NO15G01100, NO15G01100 (gene) Nannochloropsis oceanica

Overview
NameNO15G01100
Unique NameNO15G01100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1392
Alignment locationchr15:317595..318986 +

Link to JBrowse

Properties
Property NameValue
Descriptionproline-rich family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:317595..318986 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0006396RNA processing
Vocabulary: INTERPRO
TermDefinition
IPR019007WW_dom-bd_prot_11
Homology
[Close]
BLAST of NO15G01100 vs. NCBI_GenBank
Match: CBN79518.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.9 bits (185), Expect = 3.800e-10
Identity = 44/89 (49.44%), Postives = 64/89 (71.91%), Query Frame = 0 
Query:    4 STKSGKREMNPADAYRKEQRKKEIKKNKKDRKRVRELGAYVKDPDLLKVEMEKMEKMLTAGLLDHKLLGKLDQMRHLYPAIVKLHAKKK 93
            +T+SG+REMNP DAYRK QRKKE++KNKK+RK+VRE  A V++PDL+  E+++ME +  AG L    + +L  +R  +  ++K   KKK
Sbjct:    5 TTRSGRREMNPTDAYRKLQRKKEVQKNKKERKKVREFSAMVRNPDLMVEEVQRMEVLDAAGKLSENDVKRLANLRVTHRVLLK---KKK 90
[Close]
BLAST of NO15G01100 vs. NCBI_GenBank
Match: XP_020173428.1 (WW domain-binding protein 11 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 68.9 bits (167), Expect = 4.600e-8
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 0 
Query:    3 RSTKSGKREMNPADAYRKEQRKKEIKKNKKDRKRVRELGAYVKDPDLLKVEMEKMEKMLTAGLLDHKLLGKLDQMRHLYPAIVK 87
            ++TK GK  MNP DA+RKEQR+KE+K+N    K+VRE+G   KDPD +K ++EK+EKM   G LD     K  Q+   Y  +VK
Sbjct:    2 KTTKGGK-VMNPTDAFRKEQRRKELKRNXXXXKKVREVGILKKDPDAIKDQIEKLEKMKADGALDKARKHKKRQLEDTYNLVVK 84
[Close]
BLAST of NO15G01100 vs. NCBI_GenBank
Match: XP_003557433.1 (WW domain-binding protein 11 [Brachypodium distachyon] >KQK20473.1 hypothetical protein BRADI_1g54730v3 [Brachypodium distachyon])

HSP 1 Score: 67.8 bits (164), Expect = 1.000e-7
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 0 
Query:    3 RSTKSGKREMNPADAYRKEQRKKEIKKNKKDRKRVRELGAYVKDPDLLKVEMEKMEKMLTAGLLDHKLLGKLDQMRHLYPAIVK 87
            ++TK GK  MNP DA+RKEQR+KE+K+N    K+VRE+G   KDPD +K +++K+EKM   G LD     K  Q+   Y  +VK
Sbjct:    2 KTTKGGK-VMNPTDAFRKEQRRKELKRNXXXXKKVREVGILKKDPDAIKDQIDKLEKMKADGALDKARKHKKRQLEDTYNLVVK 84
[Close]
BLAST of NO15G01100 vs. NCBI_GenBank
Match: XP_010255922.1 (PREDICTED: WW domain-binding protein 11-like isoform X1 [Nelumbo nucifera])

HSP 1 Score: 67.4 bits (163), Expect = 1.300e-7
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 0 
Query:    3 RSTKSGKREMNPADAYRKEQRKKEIKKNKKDRKRVRELGAYVKDPDLLKVEMEKMEKMLTAGLLDHKLLGKLDQMRHLYPAIVK 87
            ++TK GK  MNP DAYRKE RKKE+K+NKK+R++VRE+G   KDP+ ++ ++EK+E M   G LD     K  Q+      ++K
Sbjct:    2 KTTKGGK-VMNPTDAYRKELRKKELKRNKKERRKVREVGILKKDPETIRQQIEKLEMMKADGALDKARKHKKRQLEDTLSLVLK 84
[Close]
BLAST of NO15G01100 vs. NCBI_GenBank
Match: XP_011087192.1 (WW domain-binding protein 11 isoform X1 [Sesamum indicum])

