RAVVDKTAQ+VARNG++FE+R+  + E  S+KF+F+KP DPY+AYYE ++ +F E +                                      +       A  T T         +++   +K   PPPP  + I HP  L+ALD E++ LTAQYTA SG+ FLA LA +EQRNP F+FLKP+H LF+YFT LV++Y +VL  +  Q   +++G+ + K+L+R VHR E                    +A   +DWHDFVVVETI F ++E +     + A+ E  A                                                   XXXXXXXXXXXX    +IKVV  YVP V        PQ M+  V G+ +  AD  EHMRI  ++P+WREE +R L+K+K+++ A G+ IA ++R FA KR DIF ++ E+E ++L  +++   R+E+ NQ M
Sbjct:  222 GKVTGLIYPPPDIRAVVDKTAQFVARNGRNFERRL--AGETSSTKFSFLKPSDPYHAYYEFKVNEFTEKEFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQVIFEKKAVETLT-------AKVSRKLNEKTIEPPPPELYKIQHPT-LSALDQEIMYLTAQYTAHSGKSFLAGLATREQRNPQFDFLKPTHALFAYFTALVESYAQVLSKSKDQMHRIEEGMSRMKVLDRCVHRMEWMRMEHEKQAKEVAESDAERLALAQIDWHDFVVVETIRFNDEEDVQDEKTEDAKEERPAS-------------------------------------------------DXXXXXXXXXXXXIEKPDIKVVDDYVPLVGKNASKSVPQSMM-TVDGKTISSADANEHMRILLMNPKWREESQRHLEKQKDTSFAAGSAIADSLRRFATKRADIFSSSAEEEARLLENEKK---REEKWNQSM 645          
BLAST of NO15G01420 vs. NCBI_GenBank
Match: OQR97222.1 (splicing factor 3 subunit [Achlya hypogyna])

HSP 1 Score: 239.6 bits (610), Expect = 3.300e-59
Identity = 188/481 (39.09%), Postives = 255/481 (53.01%), Query Frame = 0
Query:   18 NDADVESEIIQGRSGKVTGIIYPPPDTRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGKGEEPAEKKAKVEDGASALVDEAASASTTAMSVSAAP-TTTVGKASALGPIAKAALDKPEGPPPPLEFYITHPDGLNALDVEVIKLTAQYTAASGRQFLAALAQKEQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDAQRA--------MVKQGLEKQKILERVVHRWEXXXXXXXXXXXXXXXXXXXXVAYQSVDWHDFVVVETITFAEDELMDVGMPDLAEGEEGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIKVVSSYVPRVAAGGGVVAPQMMLDPVTGREVPIADVGEHMRIQFLDPRWREEQKRALDKKKESALAEGADIAANVRSFAKKRTDIFGTTEEQERQILA 490
            ++ADV +  + GR   VTGIIYPPPD RAVVDKTAQ+VA+NG++FE++I  + E  S+KF+F+KPGDPYNAYYEH++ +FE    E                             V   P    VGKA     +   +    + PP   +F   HP  L A D E++ LTAQYTA  G+ FL+ LA +EQRNP F+F+ P H LF+YFT LV++Y K+L    AQR          +++G+++ ++L+R VH+ E                    +AY  +DWHDFV+VETI F + +L+        E + G                                              XXXXXXXXXXXXXXXXXXXX  EIKVV +YVP+ A   G   P + +  V G+ VP  D  EHMRI  + P++REE +R L+K+K+S  A GA IA N + FA KR+DIF ++ E E ++ A
Sbjct:    4 SEADVATGAVHGR---VTGIIYPPPDIRAVVDKTAQFVAKNGRAFERKI--AGEVISAKFSFLKPGDPYNAYYEHKVSEFENALNEPEKLPXXXXXXXXXXXXXXXXXXXXXXXXVERKPIEAVVGKA-----LRNLSDSDKKRPPAEEQFKQKHPT-LTAQDQEIMYLTAQYTAVGGKAFLSGLATREQRNPQFDFINPVHPLFAYFTVLVESYAKIL-TAKAQRGKKANPLLERLEEGVDRMRVLDRCVHKLEFMRLEAESKQKEEAENDAERLAYMQIDWHDFVIVETIVFDDSDLIADAPNPYLEDDPG-------------------------------------------QTAXXXXXXXXXXXXXXXXXXXXPSEIKVVENYVPKAATSTG---PSVSMLTVDGQAVPTTDANEHMRILLMAPKYREETQRHLNKQKDSPFAPGAAIADNFKRFAAKRSDIFSSSAEDEAKLTA 426          
