NO15G01220, NO15G01220 (gene) Nannochloropsis oceanica

Overview
NameNO15G01220
Unique NameNO15G01220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1208
Alignment locationchr15:345549..346756 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:345549..346756 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036116FN3_sf
IPR003961FN3_dom
Homology
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BLAST of NO15G01220 vs. NCBI_GenBank
Match: EWM22427.1 (hypothetical protein Naga_100011g43 [Nannochloropsis gaditana])

HSP 1 Score: 174.1 bits (440), Expect = 2.500e-40
Identity = 76/107 (71.03%), Postives = 92/107 (85.98%), Query Frame = 0 
Query:    9 LPPREPRFLAAEDTSIKIEWDAISTLNYRIQYKEYLQTWEEATSINVPTGQNTMITALSDLQPCATYCVRIVAIGQNNVESLAGPEIVIDTAAANCTPRTKKACCIC 116
            LPP EPRF+AAEDTSI++EWDA+ TL YRIQYKEYLQ+WEEA  ++VP+GQN M+ AL DLQPCATYCVR+VA+ ++ +ES  GPEI +DT AANCTP+ KKACCIC
Sbjct:    7 LPPEEPRFVAAEDTSIRVEWDAVDTLRYRIQYKEYLQSWEEAAQVDVPSGQNRMVAALPDLQPCATYCVRLVAVDEDGLESPPGPEIFVDTQAANCTPKHKKACCIC 113
[Close]
BLAST of NO15G01220 vs. NCBI_GenBank
Match: XP_002180575.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47983.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 69.7 bits (169), Expect = 6.700e-9
Identity = 34/108 (31.48%), Postives = 58/108 (53.70%), Query Frame = 0 
Query:   11 PREP--RFLAAEDTSIKIEWDAIST--LNYRIQYKEYLQTWEEATSINVPTGQNTMITALSDLQPCATYCVRIVAIGQNNVESLAGPEIVIDTAAANCTPRTKKACCI 115
            P+ P   F+ A +T+I +E+D  S   ++Y +Q+K++ Q W  A++  +             L+P  TYCVR++    +  +    P++V+DT    CTP+  KACCI
Sbjct:    4 PKAPTLNFIEASETTIVVEFDPSSDAGVSYILQWKDHSQPWSAASTKTIRASSGKTKAEAEPLEPGTTYCVRLMVRDASGQDGEPSPQLVLDTEQVGCTPKADKACCI 111
[Close]
BLAST of NO15G01220 vs. NCBI_GenBank
Match: OEU22456.1 (hypothetical protein FRACYDRAFT_273888 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 67.0 bits (162), Expect = 4.400e-8
Identity = 36/109 (33.03%), Postives = 66/109 (60.55%), Query Frame = 0 
Query:   13 EPRFLAAEDTSIKIEWDAISTLN-YRIQYKEYLQTWEE----ATSINVPTGQNTMITALS-DLQPCATYCVRIVAIGQNNVESLAGPEIVIDTAAANCTPRTKKAC-CI 115
            +P  + A +T+I +E+  IS+++ Y +++K+    W+     + S++V  G+  ++T  + DL P  TYCVR   I  + ++   GPE++IDT    CTP+++K+C CI
Sbjct:   10 KPELIEATETTISVEFKPISSIDKYELEWKQIEHQWDTKPVGSISLSV-QGEGKLVTGEAIDLLPGMTYCVRSYCINSDGLKGTPGPELIIDTEQVGCTPKSEKSCGCI 117
The following BLAST results are available for this feature:
BLAST of NO15G01220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM22427.12.500e-4071.03hypothetical protein Naga_100011g43 [Nannochlorops... [more]
XP_002180575.16.700e-931.48predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OEU22456.14.400e-833.03hypothetical protein FRACYDRAFT_273888 [Fragilario... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001484NSK001484Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01220.1NO15G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587413gene_4666Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100011g43gene7973Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01220.1NO15G01220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01220 ID=NO15G01220|Name=NO15G01220|organism=Nannochloropsis oceanica|type=gene|length=1208bp
GAATGAAAGCTACCCTCATGCCTGAAGACGATTTGTGAAGAGGCATGAGT
TTAAATGGAGGGGAGGGGGTCACGAGGGGTACAGGAAGACACGAATTCTA
GATGTACTGAGTGTCTTAGTGTATATGAATGGTGAAACCGGTATGTCACA
GCGCAGCGGTATCCTCAGCACGTAAGCCTTGTAGTGACTCCGAGCCAAAG
ACCACGTTACATGATGAGATAGAACATTGAACGTGATGTCTCGCGCATTA
CTATTTCTGAATTTTGCTTCTATACAACCTACTTTGCCAACACGCGGTAA
TGATGTCCATTCCTTGCTCACCCTGAAAGAGCCGGAATCAGCCATTGGTG
CACGGAGAGCTTGATTGGCCAAACCGTAGTACTCTCTCCTTCGCTTGACA
CCCACGGTCGAATACTTTTTTCGCACACTTGCACATCCCCTCAACCCACA
GAAAGGTCTCGCATCCGCTCCTGCAATGGTTGACGTCGTTGACCGCCCGC
TGCCGCCTAGGGAGCCACGATTTCTTGCGGCCGAGGACACTTCCATCAAG
ATAGAATGgtaagtggtcgtgcctcttccttccttttaaattatttctcc
cttttcaaggatctcctgtctttctcattcgaaaggacaagcttgacagc
gtcgtctaaggagtaacgcttgtcctcctgtgcggcaatggtcttccttc
tattcccttctcgcccaccataagaactttcgcttcgcttttcaatcagt
ccttatacttacacaaagaatcctctatcgtagGGATGCGATTAGCACGT
TAAACTATCGCATCCAGTATAAGGAATACCTCCAGACCTGGGAAGAGGCC
ACATCGATTAATGTTCCCACTGGACAGAACACCATGATTACGGCCCTGTC
TGATCTGCAGCCTTGTGCAACCTACTGCGTAAGAATTGTTGCGATAGGAC
AGAACAATGTGGAGAGCTTGGCAGGCCCGGAGATCGTAATTGACACGGCA
Ggtacgctaacgccgggttgggcttgagaggactagctagcctacccaac
gagaaaaattttactcaagtttcccaatataacattcataacacacatta
gCTGCAAATTGTACGCCGAGAACTAAAAAGGCATGTTGTATATGTTAGTG
GCGCTCGTTGAATGAAAAGGAAAAGTAATGCGCATAAAGCCTGTCATTGT
GTGGCCCG
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protein sequence of NO15G01220.1

>NO15G01220.1-protein ID=NO15G01220.1-protein|Name=NO15G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MVDVVDRPLPPREPRFLAAEDTSIKIEWDAISTLNYRIQYKEYLQTWEEA
TSINVPTGQNTMITALSDLQPCATYCVRIVAIGQNNVESLAGPEIVIDTA
AANCTPRTKKACCIC*
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Synonyms
Publications