HSP 1 Score: 67.4 bits (163), Expect = 1.300e-7
Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 0 
Query:    1 MGRSTKSGKREMNPADAYRKEQRKKEIKKNKKDRKRVRELGAYVKDPDLLKVEMEKMEKMLTAGLLDHKLLGKLDQMRHLYPAIVK 87
            M ++TK GK  MNP DAYRKE R KE+K+NKK+RK+VRE+G   KDP+ L+ +++K+E M   G LD     K  Q+      ++K
Sbjct:    1 MVKTTKGGK-TMNPTDAYRKELRMKELKRNKKERKKVREVGILKKDPETLREQIQKLETMKADGALDKARKHKKRQLEDTLNLVIK 85
[Close]
BLAST of NO15G01100 vs. NCBI_GenBank
Match: KFH63998.1 (hypothetical protein MVEG_09823 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 67.0 bits (162), Expect = 1.700e-7
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 0 
Query:    1 MGRSTKSGKREMNPADAYRKEQRKKEIKKNKKDRKRVRELGAYVKDPDLLKVEMEKMEKMLTAGLLDHKLLGKLDQMR 79
            MGR  KSG R +NPAD YRKEQ KKEIKKNK+DRK+VRELG+ +KD    +VE+ + E++  AG LD + L KL ++R
Sbjct:    1 MGR--KSG-RSLNPADQYRKEQHKKEIKKNKQDRKKVRELGSAIKD-TTTEVELSQHEELEKAGKLDKEGLKKLAELR 74
[Close]
BLAST of NO15G01100 vs. NCBI_GenBank
Match: XP_003525051.1 (PREDICTED: WW domain-binding protein 11-like [Glycine max] >KHN48648.1 WW domain-binding protein 11 [Glycine soja] >KRH56978.1 hypothetical protein GLYMA_05G031100 [Glycine max])

HSP 1 Score: 66.6 bits (161), Expect = 2.300e-7
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 0 
Query:    3 RSTKSGKREMNPADAYRKEQRKKEIKKNKKDRKRVRELGAYVKDPDLLKVEMEKMEKMLTAGLLDHKLLGKLDQMRHLYPAIVK 87
            ++TK GK  MNP DAYRKE RKKE+K+NKK  K+VRE+G   KDPD LK ++E +E M   G LD     K  Q++     ++K
Sbjct:    2 KTTKGGK-VMNPTDAYRKEIRKKELKRNKKXXKKVREVGILKKDPDQLKKQIENLEMMKADGALDKARKHKKRQLQDTLNLVIK 84
[Close]
BLAST of NO15G01100 vs. NCBI_GenBank
Match: XP_010483978.1 (PREDICTED: WW domain-binding protein 11 [Camelina sativa])