BLAST of NO15G01420 vs. NCBI_GenBank
Match: OQR93692.1 (splicing factor 3 subunit [Thraustotheca clavata])

HSP 1 Score: 238.4 bits (607), Expect = 7.400e-59
Identity = 188/455 (41.32%), Postives = 254/455 (55.82%), Query Frame = 0
Query:   32 GKVTGIIYPPPDTRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEG--KGEEPAEKKAKVEDGASALVDEAASASTTAMSVSAAPTTTVGKASALGPIAKAALDKPEGPPPPLEFYITHPDGLNALDVEVIKLTAQYTAASGRQFLAALAQKEQRNPLFEFLKPSHILFSYFTTLVDAYIKVL-------QPTDAQRAMVKQGLEKQKILERVVHRWEXXXXXXXXXXXXXXXXXXXXVAYQSVDWHDFVVVETITFAEDELMDVGMPDLAEGEEGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIKVVSSYVPRVAAGGGVVAPQMMLDPVTGREVPIADVGEHMRIQFLDPRWREEQKRALDKKKESALAEGADIAANVRSFAKKRTDIF 478
            G+VTGIIYPPPD RAVVDKTAQ+VA+NG++FE++I  + E  S+KF+F+K  DPY+AYYEH++ +FE+G  + E+PA                          + AA    VGK+         +    + PPP  +F   HP  L A D E++ LTAQYTA  G+ FL+ LA +EQRNP F+F+ P H LF+YFT LV++Y K+L       + ++     ++ G E+ ++L+R VH+ E                    +AY  +DWHDFVVVETITF + +L     P   E E+ A                                          XXXXXXXXXXXXXXXXXXXXXXXX EIKVV +YVP+V++G  V  P + +D   G+ +  A+  EHMRI  +DP++REE +R L+K+K +  A GADIA N + FA KRTDIF
Sbjct:   14 GRVTGIIYPPPDIRAVVDKTAQFVAKNGRAFERKI--AGEVISAKFSFLKDSDPYHAYYEHKVDEFEKGLNEPEKPAXXXXXXXXXXXXXXXXXXXXXXXXXXIEAA----VGKS-----FRNLSESDKKKPPPEEQFKQKHPT-LTAQDQEIMYLTAQYTAVGGKAFLSGLATREQRNPQFDFINPVHPLFAYFTFLVESYAKILTAKAQYGKKSNPLIERLEDGFERMRVLDRCVHKLEYMRLEAEAKQKEEAENDAERLAYMQIDWHDFVVVETITFDDSDLATDIAPYYIEEEQPA------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXSEIKVVENYVPKVSSGPSVSVPMLSVD---GQAISTANANEHMRILLMDPKYREETQRHLNKQKITPFAPGADIADNFKRFAAKRTDIF 411          
BLAST of NO15G01420 vs. NCBI_GenBank
Match: XP_002905309.1 (splicing factor 3 subunit, putative [Phytophthora infestans T30-4] >EEY68150.1 splicing factor 3 subunit, putative [Phytophthora infestans T30-4])

HSP 1 Score: 235.3 bits (599), Expect = 6.300e-58
Identity = 197/447 (44.07%), Postives = 249/447 (55.70%), Query Frame = 0
Query:   32 GKVTGIIYPPPDTRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGKGEE-PAEKKAKVEDGASALVDEAASASTTAMSVSAAPTTTVGKASALGPIAKAALDKPEGPPPPLEFYITHPDGLNALDVEVIKLTAQYTAASGRQFLAALAQKEQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDAQRAMVKQGLEKQKILERVVHRWEXXXXXXXXXXXXXXXXXXXXVAYQSVDWHDFVVVETITFAEDELMDVGMPDLAEGEEGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIKVVSSYVPRVAAGGGVVAPQMMLDPVTGREVPIADVGEHMRIQFLDPRWREEQKRALDKKKESALAEGADIAANVRSFAKKRTDIF 478
