NO15G01320, NO15G01320 (gene) Nannochloropsis oceanica

Overview
NameNO15G01320
Unique NameNO15G01320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1679
Alignment locationchr15:370329..372007 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:370329..372007 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027951DUF4477
Homology
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BLAST of NO15G01320 vs. NCBI_GenBank
Match: EWM22481.1 (hypothetical protein Naga_100011g53 [Nannochloropsis gaditana])

HSP 1 Score: 159.5 bits (402), Expect = 2.800e-35
Identity = 94/194 (48.45%), Postives = 125/194 (64.43%), Query Frame = 0 
Query:   66 HQTMQEPSSTVGGEVRALWSTETTLLESLMYRNKNQHGRAGYWKRLQEVKRRTKELDVPGLLELLATVRHDLSVGMRGMQPQRQQTKTNAQALVARRCAAVGMAIQQCCAALKACTGAAELLVREVAQGYFLNLLVVFLAMLGRLSTLLRHV-------GTLAFGLYQALEGRIGKAGKEGGREQGIRPRLSMQ 253
            + T Q PS  V  ++ +LW+ ET LL SLMYRNKNQHGR GYWKRL+EV+RRT+ELDVP LL LL   R  L +     Q ++++ +     + A R AA+  AI QCC+A+ + T AAELLV+E+AQGYFLNLL++FLA+LGR  TLLRH+          +F    +LEG  GK G++ G    +  R  M+
Sbjct:    6 YSTTQGPSEEV--DLLSLWTLETNLLTSLMYRNKNQHGRTGYWKRLEEVRRRTEELDVPSLLHLLVEERQHLFMVEGSTQTRKEKPRRQLHQVPATRSAALSTAILQCCSAMTSITAAAELLVQEIAQGYFLNLLILFLAILGRFRTLLRHLCVQIVASRDASFLAEDSLEGWEGKDGEKSGERHQLFARKVMR 197
The following BLAST results are available for this feature:
BLAST of NO15G01320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22481.12.800e-3548.45hypothetical protein Naga_100011g53 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001474NSK001474Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01320.1NO15G01320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629925gene_4676Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100011g53gene7983Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01320.1NO15G01320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01320 ID=NO15G01320|Name=NO15G01320|organism=Nannochloropsis oceanica|type=gene|length=1679bp
TGCGACTCTGGATTTTTTACCTGTGCGTGTGGTGAGAGTGTGGATGGTAG
AGTGATCAAATGAGGCAGGGCAGCAAAGGCGGCTTCATTTCCGCACGACA
GAAAGCCTCCCCGACGATCCTCTTTCTCTTTGCCCAGCTTATAATGCATC
TCCTGTGGGAGTTAACGCCAAAGCACGCACACACATTCGCACGACAGGCC
TCTGGCCACGTGGTAGATGTCCAGCAGCAACGTCTCTGTCTGCCGAGGTC
TCCGCACCAAACCATGCAAGAACCCAGCTCGACAGTGGGGGGGGAGGTCA
GAGCCCTCTGGAGCACCGAGACAACCTTGCTGGAGAGCCTCATGTACCGC
AACAAAAACCAGCACGGGAGGGCCGGCTATTGGAAGAGACTGCAGgtaag
gctttgacgggttgacagttctatccctaatttcttgaaagaaatgcaag
acacactttctcctcaccatcctcacacacatagGAGGTCAAGCGGCGGA
CAAAGGAGCTCGATGTGCCGGGATTGCTGGAACTGTTGGCCACGGTACGA
CATGATCTGTCAGTGGGAATGCGAGGAATGCAGCCGCAGAGGCAGCAAAC
GAAAACAAATGCGCAAGCTCTTGTCGCAAGGAGATGCGCCGCCGTAGGTA
TGGCCATCCAGCAGTGCTGCGCGGCCTTGAAGGCGTGCACAGGAGCGGCG
GAGTTGTTGGTGCGTGAAGTGGCTCAAGGCTACTTCTTAAACTTACTGGT
TGTATTCCTGGCCATGTTGGGGCGGCTGAGTACGCTTCTCCGACACGTAG
GCACGCTGGCATTCGGGTTGTATCAGGCTTTAGAAGGACGGATAGGGAAG
GCGGGGAAGGAAGGAGGAAGGGAGCAAGGCATTAGACCGCGCCTCTCAAT
GCAGAAATTTTCAAATGTTTTGGGATTGCATGCTGTTTCGCGTGAGGAGG
AGACAACAGTGGAAGTGGCTTCAGCTAAGCGCCAAGTTAAAGCAGGGCAA
GACGACGACGACGACGACGACGACGACCTCGGGGTCTCCTTGGGCGTTGC
CGCCGCAGCTGCCTCCCTTAACTTACCCTTTCATGCCGCTCCCGTGCTTT
CTTTCAGAACGAGGATCATCCCAGCTTCTACAACTTCCAGTGTCTCAAAT
GCAGCCGCTGCATCCACCACCGGGAAGACTGCTGTTGCGTCGCGAGCCAT
GCTGGTGAGCGAGTACAGTTCGTCCAGCGAGGAAGAAGAGGAAGAGGTAA
ACGATGACAAGGCGCCAGCAAAGCAGCCACATCCACAATCACAGTCATCT
AGGCCGTTGTTGCCCACGGCGGACGAATTGAAACAAGAAGAGAAGGACAT
CTCCTTGGAAACCACCTTACATTTTGTCATCGACCGAAAACCAGGTATAA
GCAGCAAGGGGAATGAGAAACTTGCAAAAGAGCAGCAGAATCAGCGGCCT
TCTCCTCAGGAAAAAGTTTCCAGGGCGCCTACTGTCGCTTCAACCGGAGC
GGCAAAGAAGATGAAGACTAATAAGGACAAACAGAAAGAGATGTGGAAGG
CTAATCGAGGGTCGCTATTAGATGAAATAGACGATATATTCAAGGCCACC
GTGGCAAAAAAAGCCAAGAAAAGAAAGATTAAAAATTAGAAAGACACACA
ATAGATGAAAACAATGAAATACCTCTGAA
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protein sequence of NO15G01320.1

>NO15G01320.1-protein ID=NO15G01320.1-protein|Name=NO15G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=497bp
MRQGSKGGFISARQKASPTILFLFAQLIMHLLWELTPKHAHTFARQASGH
VVDVQQQRLCLPRSPHQTMQEPSSTVGGEVRALWSTETTLLESLMYRNKN
QHGRAGYWKRLQEVKRRTKELDVPGLLELLATVRHDLSVGMRGMQPQRQQ
TKTNAQALVARRCAAVGMAIQQCCAALKACTGAAELLVREVAQGYFLNLL
VVFLAMLGRLSTLLRHVGTLAFGLYQALEGRIGKAGKEGGREQGIRPRLS
MQKFSNVLGLHAVSREEETTVEVASAKRQVKAGQDDDDDDDDDLGVSLGV
AAAAASLNLPFHAAPVLSFRTRIIPASTTSSVSNAAAASTTGKTAVASRA
MLVSEYSSSSEEEEEEVNDDKAPAKQPHPQSQSSRPLLPTADELKQEEKD
ISLETTLHFVIDRKPGISSKGNEKLAKEQQNQRPSPQEKVSRAPTVASTG
AAKKMKTNKDKQKEMWKANRGSLLDEIDDIFKATVAKKAKKRKIKN*
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Synonyms
Publications