HSP 1 Score: 64.7 bits (156), Expect = 8.700e-7
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 0 
Query:    3 RSTKSGKREMNPADAYRKEQRKKEIKKNKKDRKRVRELGAYVKDPDLLKVEMEKMEKMLTAGLLDHKLLGKLDQMRHLYPAIVK 87
            ++TK GK  MNP DA+RKEQRK+EIK+NKK+R++VRE+G   KDP+ +K ++ K++     G LD     K  Q+      +VK
Sbjct:    2 KTTKGGK-VMNPTDAFRKEQRKREIKRNKKERQKVREVGILKKDPEQIKEQIRKLDMSKAEGALDKARKHKKRQLEDTLKMVVK 84
The following BLAST results are available for this feature:
BLAST of NO15G01100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
CBN79518.13.800e-1049.44expressed unknown protein [Ectocarpus siliculosus][more]
XP_020173428.14.600e-848.81WW domain-binding protein 11 [Aegilops tauschii su... [more]
XP_003557433.11.000e-747.62WW domain-binding protein 11 [Brachypodium distach... [more]
XP_010255922.11.300e-746.43PREDICTED: WW domain-binding protein 11-like isofo... [more]
XP_011087192.11.300e-746.51WW domain-binding protein 11 isoform X1 [Sesamum i... [more]
KFH63998.11.700e-757.69hypothetical protein MVEG_09823 [Mortierella verti... [more]
XP_003525051.12.300e-748.81PREDICTED: WW domain-binding protein 11-like [Glyc... [more]
XP_010483978.18.700e-745.24PREDICTED: WW domain-binding protein 11 [Camelina ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001496NSK001496Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01100.1NO15G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587364gene_4652Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01100.1NO15G01100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01100 ID=NO15G01100|Name=NO15G01100|organism=Nannochloropsis oceanica|type=gene|length=1392bp
ATGGGGCGCAGCACCAAGAGCGGGAAGCGGGAGATGAATCCGGCGGACGC
CTATCGCAAGGAGCAACGCAAGAAGGAGATCAAGAAAAATAAAAAGGACC
GAAAGCGCGTGCGGGAATTGGGTGCTTATGTGAAAGACCCCGACCTACTG
AAGGTGGAGATGGAGAAAATGGAGAAAATGCTGACGGCGGGCTTGCTGGA
CCACAAGCTTCTGGGCAAGCTCGACCAGATGCGGCACCTGTACCCGGCCA
TCGTCAAGCTGCACGCCAAGAAGAAGGGCATGTTTGCTCGGGGCGGCACC
GTGGATGACGAAGAGTTGGAGGCCATGCTCGACGAGGCCGAGCATGCATC
AACCCAAGCTTCCACCCCAAAGCAATCCGCAGCAGTAGCGTCCAGTGACG
GCCAACATCCTGCAGCAGCGGCGCCTCCGGGACATCCCCCACGAGGCATC
CCCCTGCCACCTCCCGGCCCACCTCCCGGTACTTCTCCCCATTTGCAACA
CCAATACAAAGCCGGCAGCAATAGCCTGCAGGCGACAGTGCCCATATACG
GCCAGCCTCTTCCACCCCCATCCATGCTACCGCCCCACCTCGTTGGACGG
CTCCCTCCCCCTCGCCCTCCCCGAGGACCCCCCCCCGGTTTGCCACGGCA
TTTGGCTGCCGCCAGAGGTCCTGAACTCCCACCCCCCCCTCCCGGTCCTC
CTCCGAGCTATGTGGGACGACATGGTTCGCCCCTTTTGCCCACGCCTACG
CAATCACCCTTGCCGCCCCCCTACCCCCAAGGGCCACCCCCTGGCGCTCC
TCCAGGTATCCAGCCCTCAGGCTCGTTCCCTTCTTCGTCTGCCCGCCCGT
CAGCCCGCGTGCAAACTGTGGCAGACCCGCTTGATCCCTCCGCTTCCAAC
TACGGGGAGTACCGAAAGATGTCCTACGTGGAACACCAGAGAGGCGGAGC
CGGCCCCCAAGGACAAGGCCCTCTGCCACCCGCCATAATGGGCCCTAACA
TGCCACCATCAGGCACAGCTCTTCCTCAATTCAAAGGCCCATCCTCGACG
CCAACCTTGTCGACGGCCAACTTTTCACGAGCTGCAGCAGCGGGGCCGGC
ATTGGGACCCGTGGTGGGACCGTCCAGGCCCACGCAGGTGGCCAAGGACT
TGGTCGCTTTCATGCCTGCCTCCTTGCGCGTTAAGCGCCCTGTACCTCCC
CCTTCTTCGGCTGCAGCCGCCAGTATCATGCGTCCACGCAATGTGGGTTT
GGCTCCCACAGCTGCTGCTGTGGTCAGGCCCGCGGAAGGAAGTAGTGCGG
CTGGATTCTCAGTGGTGGGTGAAGCAGTGAAACCCAAGGCCGCGCAAGAT
TCTTACGACCAGTTTATGAGCGAACTTTCCGATTTGTTCTGA
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protein sequence of NO15G01100.1

>NO15G01100.1-protein ID=NO15G01100.1-protein|Name=NO15G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=464bp
MGRSTKSGKREMNPADAYRKEQRKKEIKKNKKDRKRVRELGAYVKDPDLL
KVEMEKMEKMLTAGLLDHKLLGKLDQMRHLYPAIVKLHAKKKGMFARGGT
VDDEELEAMLDEAEHASTQASTPKQSAAVASSDGQHPAAAAPPGHPPRGI
PLPPPGPPPGTSPHLQHQYKAGSNSLQATVPIYGQPLPPPSMLPPHLVGR
LPPPRPPRGPPPGLPRHLAAARGPELPPPPPGPPPSYVGRHGSPLLPTPT
QSPLPPPYPQGPPPGAPPGIQPSGSFPSSSARPSARVQTVADPLDPSASN
YGEYRKMSYVEHQRGGAGPQGQGPLPPAIMGPNMPPSGTALPQFKGPSST
PTLSTANFSRAAAAGPALGPVVGPSRPTQVAKDLVAFMPASLRVKRPVPP
PSSAAAASIMRPRNVGLAPTAAAVVRPAEGSSAAGFSVVGEAVKPKAAQD
SYDQFMSELSDLF*
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Synonyms
Publications