            G+VTGIIYPPPD RAVVDKTAQ+VA NG++FE RI+   E  S+KF+F++  DPY+AYYEH++ +F   K +  PA +  + E  A    +     +    +V                +AK    +   PPP   F I HP  L+ALD E++ LTAQYTA SG  FL+ LA +EQRNP F+FLKP+H LF+YFT LV++Y  VL   DAQ   ++ G+E+ K+L+R VHR E                     A   VDWHDFV+VETI F                                                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   VV  YVP+  AG      Q  L  V G+ +  A+  EHMRI  ++P+WREE +R L+K+KES+ A G+ IA ++R FA KR DIF
Sbjct:   14 GRVTGIIYPPPDIRAVVDKTAQFVANNGRAFESRIVG--ERVSAKFSFLRESDPYHAYYEHKVSEFTVKKEDPLPAPEPQQPEHTAEGQQETTQEIAKAVETVGDVVVEKKAVQDVTAQVAKNIRGRELEPPPEEIFIIKHPT-LSALDQEIMYLTAQYTALSGSSFLSGLATREQRNPQFDFLKPTHPLFAYFTALVESYTLVLAKQDAQMKRIEDGMERMKVLDRCVHRMEWQRTEQEREDKEAAEGDAERRALAQVDWHDFVIVETINF---------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVEDYVPQATAG----TTQQPLLSVDGKTLSSAEANEHMRILLMNPKWREETQRHLEKQKESSYAAGSAIADSLRRFATKRADIF 402          
BLAST of NO15G01420 vs. NCBI_GenBank
Match: XP_024584279.1 (probable splicing factor 3a subunit 1 [Plasmopara halstedii] >CEG47910.1 probable splicing factor 3a subunit 1 [Plasmopara halstedii])

HSP 1 Score: 235.0 bits (598), Expect = 8.200e-58
Identity = 206/457 (45.08%), Postives = 266/457 (58.21%), Query Frame = 0
Query:   32 GKVTGIIYPPPDTRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGKGEEPAEKKAKVEDGASA-----LVDEAASASTTAMSVSAAPT---TTVGKASALGPIAKAAL---DKPEGPPPPLEFYITHPDGLNALDVEVIKLTAQYTAASGRQFLAALAQKEQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDAQRAMVKQGLEKQKILERVVHRWEXXXXXXXXXXXXXXXXXXXXVAYQSVDWHDFVVVETITFAEDELMDVGMPDLAEGEEGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIKVVSSYVPRVAAGGGVVAPQMMLDPVTGREVPIADVGEHMRIQFLDPRWREEQKRALDKKKESALAEGADIAANVRSFAKKRTDIF 478
            G+VTGIIYPPPD RAVVDKTAQ+VA NG++FE RI+   E  S+KF+F++  DPY+AYYEH++           +E  AK E+G S       V+ +     T M V AA T     V K +     A+AA+   DK   PPP  +F I HP  L+ALD E++ LTAQYTA SG  FL+ LA +EQRNP F+FLKP+H LF+YFT LV++Y  V+   + Q   +++G+++ K+L+R V+R E                     A   +DWHDFVVVETI F                                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IK+V  +VP+V    G    Q +L  V G+ +  A+  EHMRI  ++P+WREE +R L+K+KES+ A G+ IA ++R FA KR+DIF
Sbjct:   14 GRVTGIIYPPPDIRAVVDKTAQFVASNGRAFESRIVG--ERMSAKFSFLRESDPYHAYYEHKV-----------SELIAKKEEGVSVESEQQQVNGSEEQVKTQMIVKAAETAGDVVVEKKAVQDVAAQAAIKLKDKELEPPPDEKFIIKHPT-LSALDQEIMYLTAQYTALSGSSFLSGLATREQRNPQFDFLKPTHPLFAYFTALVESYTLVMAKQEMQMKRIEEGMDRMKVLDRCVYRMEWQRTEQERKDREVAESDAERRALAQIDWHDFVVVETINF------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKIVEDHVPQVT---GATTQQPLLS-VDGKTISSAEANEHMRILLMNPKWREETQRHLEKQKESSYAPGSAIADSLRRFATKRSDIF 404          
BLAST of NO15G01420 vs. NCBI_GenBank
Match: XP_008616178.1 (hypothetical protein SDRG_11902 [Saprolegnia diclina VS20] >EQC30325.1 hypothetical protein SDRG_11902 [Saprolegnia diclina VS20])

HSP 1 Score: 233.8 bits (595), Expect = 1.800e-57
Identity = 186/482 (38.59%), Postives = 254/482 (52.70%), Query Frame = 0
Query:   18 NDADVESEIIQGRSGKVTGIIYPPPDTRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGKGEEPAEKKAKVEDGASALVDEAASASTTAMSVSAAPT-TTVGKASALGPIAKAALDKPEGPPPPLEFYITHPDGLNALDVEVIKLTAQYTAASGRQFLAALAQKEQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDAQRA--------MVKQGLEKQKILERVVHRWEXXXXXXXXXXXXXXXXXXXXVAYQSVDWHDFVVVETITFAEDELMDVGM-PDLAEGEEGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIKVVSSYVPRVAAGGGVVAPQMMLDPVTGREVPIADVGEHMRIQFLDPRWREEQKRALDKKKESALAEGADIAANVRSFAKKRTDIFGTTEEQERQILA 490
            ++ DV++ ++ GR   VTGIIYPPPD RAVVDKTAQ+VA+NG++FE++I  + E  S+KF+F+K GDPY+AYYEH++  FE    E                             V   P    VGKA     +   +    + PP   +F   HP  L A D E++ LTAQ+TA  G+ FL+ LA +EQRNP F+F+ P H LF+YFT LV++Y K+L    AQR          + +G+++  +L+R VH+ E                    +AY  +DWHDFV+VETI F + +L+  G  P   E +   +                                            XXXXXXXXXXXXXXXXXXXX  E+KVV +YVP+ AA  G     M +D   G  V  AD  EHMRI  + P++REE +R L+K+KES  A GA IA N + FA KR+DIF ++ E+E ++ A
Sbjct:    4 SEVDVDTGVVHGR---VTGIIYPPPDIRAVVDKTAQFVAKNGRAFERKI--AGEVISAKFSFLKTGDPYHAYYEHKVEDFERQLNEPEKPXXXXXXXXXXXXXXXXXXXXVAVEVVERKPVEAVVGKA-----LRNLSESDKKRPPAEEQFKQKHPT-LTAQDQEIMYLTAQFTAVGGKAFLSGLATREQRNPQFDFINPVHPLFAYFTFLVESYAKIL-TAKAQRGKKANPLLERLDEGVDRMSVLDRCVHKLEFMRIENEAKQKEEAESDAERLAYMQIDWHDFVIVETIVFDDSDLVTDGTNPYYLEDDPTTQ---------------------------------------ATSAPXXXXXXXXXXXXXXXXXXXXPSELKVVENYVPKAAASSGASVNMMSVD---GHAVSTADANEHMRILLMAPKYREETQRHLNKQKESPFAPGAAIADNFKRFASKRSDIFSSSAEEEAKLTA 431          
The following BLAST results are available for this feature:
BLAST of NO15G01420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22494.11.100e-17180.19SWAP/Surp [Nannochloropsis gaditana][more]
CBJ32127.15.800e-8854.95conserved unknown protein [Ectocarpus siliculosus][more]
XP_005853795.19.400e-7058.19splicing factor 3A subunit 1 [Nannochloropsis gadi... [more]
CCI42871.11.200e-6138.11unnamed protein product [Albugo candida][more]
CCA26819.13.600e-6137.37splicing factor 3 subunit putative [Albugo laibach... [more]
OQR97222.13.300e-5939.09splicing factor 3 subunit [Achlya hypogyna][more]
OQR93692.17.400e-5941.32splicing factor 3 subunit [Thraustotheca clavata][more]
XP_002905309.16.300e-5844.07splicing factor 3 subunit, putative [Phytophthora ... [more]
XP_024584279.18.200e-5845.08probable splicing factor 3a subunit 1 [Plasmopara ... [more]
XP_008616178.11.800e-5738.59hypothetical protein SDRG_11902 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001465NSK001465Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01420.1NO15G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554597gene_4686Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100011g62gene7992Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01420.1NO15G01420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01420 ID=NO15G01420|Name=NO15G01420|organism=Nannochloropsis oceanica|type=gene|length=2968bp
GAAGTCAGCAGGCGCCTGCTGGGGCGGGGCGGGGCGGGGCGGGACGAGAC
GGGCCGTCATCAAAGAAGCTGGCGTTGAGATAGTCACGGCACCCCATCTT
TCTTATAATCCAGCACAGTCTCTTCCCAATCGTGCACTGTGCTGATTGCC
AGATATGTCCGAAAGGGCCGCATCCTCCCAATATCCGTTGCTCCAGCATC
ATCAGCGCTATGCTTTCGCCTCCCCACTTCTTCCATGGGACACCCACCAT
GCACCCACCTCACCCACATCCAACAACAACAGGGCGTGCGAGACAAGAAT
TTCCCACGCACGTTGTCTGACTGAAGGTCTTGTTCTGACCTTGATTCGAT
TGTCAAGATATTTAGTGGAGAGCGCATCACCCATCCACCCAACCACCTTC
CATCTAATCAACCATGGCGGACGCAGCGGTCGAAGACGGGACTATGACAG
GTGGCGGGGCCTTGAACGATGCCGACGTAGAGAGTGAGATCATCCAGGGG
CGATCCGGCAAGGTAACGGGAATCATATATCCGCCGCCCGACACTCGCGC
AGTGGTGGATAAGACGGCGCAGTGGGTGGCCCGCAATGGCAAAAGCTTCG
AGCAACGCATCCTGAGTAGCGAGGAGGGGAAGAGCTCCAAATTCAACTTT
ATGAAGCCCGGGGATCCATACAATGCTTACTACGAGCACAGGATTCGGCA
GTTTGAGGAGGGCAAGGGGGAGGAGCCCGCGGAGAAAAAAGCCAAGGTGG
AGGATGGCGCATCAGCACTTGTGGACGAGGCCGCCTCCGCTTCTACCACG
GCGATGAGCGTCAGCGCCGCGCCTACTACGACGGTAGGCAAGGCGTCGGC
GCTAGGCCCGATTGCCAAGGCAGCGTTGGATAAACCCGAGGGGCCGCCAC
CACCTCTGGAATTTTACATCACGCACCCGGATGGTCTAAATGCATTGGAT
GTTGAAGTGATCAAATTGACGGCTCAGTATACAGCGGCAAGTGGCCGGCA
ATTTTTGGCGGCCTTGGCACAGAAGGAGCAACGGAACCCTCTGTTTGAGT
TTTTGAAGCCATCCCATATATTATTTAGTTATTTTACCACCTTGGTGGAT
GCGTATATTAAGGTCCTGCAGCCCACGGACGCACAGAGGGCAATGGTCAA
GCAAGGCTTGGAGAAACAGAAGATTCTTGAAAGGGTGGTGCATCGATGGG
AGCATGAGAAGAGCGAGGAGAGCCGGAAGCAGCAGCAACAGCAGGAGCAG
GAGGCGGAACGGGTGGCGTATCAGAGCGTGGATTGGCATGATTTTGTTGT
GGTCGAAACAATCACATTTGCCGAAGACGAGCTCATGGACGTGGGCATGC
CTGATCTTGCTGAAGGAGAGGAGGGAGCGGAGGAAGCAGGAGGAGGAGGA
GGAGAGGAAGATATGGAGTTGGAGGAAGAGGATCAGGACATGAAGGAAGT
GGTGGCATTTCCTCCTCCTCCTCCACCTCGCCCGGCTGTTCCGCCTCCAC
CTCCGCCTCGCCCCCCAGCGGCAGAAATGGCGCAGAGAGAAGAGGAGGAA
GAGGACATGGATATGGATTTGGACGAGGGGGAGATCAAGGTGGTGTCCTC
TTATGTGCCTCGAGTAGCCGCTGGGGGAGGGGTTGTGGCACCTCAGATGA
TGCTCGATCCCGTCACGGGAAGAGAGGTCCCTATTGCCGACGTGGGCGAG
CACATGCGTATTCAGTTTTTGGACCCTCGCTGGCGGGAGGAACAGAAACG
GGCGCTGGATAAAAAGAAAGAGTCGGCGTTGGCAGAGGGGGCGGACATTG
CTGCCAATGTGCGAAGTTTTGCCAAGAAAAGGACGGACATCTTCGGGACG
ACCGAGGAGCAGGAGCGGCAGATTTTGGCGGGACAAGAGCAGTTTAGGGT
GAGGCAGGAGGAGAACCAGAGGATGATTTGGCAGGGCGGTCCCGCGGCGG
GTGCTGGGGGAGACAGAGGAGGGATGGGTGGACCGGGGGTTGCCCCGCGA
GGACCTCCTCCTCCCTCCGTCCCGCCTTCGCATCAAGCTAACAGCCTTGG
TCGGCCTCAGCCTCCGCCGATGTCTGCTGCCGCCCCCCCCCCTCCTGCTC
GTGGACCACCCCAGCCTGTTCCTCCTTCTAGCCTGGTCAATAATACGCTG
GGTGGAGGAGGAGCAACATTCCGCCCGCTCGCTCCTGGTCCTCCTGGCCC
CCCACCTGGGCCGCCGCCTCCCTCTCTTGGACCAACACCGATGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGTCGCTGCCTCCGCGGATGGCGACGGAGGAAGAGGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGCGAAAGAGGAGGCGAAGGAGGAGGCGAAGGAG
GAGGCGGAGGAGGAGGAGGAGGAAAAGGGCCTGCCTTGTTGTCGGAGTCG
GCTTATGCGGCGGCGCATCCTGGGGTTGTGAGTGTGAGTGTCAAGGTGCC
GGTGGATGATAGCAATCCCAGCTGGAACTTGGCGGGGCAACTGCTGGTAC
TGGAGGTGGGGAGCGTCATGCGGACGGTTAAAGCGTTGAAGGAGCAGATT
GCGCCGATGGTGGGGGATATGCCGCTGAACAAAATGCAGCTGCGGGTGGG
GGGGGAGGGGGGAGGGGGAGGTGTTTTCTTGAAGGATCCCCAGACGTTGG
CGAGTTATAATTTGGGGGCGCCGGGAAGCGGGTCGGTGGTTGAGTTGGTA
ACCAGGTCGAGAGGTGGGAGGAAGTAGAAAGGGAGGCGGGAGAGATAACG
ATAACGATGATGGGTGAGTGTGTGCGTGTGTCAACGGCCCCCCAAACGGA
GAAAAACTTACGAGACACTCCAAATCGAAGAACGGTCCGAACCGTAAGCC
GATCTTGGCATCAAGCTAAAAACACCCAAAATGGAACAAAAGCAAAATAA
AAGATGAGGATTTCAGAA
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protein sequence of NO15G01420.1

>NO15G01420.1-protein ID=NO15G01420.1-protein|Name=NO15G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=788bp
MADAAVEDGTMTGGGALNDADVESEIIQGRSGKVTGIIYPPPDTRAVVDK
TAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEG
KGEEPAEKKAKVEDGASALVDEAASASTTAMSVSAAPTTTVGKASALGPI
AKAALDKPEGPPPPLEFYITHPDGLNALDVEVIKLTAQYTAASGRQFLAA
LAQKEQRNPLFEFLKPSHILFSYFTTLVDAYIKVLQPTDAQRAMVKQGLE
KQKILERVVHRWEHEKSEESRKQQQQQEQEAERVAYQSVDWHDFVVVETI
TFAEDELMDVGMPDLAEGEEGAEEAGGGGGEEDMELEEEDQDMKEVVAFP
PPPPPRPAVPPPPPPRPPAAEMAQREEEEEDMDMDLDEGEIKVVSSYVPR
VAAGGGVVAPQMMLDPVTGREVPIADVGEHMRIQFLDPRWREEQKRALDK
KKESALAEGADIAANVRSFAKKRTDIFGTTEEQERQILAGQEQFRVRQEE
NQRMIWQGGPAAGAGGDRGGMGGPGVAPRGPPPPSVPPSHQANSLGRPQP
PPMSAAAPPPPARGPPQPVPPSSLVNNTLGGGGATFRPLAPGPPGPPPGP
PPPSLGPTPMQQQQQQQQQQQQQQQQQQQQSLPPRMATEEEGGGGGGGGG
GGERGGEGGGEGGGGGGGGGKGPALLSESAYAAAHPGVVSVSVKVPVDDS
NPSWNLAGQLLVLEVGSVMRTVKALKEQIAPMVGDMPLNKMQLRVGGEGG
GGGVFLKDPQTLASYNLGAPGSGSVVELVTRSRGGRK*
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Synonyms
Publications